RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 KDM2AQ9Y2K7 1162 aa14.4□□□□□ -0.1
CD44-201ENST00000263398 WRNQ14191 1432 aaPredicted RBP eCLIP14.4□□□□□ -0.1
CD44-201ENST00000263398 WDR43Q15061 677 aaKnown RBP eCLIP14.39□□□□□ -0.11
CD44-201ENST00000263398 ANP32BQ92688 251 aaKnown RBP14.39□□□□□ -0.11
CD44-201ENST00000263398 ESF1Q9H501 851 aaKnown RBP14.38□□□□□ -0.11
CD44-201ENST00000263398 STAG3Q9UJ98 1225 aa14.38□□□□□ -0.11
CD44-201ENST00000263398 RRP7BPQ9NSQ0 103 aa14.37□□□□□ -0.11
CD44-201ENST00000263398 NPM1P06748 294 aaKnown RBP eCLIP14.36□□□□□ -0.11
CD44-201ENST00000263398 WIZO95785 1651 aa14.36□□□□□ -0.11
CD44-201ENST00000263398 IRX6P78412 446 aaPredicted RBP14.36□□□□□ -0.11
CD44-201ENST00000263398 CEP164Q9UPV0 1460 aa14.34□□□□□ -0.11
CD44-201ENST00000263398 SOGA1O94964 1423 aa14.34□□□□□ -0.11
CD44-201ENST00000263398 ABCC8Q09428 1581 aa14.33□□□□□ -0.12
CD44-201ENST00000263398 NBR1Q14596 966 aa14.32□□□□□ -0.12
CD44-201ENST00000263398 CCDC88BA6NC98 1476 aa14.32□□□□□ -0.12
CD44-201ENST00000263398 CHMP7Q8WUX9 453 aaPredicted RBP14.32□□□□□ -0.12
CD44-201ENST00000263398 EIF5BO60841 1220 aaKnown RBP14.31□□□□□ -0.12
CD44-201ENST00000263398 KIF27Q86VH2 1401 aa14.3□□□□□ -0.12
CD44-201ENST00000263398 PLEKHD1A6NEE1 506 aa14.25□□□□□ -0.13
CD44-201ENST00000263398 SUPT16HQ9Y5B9 1047 aaKnown RBP14.22□□□□□ -0.13
CD44-201ENST00000263398 CFDP1Q9UEE9 299 aaPredicted RBP14.2□□□□□ -0.14
CD44-201ENST00000263398 SIN3AQ96ST3 1273 aa14.2□□□□□ -0.14
CD44-201ENST00000263398 RGL3Q3MIN7 710 aa14.19□□□□□ -0.14
CD44-201ENST00000263398 DDRGK1Q96HY6 314 aa14.19□□□□□ -0.14
CD44-201ENST00000263398 CDCA8Q53HL2 280 aa14.18□□□□□ -0.14
CD44-201ENST00000263398 CCNB3Q8WWL7 1395 aa14.17□□□□□ -0.14
CD44-201ENST00000263398 TIMELESSQ9UNS1 1208 aa14.17□□□□□ -0.14
CD44-201ENST00000263398 CARD11Q9BXL7 1154 aa14.16□□□□□ -0.14
CD44-201ENST00000263398 MYH16Q9H6N6 1097 aa14.16□□□□□ -0.14
CD44-201ENST00000263398 BECN1Q14457 450 aa14.15□□□□□ -0.14
CD44-201ENST00000263398 ANP32EQ9BTT0 268 aa14.15□□□□□ -0.14
CD44-201ENST00000263398 PPP4R2Q9NY27 417 aa14.14□□□□□ -0.15
CD44-201ENST00000263398 KNSTRNQ9Y448 316 aa14.14□□□□□ -0.15
CD44-201ENST00000263398 KCNH8Q96L42 1107 aa14.14□□□□□ -0.15
CD44-201ENST00000263398 FHAD1B1AJZ9 1412 aa14.13□□□□□ -0.15
CD44-201ENST00000263398 ARXQ96QS3 562 aa14.13□□□□□ -0.15
CD44-201ENST00000263398 GLIPR1L2Q4G1C9 344 aa14.12□□□□□ -0.15
CD44-201ENST00000263398 CFAP53Q96M91 514 aa14.11□□□□□ -0.15
CD44-201ENST00000263398 TOP2AP11388 1531 aaKnown RBP14.1□□□□□ -0.15
CD44-201ENST00000263398 SENP3-EIF4A1A0A087X0R7 540 aa14.08□□□□□ -0.15
CD44-201ENST00000263398 PLPPR3Q6T4P5 718 aa14.08□□□□□ -0.15
CD44-201ENST00000263398 VPS8Q8N3P4 1428 aa14.07□□□□□ -0.16
CD44-201ENST00000263398 RUSC2Q8N2Y8 1516 aa14.07□□□□□ -0.16
CD44-201ENST00000263398 SMARCA4P51532 1647 aa14.07□□□□□ -0.16
CD44-201ENST00000263398 CCER2I3L3R5 266 aa14.07□□□□□ -0.16
CD44-201ENST00000263398 PPM1GO15355 546 aaPredicted RBP14.07□□□□□ -0.16
CD44-201ENST00000263398 CARMIL1Q5VZK9 1371 aa14.06□□□□□ -0.16
CD44-201ENST00000263398 ATAD2BQ9ULI0 1458 aa14.04□□□□□ -0.16
CD44-201ENST00000263398 PPP1R15AO75807 674 aaPredicted RBP14.03□□□□□ -0.16
CD44-201ENST00000263398 GOLGA6L22H0YM25 854 aa14.03□□□□□ -0.16
CD44-201ENST00000263398 CUX2O14529 1486 aa14.03□□□□□ -0.16
CD44-201ENST00000263398 SETD5Q9C0A6 1442 aa14.02□□□□□ -0.17
CD44-201ENST00000263398 SMARCA2P51531 1590 aa14.01□□□□□ -0.17
CD44-201ENST00000263398 FTSJ3Q8IY81 847 aaKnown RBP14□□□□□ -0.17
CD44-201ENST00000263398 B4GALNT3Q6L9W6 998 aa14□□□□□ -0.17
CD44-201ENST00000263398 TRIM44Q96DX7 344 aaPredicted RBP14□□□□□ -0.17
CD44-201ENST00000263398 KANK4Q5T7N3 995 aaPredicted RBP13.99□□□□□ -0.17
CD44-201ENST00000263398 NEUROD2Q15784 382 aa13.98□□□□□ -0.17
CD44-201ENST00000263398 NUDCQ9Y266 331 aa13.98□□□□□ -0.17
CD44-201ENST00000263398 NOP58Q9Y2X3 529 aaKnown RBP13.98□□□□□ -0.17
CD44-201ENST00000263398 NCLP19338 710 aaKnown RBP13.97□□□□□ -0.17
CD44-201ENST00000263398 SENP3Q9H4L4 574 aaPredicted RBP13.97□□□□□ -0.17
CD44-201ENST00000263398 RGS3P49796 1198 aa13.97□□□□□ -0.17
CD44-201ENST00000263398 MAPK8IP3Q9UPT6 1336 aa13.96□□□□□ -0.17
CD44-201ENST00000263398 DCAF11Q8TEB1 546 aa13.96□□□□□ -0.17
CD44-201ENST00000263398 TMF1P82094 1093 aa13.96□□□□□ -0.18
CD44-201ENST00000263398 CC2D1BQ5T0F9 858 aaKnown RBP13.95□□□□□ -0.18
CD44-201ENST00000263398 HSPA5P11021 654 aaKnown RBP13.94□□□□□ -0.18
CD44-201ENST00000263398 MS4A1P11836 297 aa13.93□□□□□ -0.18
CD44-201ENST00000263398 FRAT1Q92837 279 aaPredicted RBP13.93□□□□□ -0.18
CD44-201ENST00000263398 ARHGAP35Q9NRY4 1499 aa13.93□□□□□ -0.18
CD44-201ENST00000263398 ERICH6BQ5W0A0 696 aa13.93□□□□□ -0.18
CD44-201ENST00000263398 TDRD9Q8NDG6 1382 aaKnown RBP13.92□□□□□ -0.18
CD44-201ENST00000263398 LAS1LQ9Y4W2 734 aaKnown RBP13.92□□□□□ -0.18
CD44-201ENST00000263398 CHMP4BQ9H444 224 aaKnown RBP13.92□□□□□ -0.18
CD44-201ENST00000263398 C14orf37Q86TY3 774 aa13.91□□□□□ -0.18
CD44-201ENST00000263398 CASC1Q6TDU7 716 aa13.91□□□□□ -0.18
CD44-201ENST00000263398 RAB3GAP2Q9H2M9 1393 aa13.91□□□□□ -0.18
CD44-201ENST00000263398 RAPGEF2Q9Y4G8 1499 aa13.91□□□□□ -0.18
CD44-201ENST00000263398 RBM19Q9Y4C8 960 aaKnown RBP13.9□□□□□ -0.18
CD44-201ENST00000263398 POGKQ9P215 609 aa13.89□□□□□ -0.19
CD44-201ENST00000263398 TNNT2P45379 298 aaPredicted RBP13.88□□□□□ -0.19
CD44-201ENST00000263398 ZBTB7CA1YPR0 619 aa13.87□□□□□ -0.19
CD44-201ENST00000263398 PKD2Q13563 968 aa13.87□□□□□ -0.19
CD44-201ENST00000263398 CADPSQ9ULU8 1353 aa13.86□□□□□ -0.19
CD44-201ENST00000263398 PNNQ9H307 717 aaKnown RBP13.86□□□□□ -0.19
CD44-201ENST00000263398 U2SURPO15042 1029 aaKnown RBP13.85□□□□□ -0.19
CD44-201ENST00000263398 EIF4G1Q04637 1599 aaKnown RBP13.85□□□□□ -0.19
CD44-201ENST00000263398 FMN1Q68DA7 1419 aa13.84□□□□□ -0.19
CD44-201ENST00000263398 ERCC6Q03468 1493 aa13.84□□□□□ -0.19
CD44-201ENST00000263398 MPHOSPH9Q99550 1183 aa13.84□□□□□ -0.19
CD44-201ENST00000263398 PTMAP06454 111 aaKnown RBP13.83□□□□□ -0.19
CD44-201ENST00000263398 KANK1Q14678 1352 aa13.83□□□□□ -0.2
CD44-201ENST00000263398 PLEKHG5O94827 1062 aa13.82□□□□□ -0.2
CD44-201ENST00000263398 KTN1Q86UP2 1357 aaKnown RBP13.82□□□□□ -0.2
CD44-201ENST00000263398 FOXD1Q16676 465 aa13.82□□□□□ -0.2
CD44-201ENST00000263398 RALBP1Q15311 655 aa13.8□□□□□ -0.2
CD44-201ENST00000263398 MORC1Q86VD1 984 aa13.8□□□□□ -0.2
CD44-201ENST00000263398 HSP90AB1P08238 724 aaKnown RBP13.8□□□□□ -0.2
CD44-201ENST00000263398 RCAN3Q9UKA8 241 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms