RNA–Protein interactions for RNA: ENST00000254066.9

RARA-201, Transcript of retinoic acid receptor alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RARA, Length 2,414 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RARA-201ENST00000254066 RRBP1Q9P2E9 1410 aaKnown RBP29.01■■■□□ 2.23
RARA-201ENST00000254066 MYT1LQ9UL68 1186 aa29■■■□□ 2.23
RARA-201ENST00000254066 FANCIQ9NVI1 1328 aa28.96■■■□□ 2.23
RARA-201ENST00000254066 TOPBP1Q92547 1522 aa28.93■■■□□ 2.22
RARA-201ENST00000254066 KCNH8Q96L42 1107 aa28.93■■■□□ 2.22
RARA-201ENST00000254066 RAPGEF2Q9Y4G8 1499 aa28.91■■■□□ 2.22
RARA-201ENST00000254066 SYNJ1O43426 1573 aa28.91■■■□□ 2.22
RARA-201ENST00000254066 IFT140Q96RY7 1462 aa28.91■■■□□ 2.22
RARA-201ENST00000254066 DNMBPQ6XZF7 1577 aa28.9■■■□□ 2.22
RARA-201ENST00000254066 CCER2I3L3R5 266 aa28.86■■■□□ 2.21
RARA-201ENST00000254066 MSH5O43196 834 aa28.85■■■□□ 2.21
RARA-201ENST00000254066 DAXXQ9UER7 740 aaPredicted RBP28.79■■■□□ 2.2
RARA-201ENST00000254066 ERICH3Q5RHP9 1530 aa28.78■■■□□ 2.2
RARA-201ENST00000254066 ARAP1Q96P48 1450 aa28.75■■■□□ 2.19
RARA-201ENST00000254066 MAPKBP1O60336 1514 aa28.74■■■□□ 2.19
RARA-201ENST00000254066 CCNB3Q8WWL7 1395 aa28.73■■■□□ 2.19
RARA-201ENST00000254066 PPP1R15AO75807 674 aaPredicted RBP28.72■■■□□ 2.19
RARA-201ENST00000254066 TIMELESSQ9UNS1 1208 aa28.7■■■□□ 2.19
RARA-201ENST00000254066 ZNF608Q9ULD9 1512 aaPredicted RBP28.68■■■□□ 2.18
RARA-201ENST00000254066 OSCARQ8IYS5 282 aa28.67■■■□□ 2.18
RARA-201ENST00000254066 DDX10Q13206 875 aaKnown RBP28.66■■■□□ 2.18
RARA-201ENST00000254066 KANK4Q5T7N3 995 aaPredicted RBP28.65■■■□□ 2.18
RARA-201ENST00000254066 POLA1P09884 1462 aaPredicted RBP28.65■■■□□ 2.18
RARA-201ENST00000254066 CDK11AQ9UQ88 783 aaPredicted RBP28.64■■■□□ 2.18
RARA-201ENST00000254066 TARBP1Q13395 1621 aaKnown RBP28.64■■■□□ 2.18
RARA-201ENST00000254066 ERICH6BQ5W0A0 696 aa28.62■■■□□ 2.17
RARA-201ENST00000254066 ITGAEP38570 1179 aa28.62■■■□□ 2.17
RARA-201ENST00000254066 EIF4G3O43432 1585 aaKnown RBP28.61■■■□□ 2.17
RARA-201ENST00000254066 PRXQ9BXM0 1461 aa28.6■■■□□ 2.17
RARA-201ENST00000254066 RAB3GAP2Q9H2M9 1393 aa28.6■■■□□ 2.17
RARA-201ENST00000254066 ANP32CO43423 234 aa28.6■■■□□ 2.17
RARA-201ENST00000254066 WDR97A6NE52 1622 aa28.59■■■□□ 2.17
RARA-201ENST00000254066 TOP2BQ02880 1626 aa28.55■■■□□ 2.16
RARA-201ENST00000254066 CUX1P39880 1505 aa28.53■■■□□ 2.16
RARA-201ENST00000254066 FGD5Q6ZNL6 1462 aa28.51■■■□□ 2.16
RARA-201ENST00000254066 TRIM52Q96A61 297 aa28.51■■■□□ 2.15
RARA-201ENST00000254066 SETD5Q9C0A6 1442 aa28.5■■■□□ 2.15
RARA-201ENST00000254066 EIF5BO60841 1220 aaKnown RBP28.49■■■□□ 2.15
RARA-201ENST00000254066 AQRO60306 1485 aaKnown RBP eCLIP28.48■■■□□ 2.154e-7■■■■□ 24.2
RARA-201ENST00000254066 RAD54L2Q9Y4B4 1467 aa28.47■■■□□ 2.15
RARA-201ENST00000254066 MAP3K1Q13233 1512 aa28.46■■■□□ 2.15
RARA-201ENST00000254066 BIVM-ERCC5R4GMW8 1640 aa28.45■■■□□ 2.14
RARA-201ENST00000254066 DEKP35659 375 aaKnown RBP28.43■■■□□ 2.14
RARA-201ENST00000254066 RANGAP1P46060 587 aaPredicted RBP28.43■■■□□ 2.14
RARA-201ENST00000254066 TDRD9Q8NDG6 1382 aaKnown RBP28.36■■■□□ 2.13
RARA-201ENST00000254066 UBE2Q2Q8WVN8 375 aa28.33■■■□□ 2.13
RARA-201ENST00000254066 PPP4R2Q9NY27 417 aa28.33■■■□□ 2.13
RARA-201ENST00000254066 ARHGAP35Q9NRY4 1499 aa28.3■■■□□ 2.12
RARA-201ENST00000254066 CHD1O14646 1710 aa28.3■■■□□ 2.12
RARA-201ENST00000254066 GRIN2BQ13224 1484 aa28.29■■■□□ 2.12
RARA-201ENST00000254066 MAGI1Q96QZ7 1491 aaPredicted RBP28.28■■■□□ 2.12
RARA-201ENST00000254066 ABCA10Q8WWZ4 1543 aa28.27■■■□□ 2.12
RARA-201ENST00000254066 TIAM1Q13009 1591 aa28.27■■■□□ 2.12
RARA-201ENST00000254066 SIN3AQ96ST3 1273 aa28.26■■■□□ 2.11
RARA-201ENST00000254066 SNAPC4Q5SXM2 1469 aa28.25■■■□□ 2.11
RARA-201ENST00000254066 GAPVD1Q14C86 1478 aa28.21■■■□□ 2.11
RARA-201ENST00000254066 FBLN2P98095 1184 aa28.21■■■□□ 2.11
RARA-201ENST00000254066 RIMBP3CA6NJZ7 1639 aa28.2■■■□□ 2.1
RARA-201ENST00000254066 RIMBP3BA6NNM3 1639 aa28.2■■■□□ 2.1
RARA-201ENST00000254066 RIMBP3Q9UFD9 1639 aa28.2■■■□□ 2.1
RARA-201ENST00000254066 HNRNPUQ00839 825 aaKnown RBP eCLIP28.19■■■□□ 2.1
RARA-201ENST00000254066 NOP58Q9Y2X3 529 aaKnown RBP28.18■■■□□ 2.1
RARA-201ENST00000254066 ABCA5Q8WWZ7 1642 aa28.17■■■□□ 2.1
RARA-201ENST00000254066 ARHGEF11O15085 1522 aa28.16■■■□□ 2.1
RARA-201ENST00000254066 PBRM1Q86U86 1689 aa28.16■■■□□ 2.1
RARA-201ENST00000254066 SYNJ2O15056 1496 aa28.15■■■□□ 2.1
RARA-201ENST00000254066 KIF27Q86VH2 1401 aa28.15■■■□□ 2.1
RARA-201ENST00000254066 CHMP7Q8WUX9 453 aaPredicted RBP28.14■■■□□ 2.1
RARA-201ENST00000254066 LRRC9Q6ZRR7 1453 aa28.14■■■□□ 2.1
RARA-201ENST00000254066 ANO8Q9HCE9 1232 aaPredicted RBP28.13■■■□□ 2.09
RARA-201ENST00000254066 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.12■■■□□ 2.09
RARA-201ENST00000254066 FHAD1B1AJZ9 1412 aa28.08■■■□□ 2.08
RARA-201ENST00000254066 IRX6P78412 446 aaPredicted RBP28.07■■■□□ 2.08
RARA-201ENST00000254066 HIRIP3Q9BW71 556 aaPredicted RBP28.06■■■□□ 2.08
RARA-201ENST00000254066 PHLDB1Q86UU1 1377 aa28.05■■■□□ 2.08
RARA-201ENST00000254066 TONSLQ96HA7 1378 aa28.05■■■□□ 2.08
RARA-201ENST00000254066 CLASP1Q7Z460 1538 aa28.04■■■□□ 2.08
RARA-201ENST00000254066 CFAP43Q8NDM7 1665 aa28.02■■■□□ 2.08
RARA-201ENST00000254066 ADAMTS12P58397 1594 aa27.93■■■□□ 2.06
RARA-201ENST00000254066 FAM50AQ14320 339 aaKnown RBP27.93■■■□□ 2.06
RARA-201ENST00000254066 RTL5Q5HYW3 569 aaPredicted RBP27.91■■■□□ 2.06
RARA-201ENST00000254066 ZBED9Q6R2W3 1325 aa27.91■■■□□ 2.06
RARA-201ENST00000254066 NBR1Q14596 966 aa27.9■■■□□ 2.06
RARA-201ENST00000254066 GRIN2AQ12879 1464 aa27.9■■■□□ 2.06
RARA-201ENST00000254066 NCOA2Q15596 1464 aa27.9■■■□□ 2.06
RARA-201ENST00000254066 PAK3O75914 559 aaPredicted RBP27.9■■■□□ 2.06
RARA-201ENST00000254066 IPO9Q96P70 1041 aaKnown RBP27.9■■■□□ 2.06
RARA-201ENST00000254066 B4GALNT3Q6L9W6 998 aa27.89■■■□□ 2.05
RARA-201ENST00000254066 UACAQ9BZF9 1416 aa27.88■■■□□ 2.05
RARA-201ENST00000254066 ANP32AP39687 249 aaKnown RBP27.88■■■□□ 2.05
RARA-201ENST00000254066 CYB5RLQ6IPT4 315 aa27.88■■■□□ 2.05
RARA-201ENST00000254066 KDM5BQ9UGL1 1544 aa27.83■■■□□ 2.05
RARA-201ENST00000254066 CNTLNQ9NXG0 1405 aa27.83■■■□□ 2.05
RARA-201ENST00000254066 NUP160Q12769 1436 aa27.81■■■□□ 2.04
RARA-201ENST00000254066 CCDC18Q5T9S5 1454 aa27.8■■■□□ 2.04
RARA-201ENST00000254066 ZBTB47Q9UFB7 747 aaPredicted RBP27.8■■■□□ 2.04
RARA-201ENST00000254066 WASHC2AQ641Q2 1341 aa27.79■■■□□ 2.04
RARA-201ENST00000254066 HFM1A2PYH4 1435 aa27.78■■■□□ 2.04
RARA-201ENST00000254066 SALL2Q9Y467 1007 aaPredicted RBP27.74■■■□□ 2.03
RARA-201ENST00000254066 PCF11O94913 1555 aaKnown RBP27.74■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms