RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 POTEIP0CG38 1075 aa11.84□□□□□ -0.51
DEPDC4-201ENST00000299185 DCBLD2Q96PD2 775 aa11.82□□□□□ -0.52
DEPDC4-201ENST00000299185 ATAD2BQ9ULI0 1458 aa11.82□□□□□ -0.52
DEPDC4-201ENST00000299185 SUPT5HO00267 1087 aaKnown RBP11.78□□□□□ -0.52
DEPDC4-201ENST00000299185 SMARCA2P51531 1590 aa11.77□□□□□ -0.53
DEPDC4-201ENST00000299185 PEG3Q9GZU2 1588 aa11.77□□□□□ -0.53
DEPDC4-201ENST00000299185 ZNF579Q8NAF0 562 aaKnown RBP11.77□□□□□ -0.53
DEPDC4-201ENST00000299185 STAG3Q9UJ98 1225 aa11.77□□□□□ -0.53
DEPDC4-201ENST00000299185 BAZ1BQ9UIG0 1483 aaKnown RBP11.74□□□□□ -0.53
DEPDC4-201ENST00000299185 ZRANB1Q9UGI0 708 aa11.73□□□□□ -0.53
DEPDC4-201ENST00000299185 HMGXB3Q12766 1538 aa11.72□□□□□ -0.53
DEPDC4-201ENST00000299185 TOP2AP11388 1531 aaKnown RBP11.71□□□□□ -0.53
DEPDC4-201ENST00000299185 NCAPD3P42695 1498 aa11.7□□□□□ -0.54
DEPDC4-201ENST00000299185 CSRNP3Q8WYN3 585 aa11.67□□□□□ -0.54
DEPDC4-201ENST00000299185 CREBZFQ9NS37 354 aa11.67□□□□□ -0.54
DEPDC4-201ENST00000299185 PAK3O75914 559 aaPredicted RBP11.64□□□□□ -0.55
DEPDC4-201ENST00000299185 PLSCR2Q9NRY7 297 aa11.6□□□□□ -0.55
DEPDC4-201ENST00000299185 GALR2O43603 387 aaPredicted RBP11.59□□□□□ -0.55
DEPDC4-201ENST00000299185 CCDC88BA6NC98 1476 aa11.57□□□□□ -0.56
DEPDC4-201ENST00000299185 NPM1P06748 294 aaKnown RBP eCLIP11.56□□□□□ -0.56
DEPDC4-201ENST00000299185 SPDYE4A6NLX3 237 aa11.53□□□□□ -0.56
DEPDC4-201ENST00000299185 NESP48681 1621 aa11.53□□□□□ -0.56
DEPDC4-201ENST00000299185 OTUD5Q96G74 571 aa11.52□□□□□ -0.57
DEPDC4-201ENST00000299185 PHF12Q96QT6 1004 aa11.49□□□□□ -0.57
DEPDC4-201ENST00000299185 POTEB2H3BUK9 544 aa11.44□□□□□ -0.58
DEPDC4-201ENST00000299185 MNX1P50219 401 aaPredicted RBP11.41□□□□□ -0.58
DEPDC4-201ENST00000299185 EHMT2Q96KQ7 1210 aa11.4□□□□□ -0.58
DEPDC4-201ENST00000299185 CADPSQ9ULU8 1353 aa11.4□□□□□ -0.59
DEPDC4-201ENST00000299185 CFTRP13569 1480 aa11.39□□□□□ -0.59
DEPDC4-201ENST00000299185 POTEMA6NI47 508 aa11.39□□□□□ -0.59
DEPDC4-201ENST00000299185 C7P10643 843 aa11.38□□□□□ -0.59
DEPDC4-201ENST00000299185 ASTLQ6HA08 431 aaPredicted RBP11.38□□□□□ -0.59
DEPDC4-201ENST00000299185 PELP1Q8IZL8 1130 aaKnown RBP11.38□□□□□ -0.59
DEPDC4-201ENST00000299185 SLC39A7Q92504 469 aa11.38□□□□□ -0.59
DEPDC4-201ENST00000299185 LAMC3Q9Y6N6 1575 aa11.37□□□□□ -0.59
DEPDC4-201ENST00000299185 KIF21AQ7Z4S6 1674 aa11.37□□□□□ -0.59
DEPDC4-201ENST00000299185 MAMSTRQ6ZN01 415 aa11.36□□□□□ -0.59
DEPDC4-201ENST00000299185 PCDH10Q9P2E7 1040 aa11.36□□□□□ -0.59
DEPDC4-201ENST00000299185 PRDM2Q13029 1718 aa11.35□□□□□ -0.59
DEPDC4-201ENST00000299185 POTEGQ6S5H5 508 aa11.35□□□□□ -0.59
DEPDC4-201ENST00000299185 METRNQ9UJH8 293 aa11.35□□□□□ -0.59
DEPDC4-201ENST00000299185 CUX2O14529 1486 aa11.34□□□□□ -0.59
DEPDC4-201ENST00000299185 ATMINO43313 823 aaPredicted RBP11.33□□□□□ -0.6
DEPDC4-201ENST00000299185 MS4A3Q96HJ5 214 aa11.33□□□□□ -0.6
DEPDC4-201ENST00000299185 FANCD2Q9BXW9 1451 aa11.32□□□□□ -0.6
DEPDC4-201ENST00000299185 TRIM41Q8WV44 630 aa11.32□□□□□ -0.6
DEPDC4-201ENST00000299185 ABCC8Q09428 1581 aa11.31□□□□□ -0.6
DEPDC4-201ENST00000299185 ERCC6Q03468 1493 aa11.31□□□□□ -0.6
DEPDC4-201ENST00000299185 CEP164Q9UPV0 1460 aa11.28□□□□□ -0.6
DEPDC4-201ENST00000299185 THOC2Q8NI27 1593 aaKnown RBP11.27□□□□□ -0.61
DEPDC4-201ENST00000299185 PDS5BQ9NTI5 1447 aa11.26□□□□□ -0.61
DEPDC4-201ENST00000299185 URB2Q14146 1524 aaKnown RBP11.25□□□□□ -0.61
DEPDC4-201ENST00000299185 TSPYL2Q9H2G4 693 aaPredicted RBP11.24□□□□□ -0.61
DEPDC4-201ENST00000299185 SCUBE2Q9NQ36 999 aa11.24□□□□□ -0.61
DEPDC4-201ENST00000299185 MRC2Q9UBG0 1479 aa11.23□□□□□ -0.61
DEPDC4-201ENST00000299185 CUX1P39880 1505 aa11.23□□□□□ -0.61
DEPDC4-201ENST00000299185 SYNJ1O43426 1573 aa11.23□□□□□ -0.61
DEPDC4-201ENST00000299185 POTEJP0CG39 1038 aa11.21□□□□□ -0.61
DEPDC4-201ENST00000299185 CCDC61Q9Y6R9 512 aa11.21□□□□□ -0.61
DEPDC4-201ENST00000299185 PLEKHG5O94827 1062 aa11.19□□□□□ -0.62
DEPDC4-201ENST00000299185 WDR62O43379 1518 aa11.19□□□□□ -0.62
DEPDC4-201ENST00000299185 TOPBP1Q92547 1522 aa11.19□□□□□ -0.62
DEPDC4-201ENST00000299185 ATN1P54259 1190 aaPredicted RBP11.18□□□□□ -0.62
DEPDC4-201ENST00000299185 PROM2Q8N271 834 aa11.18□□□□□ -0.62
DEPDC4-201ENST00000299185 KIF12Q96FN5 646 aa11.18□□□□□ -0.62
DEPDC4-201ENST00000299185 DNMBPQ6XZF7 1577 aa11.18□□□□□ -0.62
DEPDC4-201ENST00000299185 WRNQ14191 1432 aaPredicted RBP eCLIP11.18□□□□□ -0.62
DEPDC4-201ENST00000299185 FAM163AQ96GL9 167 aaPredicted RBP11.15□□□□□ -0.62
DEPDC4-201ENST00000299185 FGD5Q6ZNL6 1462 aa11.14□□□□□ -0.63
DEPDC4-201ENST00000299185 BIVM-ERCC5R4GMW8 1640 aa11.13□□□□□ -0.63
DEPDC4-201ENST00000299185 TOP2BQ02880 1626 aa11.13□□□□□ -0.63
DEPDC4-201ENST00000299185 TIE1P35590 1138 aa11.12□□□□□ -0.63
DEPDC4-201ENST00000299185 BMP2KQ9NSY1 1161 aaPredicted RBP11.12□□□□□ -0.63
DEPDC4-201ENST00000299185 POLA1P09884 1462 aaPredicted RBP11.11□□□□□ -0.63
DEPDC4-201ENST00000299185 RAD54L2Q9Y4B4 1467 aa11.11□□□□□ -0.63
DEPDC4-201ENST00000299185 MIER1Q8N108 512 aa11.08□□□□□ -0.64
DEPDC4-201ENST00000299185 MAP3K13O43283 966 aa11.07□□□□□ -0.64
DEPDC4-201ENST00000299185 LCE2DQ5TA82 110 aaPredicted RBP11.07□□□□□ -0.64
DEPDC4-201ENST00000299185 TRPC6Q9Y210 931 aa11.07□□□□□ -0.64
DEPDC4-201ENST00000299185 SEC24BO95487 1268 aa11.06□□□□□ -0.64
DEPDC4-201ENST00000299185 POTEFA5A3E0 1075 aa11.05□□□□□ -0.64
DEPDC4-201ENST00000299185 WDR97A6NE52 1622 aa11.05□□□□□ -0.64
DEPDC4-201ENST00000299185 ZNF608Q9ULD9 1512 aaPredicted RBP11.04□□□□□ -0.64
DEPDC4-201ENST00000299185 TARBP1Q13395 1621 aaKnown RBP11.04□□□□□ -0.64
DEPDC4-201ENST00000299185 SGIP1Q9BQI5 828 aa11.03□□□□□ -0.64
DEPDC4-201ENST00000299185 RASEFQ8IZ41 740 aa11.02□□□□□ -0.65
DEPDC4-201ENST00000299185 TTLL13PA6NNM8 815 aa11.01□□□□□ -0.65
DEPDC4-201ENST00000299185 IER5LQ5T953 404 aa11.01□□□□□ -0.65
DEPDC4-201ENST00000299185 SOGA1O94964 1423 aa11.01□□□□□ -0.65
DEPDC4-201ENST00000299185 IFT140Q96RY7 1462 aa11□□□□□ -0.65
DEPDC4-201ENST00000299185 EIF4G3O43432 1585 aaKnown RBP11□□□□□ -0.65
DEPDC4-201ENST00000299185 RUSC2Q8N2Y8 1516 aa10.99□□□□□ -0.65
DEPDC4-201ENST00000299185 TDRD9Q8NDG6 1382 aaKnown RBP10.98□□□□□ -0.65
DEPDC4-201ENST00000299185 ABCA10Q8WWZ4 1543 aa10.98□□□□□ -0.65
DEPDC4-201ENST00000299185 ZBTB47Q9UFB7 747 aaPredicted RBP10.97□□□□□ -0.65
DEPDC4-201ENST00000299185 COLQQ9Y215 455 aaPredicted RBP10.97□□□□□ -0.65
DEPDC4-201ENST00000299185 AQRO60306 1485 aaKnown RBP eCLIP10.97□□□□□ -0.65
DEPDC4-201ENST00000299185 ABCA5Q8WWZ7 1642 aa10.97□□□□□ -0.65
DEPDC4-201ENST00000299185 PLCD3Q8N3E9 789 aa10.95□□□□□ -0.66
DEPDC4-201ENST00000299185 TRIM35Q9UPQ4 493 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms