RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 MRS2Q9HD23 443 aa23.13■■□□□ 1.29
SHANK1-201ENST00000293441 CLIP1P30622 1438 aa23.12■■□□□ 1.29
SHANK1-201ENST00000293441 PLEKHD1A6NEE1 506 aa23.12■■□□□ 1.29
SHANK1-201ENST00000293441 CCDC136Q96JN2 1154 aa23.09■■□□□ 1.29
SHANK1-201ENST00000293441 DCAF1Q9Y4B6 1507 aa23.08■■□□□ 1.29
SHANK1-201ENST00000293441 RGL3Q3MIN7 710 aa23.07■■□□□ 1.28
SHANK1-201ENST00000293441 HAP1P54257 671 aaPredicted RBP23.02■■□□□ 1.28
SHANK1-201ENST00000293441 RSF1Q96T23 1441 aaPredicted RBP23.02■■□□□ 1.28
SHANK1-201ENST00000293441 MYH16Q9H6N6 1097 aa23.01■■□□□ 1.27
SHANK1-201ENST00000293441 EIF4G2P78344 907 aaKnown RBP eCLIP23■■□□□ 1.27
SHANK1-201ENST00000293441 ERCC6Q03468 1493 aa22.97■■□□□ 1.27
SHANK1-201ENST00000293441 BAZ1BQ9UIG0 1483 aaKnown RBP22.97■■□□□ 1.27
SHANK1-201ENST00000293441 IRX6P78412 446 aaPredicted RBP22.96■■□□□ 1.27
SHANK1-201ENST00000293441 CFDP1Q9UEE9 299 aaPredicted RBP22.93■■□□□ 1.26
SHANK1-201ENST00000293441 GOLGA3Q08378 1498 aa22.93■■□□□ 1.26
SHANK1-201ENST00000293441 PPM1GO15355 546 aaPredicted RBP22.91■■□□□ 1.26
SHANK1-201ENST00000293441 ARXQ96QS3 562 aa22.9■■□□□ 1.26
SHANK1-201ENST00000293441 SENP3-EIF4A1A0A087X0R7 540 aa22.85■■□□□ 1.25
SHANK1-201ENST00000293441 WRNQ14191 1432 aaPredicted RBP eCLIP22.85■■□□□ 1.25
SHANK1-201ENST00000293441 CEP162Q5TB80 1403 aa22.84■■□□□ 1.25
SHANK1-201ENST00000293441 NBR1Q14596 966 aa22.83■■□□□ 1.25
SHANK1-201ENST00000293441 CFAP53Q96M91 514 aa22.82■■□□□ 1.24
SHANK1-201ENST00000293441 KIF27Q86VH2 1401 aa22.82■■□□□ 1.24
SHANK1-201ENST00000293441 MIER1Q8N108 512 aa22.82■■□□□ 1.24
SHANK1-201ENST00000293441 LMOD2Q6P5Q4 547 aa22.82■■□□□ 1.24
SHANK1-201ENST00000293441 KNSTRNQ9Y448 316 aa22.79■■□□□ 1.24
SHANK1-201ENST00000293441 NACADO15069 1562 aa22.79■■□□□ 1.24
SHANK1-201ENST00000293441 EEA1Q15075 1411 aa22.78■■□□□ 1.24
SHANK1-201ENST00000293441 CARD11Q9BXL7 1154 aa22.77■■□□□ 1.24
SHANK1-201ENST00000293441 EIF5BO60841 1220 aaKnown RBP22.76■■□□□ 1.23
SHANK1-201ENST00000293441 POGKQ9P215 609 aa22.76■■□□□ 1.23
SHANK1-201ENST00000293441 CDCA8Q53HL2 280 aa22.76■■□□□ 1.23
SHANK1-201ENST00000293441 LAS1LQ9Y4W2 734 aaKnown RBP22.75■■□□□ 1.23
SHANK1-201ENST00000293441 TRHP20396 242 aaPredicted RBP22.73■■□□□ 1.23
SHANK1-201ENST00000293441 EIF4G1Q04637 1599 aaKnown RBP22.71■■□□□ 1.23
SHANK1-201ENST00000293441 NEUROD2Q15784 382 aa22.7■■□□□ 1.23
SHANK1-201ENST00000293441 CDK11BP21127 795 aaKnown RBP22.68■■□□□ 1.22
SHANK1-201ENST00000293441 TNNT2P45379 298 aaPredicted RBP22.67■■□□□ 1.22
SHANK1-201ENST00000293441 MLECQ14165 292 aa22.66■■□□□ 1.22
SHANK1-201ENST00000293441 CEP164Q9UPV0 1460 aa22.66■■□□□ 1.22
SHANK1-201ENST00000293441 MAPK8IP3Q9UPT6 1336 aa22.65■■□□□ 1.22
SHANK1-201ENST00000293441 FTSJ3Q8IY81 847 aaKnown RBP22.65■■□□□ 1.22
SHANK1-201ENST00000293441 MYO15BQ96JP2 1530 aa22.63■■□□□ 1.21
SHANK1-201ENST00000293441 NPHP1O15259 732 aa22.62■■□□□ 1.21
SHANK1-201ENST00000293441 CCNB3Q8WWL7 1395 aa22.6■■□□□ 1.21
SHANK1-201ENST00000293441 NUDCQ9Y266 331 aa22.59■■□□□ 1.21
SHANK1-201ENST00000293441 NCLP19338 710 aaKnown RBP22.59■■□□□ 1.21
SHANK1-201ENST00000293441 CC2D1BQ5T0F9 858 aaKnown RBP22.58■■□□□ 1.21
SHANK1-201ENST00000293441 BECN1Q14457 450 aa22.58■■□□□ 1.21
SHANK1-201ENST00000293441 SIN3AQ96ST3 1273 aa22.57■■□□□ 1.2
SHANK1-201ENST00000293441 TNIKQ9UKE5 1360 aa22.56■■□□□ 1.2
SHANK1-201ENST00000293441 CASC1Q6TDU7 716 aa22.55■■□□□ 1.2
SHANK1-201ENST00000293441 U2SURPO15042 1029 aaKnown RBP22.54■■□□□ 1.2
SHANK1-201ENST00000293441 TPRNQ4KMQ1 711 aa22.54■■□□□ 1.2
SHANK1-201ENST00000293441 KANK1Q14678 1352 aa22.53■■□□□ 1.2
SHANK1-201ENST00000293441 SOX12O15370 315 aa22.52■■□□□ 1.2
SHANK1-201ENST00000293441 DDRGK1Q96HY6 314 aa22.52■■□□□ 1.2
SHANK1-201ENST00000293441 TULP1O00294 542 aaPredicted RBP22.52■■□□□ 1.2
SHANK1-201ENST00000293441 BAZ1AQ9NRL2 1556 aaPredicted RBP22.5■■□□□ 1.19
SHANK1-201ENST00000293441 FRAT1Q92837 279 aaPredicted RBP22.49■■□□□ 1.19
SHANK1-201ENST00000293441 DCAF11Q8TEB1 546 aa22.49■■□□□ 1.19
SHANK1-201ENST00000293441 CUX2O14529 1486 aa22.49■■□□□ 1.19
SHANK1-201ENST00000293441 TAOK2Q9UL54 1235 aa22.49■■□□□ 1.19
SHANK1-201ENST00000293441 SAFB2Q14151 953 aaKnown RBP eCLIP22.47■■□□□ 1.19
SHANK1-201ENST00000293441 SUPT16HQ9Y5B9 1047 aaKnown RBP22.47■■□□□ 1.19
SHANK1-201ENST00000293441 CARMIL1Q5VZK9 1371 aa22.46■■□□□ 1.19
SHANK1-201ENST00000293441 SRPK2P78362 688 aaKnown RBP22.45■■□□□ 1.18
SHANK1-201ENST00000293441 OS9Q13438 667 aaPredicted RBP22.45■■□□□ 1.18
SHANK1-201ENST00000293441 GOLGA6L22H0YM25 854 aa22.45■■□□□ 1.18
SHANK1-201ENST00000293441 HDGFP51858 240 aaKnown RBP22.44■■□□□ 1.18
SHANK1-201ENST00000293441 FHAD1B1AJZ9 1412 aa22.44■■□□□ 1.18
SHANK1-201ENST00000293441 TMF1P82094 1093 aa22.42■■□□□ 1.18
SHANK1-201ENST00000293441 ZRSR1Q15695 479 aaKnown RBP22.42■■□□□ 1.18
SHANK1-201ENST00000293441 GGT6Q6P531 493 aa22.42■■□□□ 1.18
SHANK1-201ENST00000293441 PNNQ9H307 717 aaKnown RBP22.39■■□□□ 1.18
SHANK1-201ENST00000293441 STK26Q9P289 416 aa22.38■■□□□ 1.17
SHANK1-201ENST00000293441 CECR2Q9BXF3 1484 aa22.36■■□□□ 1.17
SHANK1-201ENST00000293441 RGS3P49796 1198 aa22.36■■□□□ 1.17
SHANK1-201ENST00000293441 GOLGA2Q08379 1002 aa22.35■■□□□ 1.17
SHANK1-201ENST00000293441 TRIM44Q96DX7 344 aaPredicted RBP22.35■■□□□ 1.17
SHANK1-201ENST00000293441 MORC1Q86VD1 984 aa22.31■■□□□ 1.16
SHANK1-201ENST00000293441 NAP1L2Q9ULW6 460 aaPredicted RBP22.31■■□□□ 1.16
SHANK1-201ENST00000293441 FGD1P98174 961 aa22.3■■□□□ 1.16
SHANK1-201ENST00000293441 SOGA1O94964 1423 aa22.3■■□□□ 1.16
SHANK1-201ENST00000293441 KCNJ4P48050 445 aa22.29■■□□□ 1.16
SHANK1-201ENST00000293441 CHMP4BQ9H444 224 aaKnown RBP22.29■■□□□ 1.16
SHANK1-201ENST00000293441 PTMAP06454 111 aaKnown RBP22.29■■□□□ 1.16
SHANK1-201ENST00000293441 PAK3O75914 559 aaPredicted RBP22.28■■□□□ 1.16
SHANK1-201ENST00000293441 ANP32EQ9BTT0 268 aa22.26■■□□□ 1.15
SHANK1-201ENST00000293441 CARMIL2Q6F5E8 1435 aa22.26■■□□□ 1.15
SHANK1-201ENST00000293441 MS4A1P11836 297 aa22.26■■□□□ 1.15
SHANK1-201ENST00000293441 ARHGAP35Q9NRY4 1499 aa22.26■■□□□ 1.15
SHANK1-201ENST00000293441 FOXD1Q16676 465 aa22.25■■□□□ 1.15
SHANK1-201ENST00000293441 GLIPR1L2Q4G1C9 344 aa22.24■■□□□ 1.15
SHANK1-201ENST00000293441 RTF1Q92541 710 aaKnown RBP22.24■■□□□ 1.15
SHANK1-201ENST00000293441 PKD2Q13563 968 aa22.24■■□□□ 1.15
SHANK1-201ENST00000293441 HDGFL2Q7Z4V5 671 aaPredicted RBP22.22■■□□□ 1.15
SHANK1-201ENST00000293441 HSP90AB1P08238 724 aaKnown RBP22.21■■□□□ 1.15
SHANK1-201ENST00000293441 PDS5BQ9NTI5 1447 aa22.19■■□□□ 1.14
SHANK1-201ENST00000293441 ABCC8Q09428 1581 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms