RNA–Protein interactions for RNA: ENST00000265619.6

VAPB-201, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,596 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-201ENST00000265619 FANCD2Q9BXW9 1451 aa12.44□□□□□ -0.42
VAPB-201ENST00000265619 PRDM2Q13029 1718 aa12.43□□□□□ -0.42
VAPB-201ENST00000265619 CUX1P39880 1505 aa12.43□□□□□ -0.42
VAPB-201ENST00000265619 CUX2O14529 1486 aa12.41□□□□□ -0.42
VAPB-201ENST00000265619 PAK3O75914 559 aaPredicted RBP12.41□□□□□ -0.42
VAPB-201ENST00000265619 NEFLP07196 543 aa12.41□□□□□ -0.42
VAPB-201ENST00000265619 UBE2Q2Q8WVN8 375 aa12.41□□□□□ -0.42
VAPB-201ENST00000265619 RAPGEF2Q9Y4G8 1499 aa12.4□□□□□ -0.42
VAPB-201ENST00000265619 DHX57Q6P158 1386 aaKnown RBP12.39□□□□□ -0.43
VAPB-201ENST00000265619 GOLGA3Q08378 1498 aa12.39□□□□□ -0.43
VAPB-201ENST00000265619 RAD54L2Q9Y4B4 1467 aa12.38□□□□□ -0.43
VAPB-201ENST00000265619 TDRD9Q8NDG6 1382 aaKnown RBP12.36□□□□□ -0.43
VAPB-201ENST00000265619 FGD5Q6ZNL6 1462 aa12.36□□□□□ -0.43
VAPB-201ENST00000265619 KIF27Q86VH2 1401 aa12.36□□□□□ -0.43
VAPB-201ENST00000265619 TOP2BQ02880 1626 aa12.35□□□□□ -0.43
VAPB-201ENST00000265619 EEA1Q15075 1411 aa12.35□□□□□ -0.43
VAPB-201ENST00000265619 DDX10Q13206 875 aaKnown RBP12.35□□□□□ -0.43
VAPB-201ENST00000265619 FBLN2P98095 1184 aa12.34□□□□□ -0.43
VAPB-201ENST00000265619 TNIKQ9UKE5 1360 aa12.34□□□□□ -0.43
VAPB-201ENST00000265619 CEP164Q9UPV0 1460 aa12.34□□□□□ -0.43
VAPB-201ENST00000265619 CLIP1P30622 1438 aa12.33□□□□□ -0.44
VAPB-201ENST00000265619 ARID3CA6NKF2 412 aa12.33□□□□□ -0.44
VAPB-201ENST00000265619 CDK11AQ9UQ88 783 aaPredicted RBP12.33□□□□□ -0.44
VAPB-201ENST00000265619 MYT1LQ9UL68 1186 aa12.31□□□□□ -0.44
VAPB-201ENST00000265619 ERICH6BQ5W0A0 696 aa12.3□□□□□ -0.44
VAPB-201ENST00000265619 ERCC6Q03468 1493 aa12.29□□□□□ -0.44
VAPB-201ENST00000265619 HIRIP3Q9BW71 556 aaPredicted RBP12.29□□□□□ -0.44
VAPB-201ENST00000265619 PDS5BQ9NTI5 1447 aa12.29□□□□□ -0.44
VAPB-201ENST00000265619 NOP58Q9Y2X3 529 aaKnown RBP12.27□□□□□ -0.44
VAPB-201ENST00000265619 CARMIL1Q5VZK9 1371 aa12.26□□□□□ -0.45
VAPB-201ENST00000265619 TOPBP1Q92547 1522 aa12.25□□□□□ -0.45
VAPB-201ENST00000265619 BIVM-ERCC5R4GMW8 1640 aa12.24□□□□□ -0.45
VAPB-201ENST00000265619 POLA1P09884 1462 aaPredicted RBP12.23□□□□□ -0.45
VAPB-201ENST00000265619 IGF1RP08069 1367 aa12.23□□□□□ -0.45
VAPB-201ENST00000265619 URB2Q14146 1524 aaKnown RBP12.22□□□□□ -0.45
VAPB-201ENST00000265619 LAMC3Q9Y6N6 1575 aa12.21□□□□□ -0.45
VAPB-201ENST00000265619 B4GALNT3Q6L9W6 998 aa12.21□□□□□ -0.46
VAPB-201ENST00000265619 PPP1R15AO75807 674 aaPredicted RBP12.2□□□□□ -0.46
VAPB-201ENST00000265619 KIF21AQ7Z4S6 1674 aa12.19□□□□□ -0.46
VAPB-201ENST00000265619 AQRO60306 1485 aaKnown RBP eCLIP12.18□□□□□ -0.461e-6■■■■□ 26.3
VAPB-201ENST00000265619 DNMBPQ6XZF7 1577 aa12.16□□□□□ -0.46
VAPB-201ENST00000265619 KIF21BO75037 1637 aa12.16□□□□□ -0.46
VAPB-201ENST00000265619 KANK4Q5T7N3 995 aaPredicted RBP12.15□□□□□ -0.46
VAPB-201ENST00000265619 WDR97A6NE52 1622 aa12.15□□□□□ -0.46
VAPB-201ENST00000265619 PRXQ9BXM0 1461 aa12.14□□□□□ -0.47
VAPB-201ENST00000265619 BRPF3Q9ULD4 1205 aa12.13□□□□□ -0.47
VAPB-201ENST00000265619 HNRNPUQ00839 825 aaKnown RBP eCLIP12.13□□□□□ -0.47
VAPB-201ENST00000265619 PKNOX2Q96KN3 472 aa12.13□□□□□ -0.47
VAPB-201ENST00000265619 RTL5Q5HYW3 569 aaPredicted RBP12.11□□□□□ -0.47
VAPB-201ENST00000265619 TIMELESSQ9UNS1 1208 aa12.11□□□□□ -0.47
VAPB-201ENST00000265619 VPS8Q8N3P4 1428 aa12.11□□□□□ -0.47
VAPB-201ENST00000265619 GAPVD1Q14C86 1478 aa12.11□□□□□ -0.47
VAPB-201ENST00000265619 SIN3AQ96ST3 1273 aa12.1□□□□□ -0.47
VAPB-201ENST00000265619 PPP4R2Q9NY27 417 aa12.1□□□□□ -0.47
VAPB-201ENST00000265619 CCER2I3L3R5 266 aa12.1□□□□□ -0.47
VAPB-201ENST00000265619 CHMP7Q8WUX9 453 aaPredicted RBP12.1□□□□□ -0.47
VAPB-201ENST00000265619 FHOD3Q2V2M9 1422 aa12.09□□□□□ -0.47
VAPB-201ENST00000265619 FAM50AQ14320 339 aaKnown RBP12.09□□□□□ -0.47
VAPB-201ENST00000265619 ARAP1Q96P48 1450 aa12.09□□□□□ -0.47
VAPB-201ENST00000265619 ANP32CO43423 234 aa12.09□□□□□ -0.47
VAPB-201ENST00000265619 MAPKBP1O60336 1514 aa12.09□□□□□ -0.47
VAPB-201ENST00000265619 WASHC2AQ641Q2 1341 aa12.08□□□□□ -0.48
VAPB-201ENST00000265619 ZNF608Q9ULD9 1512 aaPredicted RBP12.08□□□□□ -0.48
VAPB-201ENST00000265619 PLEKHG5O94827 1062 aa12.07□□□□□ -0.48
VAPB-201ENST00000265619 IPO9Q96P70 1041 aaKnown RBP12.07□□□□□ -0.48
VAPB-201ENST00000265619 LAS1LQ9Y4W2 734 aaKnown RBP12.07□□□□□ -0.48
VAPB-201ENST00000265619 MRC2Q9UBG0 1479 aa12.07□□□□□ -0.48
VAPB-201ENST00000265619 PHF23Q9BUL5 403 aaPredicted RBP12.06□□□□□ -0.48
VAPB-201ENST00000265619 ABCA10Q8WWZ4 1543 aa12.05□□□□□ -0.48
VAPB-201ENST00000265619 ARHGAP35Q9NRY4 1499 aa12.04□□□□□ -0.48
VAPB-201ENST00000265619 ERICH3Q5RHP9 1530 aa12.03□□□□□ -0.48
VAPB-201ENST00000265619 CCDC184Q52MB2 194 aa12.03□□□□□ -0.48
VAPB-201ENST00000265619 ZBTB47Q9UFB7 747 aaPredicted RBP12.03□□□□□ -0.48
VAPB-201ENST00000265619 NEFMP07197 916 aa12.01□□□□□ -0.49
VAPB-201ENST00000265619 NCBP3Q53F19 620 aaKnown RBP12□□□□□ -0.49
VAPB-201ENST00000265619 WASHC2CQ9Y4E1 1318 aa12□□□□□ -0.49
VAPB-201ENST00000265619 C11orf95C9JLR9 678 aaPredicted RBP11.99□□□□□ -0.49
VAPB-201ENST00000265619 ANP32AP39687 249 aaKnown RBP11.98□□□□□ -0.49
VAPB-201ENST00000265619 THOC2Q8NI27 1593 aaKnown RBP11.98□□□□□ -0.49
VAPB-201ENST00000265619 RAB3GAP2Q9H2M9 1393 aa11.98□□□□□ -0.49
VAPB-201ENST00000265619 NPM2Q86SE8 214 aaKnown RBP11.98□□□□□ -0.49
VAPB-201ENST00000265619 SNAPC4Q5SXM2 1469 aa11.94□□□□□ -0.5
VAPB-201ENST00000265619 WDR62O43379 1518 aa11.94□□□□□ -0.5
VAPB-201ENST00000265619 RRBP1Q9P2E9 1410 aaKnown RBP11.93□□□□□ -0.5
VAPB-201ENST00000265619 SENP3-EIF4A1A0A087X0R7 540 aa11.93□□□□□ -0.5
VAPB-201ENST00000265619 MTUS2Q5JR59 1369 aa11.92□□□□□ -0.5
VAPB-201ENST00000265619 ZMYND15Q9H091 742 aa11.92□□□□□ -0.5
VAPB-201ENST00000265619 GRIN2BQ13224 1484 aa11.91□□□□□ -0.5
VAPB-201ENST00000265619 TARBP1Q13395 1621 aaKnown RBP11.91□□□□□ -0.5
VAPB-201ENST00000265619 IFT140Q96RY7 1462 aa11.91□□□□□ -0.5
VAPB-201ENST00000265619 CHIC2Q9UKJ5 165 aa11.9□□□□□ -0.5
VAPB-201ENST00000265619 AKNAQ7Z591 1439 aa11.9□□□□□ -0.5
VAPB-201ENST00000265619 PODXL2Q9NZ53 605 aa11.9□□□□□ -0.5
VAPB-201ENST00000265619 FAM9BQ8IZU0 186 aa11.89□□□□□ -0.51
VAPB-201ENST00000265619 ZNF777Q9ULD5 760 aaPredicted RBP11.89□□□□□ -0.51
VAPB-201ENST00000265619 FHAD1B1AJZ9 1412 aa11.89□□□□□ -0.51
VAPB-201ENST00000265619 CCNB3Q8WWL7 1395 aa11.88□□□□□ -0.51
VAPB-201ENST00000265619 VSIG10Q8N0Z9 540 aa11.88□□□□□ -0.51
VAPB-201ENST00000265619 FRAT1Q92837 279 aaPredicted RBP11.88□□□□□ -0.51
VAPB-201ENST00000265619 ABCA5Q8WWZ7 1642 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms