RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 PABPN1Q86U42 306 aaKnown RBP eCLIP15.04■□□□□ -0
PTPN4-201ENST00000263708 BECN1Q14457 450 aa15.04■□□□□ -0
PTPN4-201ENST00000263708 NPM1P06748 294 aaKnown RBP eCLIP15.03■□□□□ -0
PTPN4-201ENST00000263708 ACIN1Q9UKV3 1341 aaKnown RBP15.03■□□□□ -0
PTPN4-201ENST00000263708 CASC1Q6TDU7 716 aa15.01□□□□□ -0.01
PTPN4-201ENST00000263708 AMER1Q5JTC6 1135 aaPredicted RBP15□□□□□ -0.01
PTPN4-201ENST00000263708 PLCB2Q00722 1185 aa14.98□□□□□ -0.01
PTPN4-201ENST00000263708 KDM2AQ9Y2K7 1162 aa14.97□□□□□ -0.01
PTPN4-201ENST00000263708 IRX6P78412 446 aaPredicted RBP14.97□□□□□ -0.01
PTPN4-201ENST00000263708 PRM3Q9NNZ6 103 aa14.96□□□□□ -0.01
PTPN4-201ENST00000263708 GOLGA6L6A8MZA4 724 aa14.96□□□□□ -0.02
PTPN4-201ENST00000263708 DDX10Q13206 875 aaKnown RBP14.95□□□□□ -0.02
PTPN4-201ENST00000263708 NAP1L2Q9ULW6 460 aaPredicted RBP14.94□□□□□ -0.02
PTPN4-201ENST00000263708 DDRGK1Q96HY6 314 aa14.94□□□□□ -0.02
PTPN4-201ENST00000263708 PPP1R15AO75807 674 aaPredicted RBP14.93□□□□□ -0.02
PTPN4-201ENST00000263708 NAP1L5Q96NT1 182 aaPredicted RBP14.93□□□□□ -0.02
PTPN4-201ENST00000263708 ANP32EQ9BTT0 268 aa14.92□□□□□ -0.02
PTPN4-201ENST00000263708 GOLGA2Q08379 1002 aa14.91□□□□□ -0.02
PTPN4-201ENST00000263708 FGD1P98174 961 aa14.89□□□□□ -0.03
PTPN4-201ENST00000263708 MRS2Q9HD23 443 aa14.88□□□□□ -0.03
PTPN4-201ENST00000263708 ISY1Q9ULR0 285 aaKnown RBP14.88□□□□□ -0.03
PTPN4-201ENST00000263708 PPM1GO15355 546 aaPredicted RBP14.88□□□□□ -0.03
PTPN4-201ENST00000263708 FTSJ3Q8IY81 847 aaKnown RBP14.86□□□□□ -0.03
PTPN4-201ENST00000263708 LAS1LQ9Y4W2 734 aaKnown RBP14.85□□□□□ -0.03
PTPN4-201ENST00000263708 CHIC2Q9UKJ5 165 aa14.85□□□□□ -0.03
PTPN4-201ENST00000263708 OS9Q13438 667 aaPredicted RBP14.83□□□□□ -0.03
PTPN4-201ENST00000263708 LMOD2Q6P5Q4 547 aa14.83□□□□□ -0.04
PTPN4-201ENST00000263708 NRDCO43847 1150 aa14.82□□□□□ -0.04
PTPN4-201ENST00000263708 KCNJ4P48050 445 aa14.81□□□□□ -0.04
PTPN4-201ENST00000263708 NOC3LQ8WTT2 800 aaKnown RBP14.81□□□□□ -0.04
PTPN4-201ENST00000263708 ARID4BQ4LE39 1312 aaPredicted RBP14.8□□□□□ -0.04
PTPN4-201ENST00000263708 RTN4Q9NQC3 1192 aaKnown RBP14.79□□□□□ -0.04
PTPN4-201ENST00000263708 CHAF1AQ13111 956 aaPredicted RBP14.78□□□□□ -0.04
PTPN4-201ENST00000263708 DRC7Q8IY82 874 aa14.77□□□□□ -0.04
PTPN4-201ENST00000263708 KIAA2012Q0VF49 1180 aa14.77□□□□□ -0.05
PTPN4-201ENST00000263708 SENP3-EIF4A1A0A087X0R7 540 aa14.77□□□□□ -0.05
PTPN4-201ENST00000263708 HSP90AB1P08238 724 aaKnown RBP14.76□□□□□ -0.05
PTPN4-201ENST00000263708 PNNQ9H307 717 aaKnown RBP14.75□□□□□ -0.05
PTPN4-201ENST00000263708 GOLGA6L4A6NEF3 574 aa14.75□□□□□ -0.05
PTPN4-201ENST00000263708 PDE4CQ08493 712 aa14.74□□□□□ -0.05
PTPN4-201ENST00000263708 ABCC9O60706 1549 aa14.74□□□□□ -0.05
PTPN4-201ENST00000263708 ERICH6BQ5W0A0 696 aa14.74□□□□□ -0.05
PTPN4-201ENST00000263708 CFAP53Q96M91 514 aa14.73□□□□□ -0.05
PTPN4-201ENST00000263708 L1TD1Q5T7N2 865 aaKnown RBP14.72□□□□□ -0.05
PTPN4-201ENST00000263708 GNL2Q13823 731 aaKnown RBP14.72□□□□□ -0.05
PTPN4-201ENST00000263708 HIRIP3Q9BW71 556 aaPredicted RBP14.71□□□□□ -0.05
PTPN4-201ENST00000263708 TSPY4P0CV99 314 aa14.69□□□□□ -0.06
PTPN4-201ENST00000263708 TSPY10P0CW01 314 aa14.69□□□□□ -0.06
PTPN4-201ENST00000263708 NEUROD2Q15784 382 aa14.69□□□□□ -0.06
PTPN4-201ENST00000263708 MAPK8IP3Q9UPT6 1336 aa14.67□□□□□ -0.06
PTPN4-201ENST00000263708 A0A0U1RQG5 324 aaPredicted RBP14.66□□□□□ -0.06
PTPN4-201ENST00000263708 MSNP26038 577 aaKnown RBP14.65□□□□□ -0.06
PTPN4-201ENST00000263708 ANO8Q9HCE9 1232 aaPredicted RBP14.64□□□□□ -0.07
PTPN4-201ENST00000263708 RGS3P49796 1198 aa14.64□□□□□ -0.07
PTPN4-201ENST00000263708 FRAT1Q92837 279 aaPredicted RBP14.63□□□□□ -0.07
PTPN4-201ENST00000263708 KRI1Q8N9T8 703 aaKnown RBP14.63□□□□□ -0.07
PTPN4-201ENST00000263708 ARID3AQ99856 593 aa14.63□□□□□ -0.07
PTPN4-201ENST00000263708 KNSTRNQ9Y448 316 aa14.63□□□□□ -0.07
PTPN4-201ENST00000263708 FBXO3Q9UK99 471 aa14.61□□□□□ -0.07
PTPN4-201ENST00000263708 RGL3Q3MIN7 710 aa14.61□□□□□ -0.07
PTPN4-201ENST00000263708 SPRYD3Q8NCJ5 442 aa14.6□□□□□ -0.07
PTPN4-201ENST00000263708 KCNH8Q96L42 1107 aa14.6□□□□□ -0.07
PTPN4-201ENST00000263708 HSCBQ8IWL3 235 aa14.57□□□□□ -0.08
PTPN4-201ENST00000263708 EIF4G2P78344 907 aaKnown RBP eCLIP14.57□□□□□ -0.081e-7■■■■■ 57.2
PTPN4-201ENST00000263708 MCCP23508 829 aa14.57□□□□□ -0.08
PTPN4-201ENST00000263708 POGKQ9P215 609 aa14.56□□□□□ -0.08
PTPN4-201ENST00000263708 TNNT3P45378 269 aaPredicted RBP14.55□□□□□ -0.08
PTPN4-201ENST00000263708 SOX12O15370 315 aa14.55□□□□□ -0.08
PTPN4-201ENST00000263708 CSRNP3Q8WYN3 585 aa14.55□□□□□ -0.08
PTPN4-201ENST00000263708 TMX4Q9H1E5 349 aaPredicted RBP14.54□□□□□ -0.08
PTPN4-201ENST00000263708 U2SURPO15042 1029 aaKnown RBP14.54□□□□□ -0.08
PTPN4-201ENST00000263708 NUDCQ9Y266 331 aa14.54□□□□□ -0.08
PTPN4-201ENST00000263708 MTUS2Q5JR59 1369 aa14.53□□□□□ -0.08
PTPN4-201ENST00000263708 CHMP4BQ9H444 224 aaKnown RBP14.53□□□□□ -0.08
PTPN4-201ENST00000263708 RRP7BPQ9NSQ0 103 aa14.53□□□□□ -0.08
PTPN4-201ENST00000263708 SCRIBQ14160 1630 aa14.52□□□□□ -0.08
PTPN4-201ENST00000263708 GOLGA6L1Q8N7Z2 621 aa14.51□□□□□ -0.09
PTPN4-201ENST00000263708 CDCA8Q53HL2 280 aa14.51□□□□□ -0.09
PTPN4-201ENST00000263708 CREBRFQ8IUR6 639 aa14.5□□□□□ -0.09
PTPN4-201ENST00000263708 ZNF330Q9Y3S2 320 aaPredicted RBP14.5□□□□□ -0.09
PTPN4-201ENST00000263708 CHMP7Q8WUX9 453 aaPredicted RBP14.5□□□□□ -0.09
PTPN4-201ENST00000263708 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.48□□□□□ -0.09
PTPN4-201ENST00000263708 HSP90B1P14625 803 aaKnown RBP14.48□□□□□ -0.09
PTPN4-201ENST00000263708 SUPT16HQ9Y5B9 1047 aaKnown RBP14.48□□□□□ -0.09
PTPN4-201ENST00000263708 VPS53Q5VIR6 699 aa14.47□□□□□ -0.09
PTPN4-201ENST00000263708 KIAA1211Q6ZU35 1233 aa14.47□□□□□ -0.09
PTPN4-201ENST00000263708 APBB1O00213 710 aa14.47□□□□□ -0.09
PTPN4-201ENST00000263708 NOP58Q9Y2X3 529 aaKnown RBP14.47□□□□□ -0.09
PTPN4-201ENST00000263708 CC2D1BQ5T0F9 858 aaKnown RBP14.46□□□□□ -0.09
PTPN4-201ENST00000263708 CEP89Q96ST8 783 aa14.46□□□□□ -0.09
PTPN4-201ENST00000263708 G3V3G9 751 aa14.46□□□□□ -0.09
PTPN4-201ENST00000263708 DCAF8Q5TAQ9 597 aa14.46□□□□□ -0.09
PTPN4-201ENST00000263708 MIER1Q8N108 512 aa14.45□□□□□ -0.1
PTPN4-201ENST00000263708 RASSF8Q8NHQ8 419 aa14.45□□□□□ -0.1
PTPN4-201ENST00000263708 MS4A1P11836 297 aa14.44□□□□□ -0.1
PTPN4-201ENST00000263708 TPM4P67936 248 aa14.44□□□□□ -0.1
PTPN4-201ENST00000263708 WWC1Q8IX03 1113 aa14.44□□□□□ -0.1
PTPN4-201ENST00000263708 PATL2C9JE40 543 aaKnown RBP14.42□□□□□ -0.1
PTPN4-201ENST00000263708 RTF1Q92541 710 aaKnown RBP14.41□□□□□ -0.1
PTPN4-201ENST00000263708 CARD11Q9BXL7 1154 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms