RNA–Protein interactions for RNA: ENST00000305364.8

TRIM35-201, Transcript of tripartite motif containing 35, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM35, Length 4,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35-201ENST00000305364 PPP4R2Q9NY27 417 aa17.87■□□□□ 0.45
TRIM35-201ENST00000305364 NPM2Q86SE8 214 aaKnown RBP17.84■□□□□ 0.45
TRIM35-201ENST00000305364 BAZ1BQ9UIG0 1483 aaKnown RBP17.84■□□□□ 0.45
TRIM35-201ENST00000305364 MRS2Q9HD23 443 aa17.83■□□□□ 0.45
TRIM35-201ENST00000305364 SETD5Q9C0A6 1442 aa17.83■□□□□ 0.45
TRIM35-201ENST00000305364 KIF21BO75037 1637 aa17.83■□□□□ 0.44
TRIM35-201ENST00000305364 ZBTB47Q9UFB7 747 aaPredicted RBP17.81■□□□□ 0.44
TRIM35-201ENST00000305364 CCDC136Q96JN2 1154 aa17.81■□□□□ 0.44
TRIM35-201ENST00000305364 MSH5O43196 834 aa17.8■□□□□ 0.44
TRIM35-201ENST00000305364 NOP58Q9Y2X3 529 aaKnown RBP17.8■□□□□ 0.44
TRIM35-201ENST00000305364 FANCIQ9NVI1 1328 aa17.8■□□□□ 0.44
TRIM35-201ENST00000305364 PPP1R15AO75807 674 aaPredicted RBP17.8■□□□□ 0.44
TRIM35-201ENST00000305364 SMARCA4P51532 1647 aa17.8■□□□□ 0.44
TRIM35-201ENST00000305364 TIMELESSQ9UNS1 1208 aa17.78■□□□□ 0.44
TRIM35-201ENST00000305364 DAXXQ9UER7 740 aaPredicted RBP17.78■□□□□ 0.44
TRIM35-201ENST00000305364 SENP3-EIF4A1A0A087X0R7 540 aa17.73■□□□□ 0.43
TRIM35-201ENST00000305364 EIF4G1Q04637 1599 aaKnown RBP17.72■□□□□ 0.43
TRIM35-201ENST00000305364 KIF27Q86VH2 1401 aa17.72■□□□□ 0.43
TRIM35-201ENST00000305364 EIF4G2P78344 907 aaKnown RBP eCLIP17.71■□□□□ 0.43
TRIM35-201ENST00000305364 RTN4Q9NQC3 1192 aaKnown RBP17.7■□□□□ 0.42
TRIM35-201ENST00000305364 ZNF326Q5BKZ1 582 aaKnown RBP17.69■□□□□ 0.42
TRIM35-201ENST00000305364 CHIC2Q9UKJ5 165 aa17.68■□□□□ 0.42
TRIM35-201ENST00000305364 RRBP1Q9P2E9 1410 aaKnown RBP17.67■□□□□ 0.42
TRIM35-201ENST00000305364 SYNJ1O43426 1573 aa17.67■□□□□ 0.42
TRIM35-201ENST00000305364 ERICH6BQ5W0A0 696 aa17.66■□□□□ 0.42
TRIM35-201ENST00000305364 EIF5BO60841 1220 aaKnown RBP17.62■□□□□ 0.41
TRIM35-201ENST00000305364 ARAP1Q96P48 1450 aa17.61■□□□□ 0.41
TRIM35-201ENST00000305364 HSPA5P11021 654 aaKnown RBP17.61■□□□□ 0.41
TRIM35-201ENST00000305364 RRP7BPQ9NSQ0 103 aa17.61■□□□□ 0.41
TRIM35-201ENST00000305364 WDR97A6NE52 1622 aa17.61■□□□□ 0.41
TRIM35-201ENST00000305364 SALL2Q9Y467 1007 aaPredicted RBP17.59■□□□□ 0.41
TRIM35-201ENST00000305364 MTUS2Q5JR59 1369 aa17.58■□□□□ 0.41
TRIM35-201ENST00000305364 FBLN2P98095 1184 aa17.58■□□□□ 0.4
TRIM35-201ENST00000305364 LAS1LQ9Y4W2 734 aaKnown RBP17.58■□□□□ 0.4
TRIM35-201ENST00000305364 ARID3CA6NKF2 412 aa17.54■□□□□ 0.4
TRIM35-201ENST00000305364 TMC1Q8TDI8 760 aa17.54■□□□□ 0.4
TRIM35-201ENST00000305364 NEFMP07197 916 aa17.53■□□□□ 0.4
TRIM35-201ENST00000305364 IPO9Q96P70 1041 aaKnown RBP17.52■□□□□ 0.39
TRIM35-201ENST00000305364 PAK3O75914 559 aaPredicted RBP17.5■□□□□ 0.39
TRIM35-201ENST00000305364 PHLDB1Q86UU1 1377 aa17.5■□□□□ 0.39
TRIM35-201ENST00000305364 FHAD1B1AJZ9 1412 aa17.49■□□□□ 0.39
TRIM35-201ENST00000305364 ARHGAP35Q9NRY4 1499 aa17.48■□□□□ 0.39
TRIM35-201ENST00000305364 PRKCSHP14314 528 aaPredicted RBP17.47■□□□□ 0.39
TRIM35-201ENST00000305364 CARMIL1Q5VZK9 1371 aa17.47■□□□□ 0.39
TRIM35-201ENST00000305364 ANO8Q9HCE9 1232 aaPredicted RBP17.46■□□□□ 0.39
TRIM35-201ENST00000305364 CUX2O14529 1486 aa17.45■□□□□ 0.38
TRIM35-201ENST00000305364 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.45■□□□□ 0.38
TRIM35-201ENST00000305364 PRXQ9BXM0 1461 aa17.44■□□□□ 0.38
TRIM35-201ENST00000305364 PRKRIP1Q9H875 184 aaPredicted RBP17.44■□□□□ 0.38
TRIM35-201ENST00000305364 CCDC184Q52MB2 194 aa17.42■□□□□ 0.38
TRIM35-201ENST00000305364 ERICH3Q5RHP9 1530 aa17.42■□□□□ 0.38
TRIM35-201ENST00000305364 MAPKBP1O60336 1514 aa17.42■□□□□ 0.38
TRIM35-201ENST00000305364 ZBED9Q6R2W3 1325 aa17.42■□□□□ 0.38
TRIM35-201ENST00000305364 ATAD2BQ9ULI0 1458 aa17.41■□□□□ 0.38
TRIM35-201ENST00000305364 WASHC2AQ641Q2 1341 aa17.41■□□□□ 0.38
TRIM35-201ENST00000305364 FOXD1Q16676 465 aa17.41■□□□□ 0.38
TRIM35-201ENST00000305364 PPM1GO15355 546 aaPredicted RBP17.39■□□□□ 0.37
TRIM35-201ENST00000305364 LRRC9Q6ZRR7 1453 aa17.38■□□□□ 0.37
TRIM35-201ENST00000305364 NUDCQ9Y266 331 aa17.37■□□□□ 0.37
TRIM35-201ENST00000305364 L3MBTL2Q969R5 705 aa17.36■□□□□ 0.37
TRIM35-201ENST00000305364 SLC4A1APQ9BWU0 796 aaKnown RBP17.36■□□□□ 0.37
TRIM35-201ENST00000305364 CCDC18Q5T9S5 1454 aa17.35■□□□□ 0.37
TRIM35-201ENST00000305364 IL27Q8NEV9 243 aa17.34■□□□□ 0.37
TRIM35-201ENST00000305364 FHOD3Q2V2M9 1422 aa17.34■□□□□ 0.37
TRIM35-201ENST00000305364 DDRGK1Q96HY6 314 aa17.31■□□□□ 0.36
TRIM35-201ENST00000305364 TOP2BQ02880 1626 aa17.31■□□□□ 0.36
TRIM35-201ENST00000305364 FMN1Q68DA7 1419 aa17.3■□□□□ 0.36
TRIM35-201ENST00000305364 MPHOSPH9Q99550 1183 aa17.29■□□□□ 0.36
TRIM35-201ENST00000305364 TIAM1Q13009 1591 aa17.27■□□□□ 0.36
TRIM35-201ENST00000305364 CNTLNQ9NXG0 1405 aa17.27■□□□□ 0.36
TRIM35-201ENST00000305364 KDM2AQ9Y2K7 1162 aa17.27■□□□□ 0.35
TRIM35-201ENST00000305364 UACAQ9BZF9 1416 aa17.27■□□□□ 0.35
TRIM35-201ENST00000305364 IGF1RP08069 1367 aa17.27■□□□□ 0.35
TRIM35-201ENST00000305364 TCERG1O14776 1098 aaKnown RBP17.26■□□□□ 0.35
TRIM35-201ENST00000305364 ZNF777Q9ULD5 760 aaPredicted RBP17.26■□□□□ 0.35
TRIM35-201ENST00000305364 AKNAQ7Z591 1439 aa17.26■□□□□ 0.35
TRIM35-201ENST00000305364 CCDC7Q96M83 1385 aa17.24■□□□□ 0.35
TRIM35-201ENST00000305364 PDE4AP27815 886 aa17.24■□□□□ 0.35
TRIM35-201ENST00000305364 ARXQ96QS3 562 aa17.23■□□□□ 0.35
TRIM35-201ENST00000305364 FGD6Q6ZV73 1430 aa17.22■□□□□ 0.35
TRIM35-201ENST00000305364 EXOC6Q8TAG9 804 aa17.22■□□□□ 0.35
TRIM35-201ENST00000305364 USP35Q9P2H5 1018 aa17.21■□□□□ 0.35
TRIM35-201ENST00000305364 RCAN3Q9UKA8 241 aa17.21■□□□□ 0.35
TRIM35-201ENST00000305364 KIF7Q2M1P5 1343 aa17.19■□□□□ 0.34
TRIM35-201ENST00000305364 C11orf95C9JLR9 678 aaPredicted RBP17.18■□□□□ 0.34
TRIM35-201ENST00000305364 CARD11Q9BXL7 1154 aa17.18■□□□□ 0.34
TRIM35-201ENST00000305364 SLC4A3P48751 1232 aa17.16■□□□□ 0.34
TRIM35-201ENST00000305364 CUX1P39880 1505 aa17.14■□□□□ 0.34
TRIM35-201ENST00000305364 RGS3P49796 1198 aa17.14■□□□□ 0.33
TRIM35-201ENST00000305364 RRP1P56182 461 aaKnown RBP17.14■□□□□ 0.33
TRIM35-201ENST00000305364 GSE1Q14687 1217 aa17.13■□□□□ 0.33
TRIM35-201ENST00000305364 CANXP27824 592 aaKnown RBP17.11■□□□□ 0.33
TRIM35-201ENST00000305364 BRPF3Q9ULD4 1205 aa17.11■□□□□ 0.33
TRIM35-201ENST00000305364 HFM1A2PYH4 1435 aa17.11■□□□□ 0.33
TRIM35-201ENST00000305364 PLIN1O60240 522 aa17.1■□□□□ 0.33
TRIM35-201ENST00000305364 SMG6Q86US8 1419 aaKnown RBP17.09■□□□□ 0.33
TRIM35-201ENST00000305364 NBPF8Q3BBV2 869 aa17.09■□□□□ 0.33
TRIM35-201ENST00000305364 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.08■□□□□ 0.32
TRIM35-201ENST00000305364 MAP3K1Q13233 1512 aa17.08■□□□□ 0.32
TRIM35-201ENST00000305364 NAIPQ13075 1403 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms