RNA–Protein interactions for RNA: ENST00000261726.10

CUX2-201, Transcript of cut like homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CUX2, Length 6,844 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-201ENST00000261726 TPRNQ4KMQ1 711 aa18.98■□□□□ 0.63
CUX2-201ENST00000261726 C14orf37Q86TY3 774 aa18.98■□□□□ 0.63
CUX2-201ENST00000261726 NCLP19338 710 aaKnown RBP18.96■□□□□ 0.63
CUX2-201ENST00000261726 MRS2Q9HD23 443 aa18.95■□□□□ 0.62
CUX2-201ENST00000261726 CSRNP3Q8WYN3 585 aa18.95■□□□□ 0.62
CUX2-201ENST00000261726 TRIM44Q96DX7 344 aaPredicted RBP18.93■□□□□ 0.62
CUX2-201ENST00000261726 HIRIP3Q9BW71 556 aaPredicted RBP18.87■□□□□ 0.61
CUX2-201ENST00000261726 RSF1Q96T23 1441 aaPredicted RBP18.85■□□□□ 0.61
CUX2-201ENST00000261726 BECN1Q14457 450 aa18.85■□□□□ 0.61
CUX2-201ENST00000261726 PTMAP06454 111 aaKnown RBP18.85■□□□□ 0.61
CUX2-201ENST00000261726 ZRSR1Q15695 479 aaKnown RBP18.84■□□□□ 0.61
CUX2-201ENST00000261726 TAOK2Q9UL54 1235 aa18.84■□□□□ 0.61
CUX2-201ENST00000261726 SENP3-EIF4A1A0A087X0R7 540 aa18.83■□□□□ 0.6
CUX2-201ENST00000261726 GOLGA6L22H0YM25 854 aa18.82■□□□□ 0.6
CUX2-201ENST00000261726 DNTTIP2Q5QJE6 756 aaKnown RBP18.81■□□□□ 0.6
CUX2-201ENST00000261726 DDRGK1Q96HY6 314 aa18.79■□□□□ 0.6
CUX2-201ENST00000261726 HAP1P54257 671 aaPredicted RBP18.78■□□□□ 0.6
CUX2-201ENST00000261726 PPP1R15AO75807 674 aaPredicted RBP18.77■□□□□ 0.6
CUX2-201ENST00000261726 TNNT2P45379 298 aaPredicted RBP18.76■□□□□ 0.59
CUX2-201ENST00000261726 TSPY4P0CV99 314 aa18.74■□□□□ 0.59
CUX2-201ENST00000261726 TSPY10P0CW01 314 aa18.74■□□□□ 0.59
CUX2-201ENST00000261726 NCBP3Q53F19 620 aaKnown RBP18.74■□□□□ 0.59
CUX2-201ENST00000261726 CECR2Q9BXF3 1484 aa18.74■□□□□ 0.59
CUX2-201ENST00000261726 PPM1GO15355 546 aaPredicted RBP18.72■□□□□ 0.59
CUX2-201ENST00000261726 CASC1Q6TDU7 716 aa18.71■□□□□ 0.59
CUX2-201ENST00000261726 PLCB2Q00722 1185 aa18.7■□□□□ 0.58
CUX2-201ENST00000261726 ANP32EQ9BTT0 268 aa18.68■□□□□ 0.58
CUX2-201ENST00000261726 LAS1LQ9Y4W2 734 aaKnown RBP18.68■□□□□ 0.58
CUX2-201ENST00000261726 MIER1Q8N108 512 aa18.67■□□□□ 0.58
CUX2-201ENST00000261726 MYO15BQ96JP2 1530 aa18.67■□□□□ 0.58
CUX2-201ENST00000261726 FTSJ3Q8IY81 847 aaKnown RBP18.66■□□□□ 0.58
CUX2-201ENST00000261726 NPHP1O15259 732 aa18.65■□□□□ 0.58
CUX2-201ENST00000261726 NAP1L5Q96NT1 182 aaPredicted RBP18.65■□□□□ 0.58
CUX2-201ENST00000261726 RTN4Q9NQC3 1192 aaKnown RBP18.63■□□□□ 0.57
CUX2-201ENST00000261726 EIF4G2P78344 907 aaKnown RBP eCLIP18.63■□□□□ 0.57
CUX2-201ENST00000261726 RGL3Q3MIN7 710 aa18.62■□□□□ 0.57
CUX2-201ENST00000261726 BAZ1AQ9NRL2 1556 aaPredicted RBP18.62■□□□□ 0.57
CUX2-201ENST00000261726 RRP7BPQ9NSQ0 103 aa18.62■□□□□ 0.57
CUX2-201ENST00000261726 NEUROD2Q15784 382 aa18.61■□□□□ 0.57
CUX2-201ENST00000261726 CFAP53Q96M91 514 aa18.6■□□□□ 0.57
CUX2-201ENST00000261726 NAP1L2Q9ULW6 460 aaPredicted RBP18.59■□□□□ 0.57
CUX2-201ENST00000261726 MTUS2Q5JR59 1369 aa18.59■□□□□ 0.57
CUX2-201ENST00000261726 KCNH8Q96L42 1107 aa18.59■□□□□ 0.57
CUX2-201ENST00000261726 MROH2BQ7Z745 1585 aa18.58■□□□□ 0.57
CUX2-201ENST00000261726 LMOD2Q6P5Q4 547 aa18.58■□□□□ 0.56
CUX2-201ENST00000261726 ARID4BQ4LE39 1312 aaPredicted RBP18.56■□□□□ 0.56
CUX2-201ENST00000261726 FGD1P98174 961 aa18.55■□□□□ 0.56
CUX2-201ENST00000261726 CLSTN1O94985 981 aa18.55■□□□□ 0.56
CUX2-201ENST00000261726 OS9Q13438 667 aaPredicted RBP18.54■□□□□ 0.56
CUX2-201ENST00000261726 WIZO95785 1651 aa18.54■□□□□ 0.56
CUX2-201ENST00000261726 RGS3P49796 1198 aa18.53■□□□□ 0.56
CUX2-201ENST00000261726 GOLGA6L6A8MZA4 724 aa18.53■□□□□ 0.56
CUX2-201ENST00000261726 KNSTRNQ9Y448 316 aa18.53■□□□□ 0.56
CUX2-201ENST00000261726 HSP90AB1P08238 724 aaKnown RBP18.51■□□□□ 0.55
CUX2-201ENST00000261726 CHMP7Q8WUX9 453 aaPredicted RBP18.51■□□□□ 0.55
CUX2-201ENST00000261726 FRAT1Q92837 279 aaPredicted RBP18.51■□□□□ 0.55
CUX2-201ENST00000261726 MAPK8IP3Q9UPT6 1336 aa18.51■□□□□ 0.55
CUX2-201ENST00000261726 SUPT16HQ9Y5B9 1047 aaKnown RBP18.5■□□□□ 0.55
CUX2-201ENST00000261726 AMER1Q5JTC6 1135 aaPredicted RBP18.5■□□□□ 0.55
CUX2-201ENST00000261726 BAZ1BQ9UIG0 1483 aaKnown RBP18.5■□□□□ 0.55
CUX2-201ENST00000261726 KCNJ4P48050 445 aa18.49■□□□□ 0.55
CUX2-201ENST00000261726 ERICH6BQ5W0A0 696 aa18.49■□□□□ 0.55
CUX2-201ENST00000261726 GOLGA2Q08379 1002 aa18.48■□□□□ 0.55
CUX2-201ENST00000261726 ISY1Q9ULR0 285 aaKnown RBP18.41■□□□□ 0.54
CUX2-201ENST00000261726 GOLGA6L4A6NEF3 574 aa18.4■□□□□ 0.54
CUX2-201ENST00000261726 NRDCO43847 1150 aa18.4■□□□□ 0.54
CUX2-201ENST00000261726 CDCA8Q53HL2 280 aa18.4■□□□□ 0.54
CUX2-201ENST00000261726 CARD11Q9BXL7 1154 aa18.4■□□□□ 0.54
CUX2-201ENST00000261726 POGKQ9P215 609 aa18.4■□□□□ 0.54
CUX2-201ENST00000261726 NUDCQ9Y266 331 aa18.39■□□□□ 0.54
CUX2-201ENST00000261726 U2SURPO15042 1029 aaKnown RBP18.39■□□□□ 0.53
CUX2-201ENST00000261726 SPRYD3Q8NCJ5 442 aa18.39■□□□□ 0.53
CUX2-201ENST00000261726 CC2D1BQ5T0F9 858 aaKnown RBP18.38■□□□□ 0.53
CUX2-201ENST00000261726 DRC7Q8IY82 874 aa18.37■□□□□ 0.53
CUX2-201ENST00000261726 CHAF1AQ13111 956 aaPredicted RBP18.35■□□□□ 0.53
CUX2-201ENST00000261726 NOP58Q9Y2X3 529 aaKnown RBP18.35■□□□□ 0.53
CUX2-201ENST00000261726 SOX12O15370 315 aa18.34■□□□□ 0.53
CUX2-201ENST00000261726 PLEKHD1A6NEE1 506 aa18.33■□□□□ 0.52
CUX2-201ENST00000261726 HSCBQ8IWL3 235 aa18.32■□□□□ 0.52
CUX2-201ENST00000261726 SMARCA4P51532 1647 aa18.32■□□□□ 0.52
CUX2-201ENST00000261726 MSNP26038 577 aaKnown RBP18.3■□□□□ 0.52
CUX2-201ENST00000261726 CCDC88BA6NC98 1476 aa18.29■□□□□ 0.52
CUX2-201ENST00000261726 CHMP4BQ9H444 224 aaKnown RBP18.29■□□□□ 0.52
CUX2-201ENST00000261726 PPP4R2Q9NY27 417 aa18.28■□□□□ 0.52
CUX2-201ENST00000261726 GNL2Q13823 731 aaKnown RBP18.28■□□□□ 0.52
CUX2-201ENST00000261726 B4GALNT3Q6L9W6 998 aa18.26■□□□□ 0.51
CUX2-201ENST00000261726 PNNQ9H307 717 aaKnown RBP18.26■□□□□ 0.51
CUX2-201ENST00000261726 CLIP1P30622 1438 aa18.26■□□□□ 0.51
CUX2-201ENST00000261726 TOP2AP11388 1531 aaKnown RBP18.25■□□□□ 0.51
CUX2-201ENST00000261726 MCCP23508 829 aa18.25■□□□□ 0.51
CUX2-201ENST00000261726 ARID3AQ99856 593 aa18.24■□□□□ 0.51
CUX2-201ENST00000261726 APBB1O00213 710 aa18.24■□□□□ 0.51
CUX2-201ENST00000261726 MS4A1P11836 297 aa18.24■□□□□ 0.51
CUX2-201ENST00000261726 CFDP1Q9UEE9 299 aaPredicted RBP18.23■□□□□ 0.51
CUX2-201ENST00000261726 PRM3Q9NNZ6 103 aa18.22■□□□□ 0.51
CUX2-201ENST00000261726 SMARCA2P51531 1590 aa18.21■□□□□ 0.51
CUX2-201ENST00000261726 ABCC8Q09428 1581 aa18.21■□□□□ 0.51
CUX2-201ENST00000261726 NOC3LQ8WTT2 800 aaKnown RBP18.21■□□□□ 0.51
CUX2-201ENST00000261726 KIAA2012Q0VF49 1180 aa18.2■□□□□ 0.5
CUX2-201ENST00000261726 WRNQ14191 1432 aaPredicted RBP eCLIP18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms