RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 DNMBPQ6XZF7 1577 aa27.16■■□□□ 1.94
CPSF3-201ENST00000238112 PHLDB1Q86UU1 1377 aa27.14■■□□□ 1.94
CPSF3-201ENST00000238112 SETD5Q9C0A6 1442 aa27.13■■□□□ 1.93
CPSF3-201ENST00000238112 PCF11O94913 1555 aaKnown RBP27.13■■□□□ 1.93
CPSF3-201ENST00000238112 CFAP43Q8NDM7 1665 aa27.13■■□□□ 1.93
CPSF3-201ENST00000238112 ABCA10Q8WWZ4 1543 aa27.12■■□□□ 1.93
CPSF3-201ENST00000238112 P3H3Q8IVL6 736 aa27.12■■□□□ 1.93
CPSF3-201ENST00000238112 RAD54L2Q9Y4B4 1467 aa27.11■■□□□ 1.93
CPSF3-201ENST00000238112 MAPKBP1O60336 1514 aa27.1■■□□□ 1.93
CPSF3-201ENST00000238112 FAM50AQ14320 339 aaKnown RBP27.09■■□□□ 1.93
CPSF3-201ENST00000238112 TOPBP1Q92547 1522 aa27.09■■□□□ 1.93
CPSF3-201ENST00000238112 POLA1P09884 1462 aaPredicted RBP27.09■■□□□ 1.93
CPSF3-201ENST00000238112 ATP1B4Q9UN42 357 aaPredicted RBP27.08■■□□□ 1.93
CPSF3-201ENST00000238112 FHOD3Q2V2M9 1422 aa27.06■■□□□ 1.92
CPSF3-201ENST00000238112 EFCAB5A4FU69 1503 aa27.06■■□□□ 1.92
CPSF3-201ENST00000238112 FYCO1Q9BQS8 1478 aa27.04■■□□□ 1.92
CPSF3-201ENST00000238112 CUL7Q14999 1698 aa27.02■■□□□ 1.92
CPSF3-201ENST00000238112 CASKIN1Q8WXD9 1431 aa27■■□□□ 1.91
CPSF3-201ENST00000238112 AQRO60306 1485 aaKnown RBP eCLIP26.99■■□□□ 1.911e-6■■■■□ 26.3
CPSF3-201ENST00000238112 NESP48681 1621 aa26.98■■□□□ 1.91
CPSF3-201ENST00000238112 CTTNBP2Q8WZ74 1663 aa26.95■■□□□ 1.9
CPSF3-201ENST00000238112 FMN1Q68DA7 1419 aa26.91■■□□□ 1.9
CPSF3-201ENST00000238112 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.91■■□□□ 1.9
CPSF3-201ENST00000238112 SIN3AQ96ST3 1273 aa26.87■■□□□ 1.89
CPSF3-201ENST00000238112 TIMELESSQ9UNS1 1208 aa26.85■■□□□ 1.89
CPSF3-201ENST00000238112 LAMC3Q9Y6N6 1575 aa26.85■■□□□ 1.89
CPSF3-201ENST00000238112 URB2Q14146 1524 aaKnown RBP26.84■■□□□ 1.89
CPSF3-201ENST00000238112 WDR97A6NE52 1622 aa26.83■■□□□ 1.89
CPSF3-201ENST00000238112 SNAPC4Q5SXM2 1469 aa26.81■■□□□ 1.88
CPSF3-201ENST00000238112 FGD6Q6ZV73 1430 aa26.8■■□□□ 1.88
CPSF3-201ENST00000238112 MTUS2Q5JR59 1369 aa26.79■■□□□ 1.88
CPSF3-201ENST00000238112 TDRD9Q8NDG6 1382 aaKnown RBP26.77■■□□□ 1.88
CPSF3-201ENST00000238112 ABCA5Q8WWZ7 1642 aa26.76■■□□□ 1.87
CPSF3-201ENST00000238112 GAPVD1Q14C86 1478 aa26.74■■□□□ 1.87
CPSF3-201ENST00000238112 SAMD9Q5K651 1589 aa26.74■■□□□ 1.87
CPSF3-201ENST00000238112 PDS5BQ9NTI5 1447 aa26.7■■□□□ 1.87
CPSF3-201ENST00000238112 SUPT16HQ9Y5B9 1047 aaKnown RBP26.7■■□□□ 1.86
CPSF3-201ENST00000238112 DDX10Q13206 875 aaKnown RBP26.69■■□□□ 1.86
CPSF3-201ENST00000238112 PPP1R15AO75807 674 aaPredicted RBP26.68■■□□□ 1.86
CPSF3-201ENST00000238112 CCDC18Q5T9S5 1454 aa26.67■■□□□ 1.86
CPSF3-201ENST00000238112 HFM1A2PYH4 1435 aa26.66■■□□□ 1.86
CPSF3-201ENST00000238112 GRIN2BQ13224 1484 aa26.65■■□□□ 1.86
CPSF3-201ENST00000238112 THOC2Q8NI27 1593 aaKnown RBP26.65■■□□□ 1.86
CPSF3-201ENST00000238112 KCNH8Q96L42 1107 aa26.65■■□□□ 1.86
CPSF3-201ENST00000238112 NCOA2Q15596 1464 aa26.64■■□□□ 1.86
CPSF3-201ENST00000238112 MYOM3Q5VTT5 1437 aa26.63■■□□□ 1.85
CPSF3-201ENST00000238112 TONSLQ96HA7 1378 aa26.62■■□□□ 1.85
CPSF3-201ENST00000238112 UACAQ9BZF9 1416 aa26.62■■□□□ 1.85
CPSF3-201ENST00000238112 PTPRKQ15262 1439 aa26.61■■□□□ 1.85
CPSF3-201ENST00000238112 LRRIQ1Q96JM4 1722 aa26.61■■□□□ 1.85
CPSF3-201ENST00000238112 EHBP1L1Q8N3D4 1523 aa26.6■■□□□ 1.85
CPSF3-201ENST00000238112 PTPN23Q9H3S7 1636 aa26.6■■□□□ 1.85
CPSF3-201ENST00000238112 SUPT6HQ7KZ85 1726 aaKnown RBP26.6■■□□□ 1.85
CPSF3-201ENST00000238112 NAIPQ13075 1403 aa26.54■■□□□ 1.84
CPSF3-201ENST00000238112 KIF21AQ7Z4S6 1674 aa26.54■■□□□ 1.84
CPSF3-201ENST00000238112 HIRIP3Q9BW71 556 aaPredicted RBP26.54■■□□□ 1.84
CPSF3-201ENST00000238112 MYT1Q01538 1121 aa26.51■■□□□ 1.83
CPSF3-201ENST00000238112 UGGT2Q9NYU1 1516 aa26.51■■□□□ 1.83
CPSF3-201ENST00000238112 TARBP1Q13395 1621 aaKnown RBP26.5■■□□□ 1.83
CPSF3-201ENST00000238112 ANP32CO43423 234 aa26.48■■□□□ 1.83
CPSF3-201ENST00000238112 ARHGEF11O15085 1522 aa26.47■■□□□ 1.83
CPSF3-201ENST00000238112 CCER2I3L3R5 266 aa26.45■■□□□ 1.83
CPSF3-201ENST00000238112 HECW1Q76N89 1606 aa26.44■■□□□ 1.82
CPSF3-201ENST00000238112 MAGI3Q5TCQ9 1506 aa26.44■■□□□ 1.82
CPSF3-201ENST00000238112 DNAJC5BQ9UF47 199 aa26.43■■□□□ 1.82
CPSF3-201ENST00000238112 TCOF1Q13428 1488 aaKnown RBP26.4■■□□□ 1.82
CPSF3-201ENST00000238112 PBRM1Q86U86 1689 aa26.4■■□□□ 1.82
CPSF3-201ENST00000238112 IQGAP2Q13576 1575 aa26.4■■□□□ 1.82
CPSF3-201ENST00000238112 RRP7BPQ9NSQ0 103 aa26.38■■□□□ 1.81
CPSF3-201ENST00000238112 EPRSP07814 1512 aaKnown RBP26.36■■□□□ 1.81
CPSF3-201ENST00000238112 CHIC2Q9UKJ5 165 aa26.35■■□□□ 1.81
CPSF3-201ENST00000238112 ADAMTS12P58397 1594 aa26.34■■□□□ 1.81
CPSF3-201ENST00000238112 AKNAQ7Z591 1439 aa26.33■■□□□ 1.81
CPSF3-201ENST00000238112 GCC2Q8IWJ2 1684 aa26.33■■□□□ 1.81
CPSF3-201ENST00000238112 MIA2Q96PC5 1412 aa26.31■■□□□ 1.8
CPSF3-201ENST00000238112 TRIM52Q96A61 297 aa26.3■■□□□ 1.8
CPSF3-201ENST00000238112 KDM5BQ9UGL1 1544 aa26.3■■□□□ 1.8
CPSF3-201ENST00000238112 CDK13Q14004 1512 aaKnown RBP26.29■■□□□ 1.8
CPSF3-201ENST00000238112 WDR62O43379 1518 aa26.28■■□□□ 1.8
CPSF3-201ENST00000238112 MRC2Q9UBG0 1479 aa26.27■■□□□ 1.8
CPSF3-201ENST00000238112 FKBP8Q14318 412 aa26.26■■□□□ 1.79
CPSF3-201ENST00000238112 TSHZ2Q9NRE2 1034 aa26.23■■□□□ 1.79
CPSF3-201ENST00000238112 NEFLP07196 543 aa26.23■■□□□ 1.79
CPSF3-201ENST00000238112 ARID3CA6NKF2 412 aa26.22■■□□□ 1.79
CPSF3-201ENST00000238112 BCANQ96GW7 911 aa26.22■■□□□ 1.79
CPSF3-201ENST00000238112 DENND4BO75064 1496 aaPredicted RBP26.22■■□□□ 1.79
CPSF3-201ENST00000238112 KDM6BO15054 1643 aa26.2■■□□□ 1.78
CPSF3-201ENST00000238112 MPHOSPH9Q99550 1183 aa26.19■■□□□ 1.78
CPSF3-201ENST00000238112 HSPA5P11021 654 aaKnown RBP26.16■■□□□ 1.78
CPSF3-201ENST00000238112 IFT140Q96RY7 1462 aa26.14■■□□□ 1.78
CPSF3-201ENST00000238112 EIF4G2P78344 907 aaKnown RBP eCLIP26.13■■□□□ 1.77
CPSF3-201ENST00000238112 KIAA0586Q9BVV6 1533 aa26.12■■□□□ 1.77
CPSF3-201ENST00000238112 ROCK1Q13464 1354 aa26.12■■□□□ 1.77
CPSF3-201ENST00000238112 WASHC2AQ641Q2 1341 aa26.12■■□□□ 1.77
CPSF3-201ENST00000238112 DAPK1P53355 1430 aa26.11■■□□□ 1.77
CPSF3-201ENST00000238112 ZNF608Q9ULD9 1512 aaPredicted RBP26.11■■□□□ 1.77
CPSF3-201ENST00000238112 KIAA0556O60303 1618 aa26.1■■□□□ 1.77
CPSF3-201ENST00000238112 L3MBTL2Q969R5 705 aa26.08■■□□□ 1.77
CPSF3-201ENST00000238112 DISP1Q96F81 1524 aa26.08■■□□□ 1.77
CPSF3-201ENST00000238112 FOXD1Q16676 465 aa26.06■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms