RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 MRS2Q9HD23 443 aa23.13■■□□□ 1.29
SHANK1-201ENST00000293441 CLIP1P30622 1438 aa23.12■■□□□ 1.29
SHANK1-201ENST00000293441 PLEKHD1A6NEE1 506 aa23.12■■□□□ 1.29
SHANK1-201ENST00000293441 CCDC136Q96JN2 1154 aa23.09■■□□□ 1.29
SHANK1-201ENST00000293441 DCAF1Q9Y4B6 1507 aa23.08■■□□□ 1.29
SHANK1-201ENST00000293441 RGL3Q3MIN7 710 aa23.07■■□□□ 1.28
SHANK1-201ENST00000293441 HAP1P54257 671 aaPredicted RBP23.02■■□□□ 1.28
SHANK1-201ENST00000293441 RSF1Q96T23 1441 aaPredicted RBP23.02■■□□□ 1.28
SHANK1-201ENST00000293441 MYH16Q9H6N6 1097 aa23.01■■□□□ 1.27
SHANK1-201ENST00000293441 EIF4G2P78344 907 aaKnown RBP eCLIP23■■□□□ 1.27
SHANK1-201ENST00000293441 ERCC6Q03468 1493 aa22.97■■□□□ 1.27
SHANK1-201ENST00000293441 BAZ1BQ9UIG0 1483 aaKnown RBP22.97■■□□□ 1.27
SHANK1-201ENST00000293441 IRX6P78412 446 aaPredicted RBP22.96■■□□□ 1.27
SHANK1-201ENST00000293441 CFDP1Q9UEE9 299 aaPredicted RBP22.93■■□□□ 1.26
SHANK1-201ENST00000293441 GOLGA3Q08378 1498 aa22.93■■□□□ 1.26
SHANK1-201ENST00000293441 PPM1GO15355 546 aaPredicted RBP22.91■■□□□ 1.26
SHANK1-201ENST00000293441 ARXQ96QS3 562 aa22.9■■□□□ 1.26
SHANK1-201ENST00000293441 SENP3-EIF4A1A0A087X0R7 540 aa22.85■■□□□ 1.25
SHANK1-201ENST00000293441 WRNQ14191 1432 aaPredicted RBP eCLIP22.85■■□□□ 1.25
SHANK1-201ENST00000293441 CEP162Q5TB80 1403 aa22.84■■□□□ 1.25
SHANK1-201ENST00000293441 NBR1Q14596 966 aa22.83■■□□□ 1.25
SHANK1-201ENST00000293441 CFAP53Q96M91 514 aa22.82■■□□□ 1.24
SHANK1-201ENST00000293441 KIF27Q86VH2 1401 aa22.82■■□□□ 1.24
SHANK1-201ENST00000293441 MIER1Q8N108 512 aa22.82■■□□□ 1.24
SHANK1-201ENST00000293441 LMOD2Q6P5Q4 547 aa22.82■■□□□ 1.24
SHANK1-201ENST00000293441 KNSTRNQ9Y448 316 aa22.79■■□□□ 1.24
SHANK1-201ENST00000293441 NACADO15069 1562 aa22.79■■□□□ 1.24
SHANK1-201ENST00000293441 EEA1Q15075 1411 aa22.78■■□□□ 1.24
SHANK1-201ENST00000293441 CARD11Q9BXL7 1154 aa22.77■■□□□ 1.24
SHANK1-201ENST00000293441 EIF5BO60841 1220 aaKnown RBP22.76■■□□□ 1.23
SHANK1-201ENST00000293441 POGKQ9P215 609 aa22.76■■□□□ 1.23
SHANK1-201ENST00000293441 CDCA8Q53HL2 280 aa22.76■■□□□ 1.23
SHANK1-201ENST00000293441 LAS1LQ9Y4W2 734 aaKnown RBP22.75■■□□□ 1.23
SHANK1-201ENST00000293441 TRHP20396 242 aaPredicted RBP22.73■■□□□ 1.23
SHANK1-201ENST00000293441 EIF4G1Q04637 1599 aaKnown RBP22.71■■□□□ 1.23
SHANK1-201ENST00000293441 NEUROD2Q15784 382 aa22.7■■□□□ 1.23
SHANK1-201ENST00000293441 CDK11BP21127 795 aaKnown RBP22.68■■□□□ 1.22
SHANK1-201ENST00000293441 TNNT2P45379 298 aaPredicted RBP22.67■■□□□ 1.22
SHANK1-201ENST00000293441 MLECQ14165 292 aa22.66■■□□□ 1.22
SHANK1-201ENST00000293441 CEP164Q9UPV0 1460 aa22.66■■□□□ 1.22
SHANK1-201ENST00000293441 MAPK8IP3Q9UPT6 1336 aa22.65■■□□□ 1.22
SHANK1-201ENST00000293441 FTSJ3Q8IY81 847 aaKnown RBP22.65■■□□□ 1.22
SHANK1-201ENST00000293441 MYO15BQ96JP2 1530 aa22.63■■□□□ 1.21
SHANK1-201ENST00000293441 NPHP1O15259 732 aa22.62■■□□□ 1.21
SHANK1-201ENST00000293441 CCNB3Q8WWL7 1395 aa22.6■■□□□ 1.21
SHANK1-201ENST00000293441 NUDCQ9Y266 331 aa22.59■■□□□ 1.21
SHANK1-201ENST00000293441 NCLP19338 710 aaKnown RBP22.59■■□□□ 1.21
SHANK1-201ENST00000293441 CC2D1BQ5T0F9 858 aaKnown RBP22.58■■□□□ 1.21
SHANK1-201ENST00000293441 BECN1Q14457 450 aa22.58■■□□□ 1.21
SHANK1-201ENST00000293441 SIN3AQ96ST3 1273 aa22.57■■□□□ 1.2
SHANK1-201ENST00000293441 TNIKQ9UKE5 1360 aa22.56■■□□□ 1.2
SHANK1-201ENST00000293441 CASC1Q6TDU7 716 aa22.55■■□□□ 1.2
SHANK1-201ENST00000293441 U2SURPO15042 1029 aaKnown RBP22.54■■□□□ 1.2
SHANK1-201ENST00000293441 TPRNQ4KMQ1 711 aa22.54■■□□□ 1.2
SHANK1-201ENST00000293441 KANK1Q14678 1352 aa22.53■■□□□ 1.2
SHANK1-201ENST00000293441 SOX12O15370 315 aa22.52■■□□□ 1.2
SHANK1-201ENST00000293441 DDRGK1Q96HY6 314 aa22.52■■□□□ 1.2
SHANK1-201ENST00000293441 TULP1O00294 542 aaPredicted RBP22.52■■□□□ 1.2
SHANK1-201ENST00000293441 BAZ1AQ9NRL2 1556 aaPredicted RBP22.5■■□□□ 1.19
SHANK1-201ENST00000293441 FRAT1Q92837 279 aaPredicted RBP22.49■■□□□ 1.19
SHANK1-201ENST00000293441 DCAF11Q8TEB1 546 aa22.49■■□□□ 1.19
SHANK1-201ENST00000293441 CUX2O14529 1486 aa22.49■■□□□ 1.19
SHANK1-201ENST00000293441 TAOK2Q9UL54 1235 aa22.49■■□□□ 1.19
SHANK1-201ENST00000293441 SAFB2Q14151 953 aaKnown RBP eCLIP22.47■■□□□ 1.19
SHANK1-201ENST00000293441 SUPT16HQ9Y5B9 1047 aaKnown RBP22.47■■□□□ 1.19
SHANK1-201ENST00000293441 CARMIL1Q5VZK9 1371 aa22.46■■□□□ 1.19
SHANK1-201ENST00000293441 SRPK2P78362 688 aaKnown RBP22.45■■□□□ 1.18
SHANK1-201ENST00000293441 OS9Q13438 667 aaPredicted RBP22.45■■□□□ 1.18
SHANK1-201ENST00000293441 GOLGA6L22H0YM25 854 aa22.45■■□□□ 1.18
SHANK1-201ENST00000293441 HDGFP51858 240 aaKnown RBP22.44■■□□□ 1.18
SHANK1-201ENST00000293441 FHAD1B1AJZ9 1412 aa22.44■■□□□ 1.18
SHANK1-201ENST00000293441 TMF1P82094 1093 aa22.42■■□□□ 1.18
SHANK1-201ENST00000293441 ZRSR1Q15695 479 aaKnown RBP22.42■■□□□ 1.18
SHANK1-201ENST00000293441 GGT6Q6P531 493 aa22.42■■□□□ 1.18
SHANK1-201ENST00000293441 PNNQ9H307 717 aaKnown RBP22.39■■□□□ 1.18
SHANK1-201ENST00000293441 STK26Q9P289 416 aa22.38■■□□□ 1.17
SHANK1-201ENST00000293441 CECR2Q9BXF3 1484 aa22.36■■□□□ 1.17
SHANK1-201ENST00000293441 RGS3P49796 1198 aa22.36■■□□□ 1.17
SHANK1-201ENST00000293441 GOLGA2Q08379 1002 aa22.35■■□□□ 1.17
SHANK1-201ENST00000293441 TRIM44Q96DX7 344 aaPredicted RBP22.35■■□□□ 1.17
SHANK1-201ENST00000293441 MORC1Q86VD1 984 aa22.31■■□□□ 1.16
SHANK1-201ENST00000293441 NAP1L2Q9ULW6 460 aaPredicted RBP22.31■■□□□ 1.16
SHANK1-201ENST00000293441 FGD1P98174 961 aa22.3■■□□□ 1.16
SHANK1-201ENST00000293441 SOGA1O94964 1423 aa22.3■■□□□ 1.16
SHANK1-201ENST00000293441 KCNJ4P48050 445 aa22.29■■□□□ 1.16
SHANK1-201ENST00000293441 CHMP4BQ9H444 224 aaKnown RBP22.29■■□□□ 1.16
SHANK1-201ENST00000293441 PTMAP06454 111 aaKnown RBP22.29■■□□□ 1.16
SHANK1-201ENST00000293441 PAK3O75914 559 aaPredicted RBP22.28■■□□□ 1.16
SHANK1-201ENST00000293441 ANP32EQ9BTT0 268 aa22.26■■□□□ 1.15
SHANK1-201ENST00000293441 CARMIL2Q6F5E8 1435 aa22.26■■□□□ 1.15
SHANK1-201ENST00000293441 MS4A1P11836 297 aa22.26■■□□□ 1.15
SHANK1-201ENST00000293441 ARHGAP35Q9NRY4 1499 aa22.26■■□□□ 1.15
SHANK1-201ENST00000293441 FOXD1Q16676 465 aa22.25■■□□□ 1.15
SHANK1-201ENST00000293441 GLIPR1L2Q4G1C9 344 aa22.24■■□□□ 1.15
SHANK1-201ENST00000293441 RTF1Q92541 710 aaKnown RBP22.24■■□□□ 1.15
SHANK1-201ENST00000293441 PKD2Q13563 968 aa22.24■■□□□ 1.15
SHANK1-201ENST00000293441 HDGFL2Q7Z4V5 671 aaPredicted RBP22.22■■□□□ 1.15
SHANK1-201ENST00000293441 HSP90AB1P08238 724 aaKnown RBP22.21■■□□□ 1.15
SHANK1-201ENST00000293441 PDS5BQ9NTI5 1447 aa22.19■■□□□ 1.14
SHANK1-201ENST00000293441 ABCC8Q09428 1581 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms