RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 TIMELESSQ9UNS1 1208 aa17.85■□□□□ 0.45
MSH2-201ENST00000233146 B4GALNT3Q6L9W6 998 aa17.84■□□□□ 0.45
MSH2-201ENST00000233146 EEA1Q15075 1411 aa17.84■□□□□ 0.45
MSH2-201ENST00000233146 CCDC88BA6NC98 1476 aa17.84■□□□□ 0.45
MSH2-201ENST00000233146 SOGA1O94964 1423 aa17.81■□□□□ 0.44
MSH2-201ENST00000233146 GOLGA3Q08378 1498 aa17.81■□□□□ 0.44
MSH2-201ENST00000233146 NEFMP07197 916 aa17.8■□□□□ 0.44
MSH2-201ENST00000233146 VPS8Q8N3P4 1428 aa17.79■□□□□ 0.44
MSH2-201ENST00000233146 CLIP1P30622 1438 aa17.78■□□□□ 0.44
MSH2-201ENST00000233146 HNRNPUQ00839 825 aaKnown RBP eCLIP17.77■□□□□ 0.44
MSH2-201ENST00000233146 CUX2O14529 1486 aa17.76■□□□□ 0.43
MSH2-201ENST00000233146 VSIG10Q8N0Z9 540 aa17.76■□□□□ 0.43
MSH2-201ENST00000233146 WDR97A6NE52 1622 aa17.72■□□□□ 0.43
MSH2-201ENST00000233146 FAM43AQ8N2R8 423 aa17.71■□□□□ 0.43
MSH2-201ENST00000233146 GSE1Q14687 1217 aa17.71■□□□□ 0.43
MSH2-201ENST00000233146 PPM1GO15355 546 aaPredicted RBP17.69■□□□□ 0.42
MSH2-201ENST00000233146 MAPKBP1O60336 1514 aa17.68■□□□□ 0.42
MSH2-201ENST00000233146 RUSC2Q8N2Y8 1516 aa17.68■□□□□ 0.42
MSH2-201ENST00000233146 LAS1LQ9Y4W2 734 aaKnown RBP17.67■□□□□ 0.42
MSH2-201ENST00000233146 CEP164Q9UPV0 1460 aa17.63■□□□□ 0.41
MSH2-201ENST00000233146 NCAPD3P42695 1498 aa17.62■□□□□ 0.41
MSH2-201ENST00000233146 RRBP1Q9P2E9 1410 aaKnown RBP17.6■□□□□ 0.41
MSH2-201ENST00000233146 MROH2BQ7Z745 1585 aa17.59■□□□□ 0.41
MSH2-201ENST00000233146 WIZO95785 1651 aa17.58■□□□□ 0.4
MSH2-201ENST00000233146 SCRIBQ14160 1630 aa17.58■□□□□ 0.4
MSH2-201ENST00000233146 FRAT1Q92837 279 aaPredicted RBP17.57■□□□□ 0.4
MSH2-201ENST00000233146 HIRIP3Q9BW71 556 aaPredicted RBP17.57■□□□□ 0.4
MSH2-201ENST00000233146 KIF21BO75037 1637 aa17.55■□□□□ 0.4
MSH2-201ENST00000233146 SMARCA2P51531 1590 aa17.53■□□□□ 0.4
MSH2-201ENST00000233146 CECR2Q9BXF3 1484 aa17.53■□□□□ 0.4
MSH2-201ENST00000233146 SIN3AQ96ST3 1273 aa17.52■□□□□ 0.39
MSH2-201ENST00000233146 BAZ1AQ9NRL2 1556 aaPredicted RBP17.51■□□□□ 0.39
MSH2-201ENST00000233146 RRP9O43818 475 aaKnown RBP17.51■□□□□ 0.39
MSH2-201ENST00000233146 PABPN1Q86U42 306 aaKnown RBP eCLIP17.51■□□□□ 0.39
MSH2-201ENST00000233146 RAB3GAP2Q9H2M9 1393 aa17.49■□□□□ 0.39
MSH2-201ENST00000233146 HSP90AA2PQ14568 343 aaPredicted RBP17.49■□□□□ 0.39
MSH2-201ENST00000233146 NPM2Q86SE8 214 aaKnown RBP17.49■□□□□ 0.39
MSH2-201ENST00000233146 PEG3Q9GZU2 1588 aa17.49■□□□□ 0.39
MSH2-201ENST00000233146 NFKBIBQ15653 356 aa17.48■□□□□ 0.39
MSH2-201ENST00000233146 ZBED9Q6R2W3 1325 aa17.48■□□□□ 0.39
MSH2-201ENST00000233146 DCAF11Q8TEB1 546 aa17.48■□□□□ 0.39
MSH2-201ENST00000233146 BAZ1BQ9UIG0 1483 aaKnown RBP17.46■□□□□ 0.39
MSH2-201ENST00000233146 RNF123Q5XPI4 1314 aa17.43■□□□□ 0.38
MSH2-201ENST00000233146 CCNB3Q8WWL7 1395 aa17.43■□□□□ 0.38
MSH2-201ENST00000233146 RBM10P98175 930 aaKnown RBP17.42■□□□□ 0.38
MSH2-201ENST00000233146 KANK4Q5T7N3 995 aaPredicted RBP17.42■□□□□ 0.38
MSH2-201ENST00000233146 RRAGDQ9NQL2 400 aaPredicted RBP17.42■□□□□ 0.38
MSH2-201ENST00000233146 AAMPQ13685 434 aa17.41■□□□□ 0.38
MSH2-201ENST00000233146 PDE4AP27815 886 aa17.4■□□□□ 0.38
MSH2-201ENST00000233146 TCERG1O14776 1098 aaKnown RBP17.39■□□□□ 0.38
MSH2-201ENST00000233146 FGD1P98174 961 aa17.39■□□□□ 0.38
MSH2-201ENST00000233146 BACH2Q9BYV9 841 aa17.39■□□□□ 0.37
MSH2-201ENST00000233146 HSP90AA1P07900 732 aaKnown RBP17.38■□□□□ 0.37
MSH2-201ENST00000233146 A0A0U1RQG5 324 aaPredicted RBP17.37■□□□□ 0.37
MSH2-201ENST00000233146 CCDC184Q52MB2 194 aa17.37■□□□□ 0.37
MSH2-201ENST00000233146 SMG6Q86US8 1419 aaKnown RBP17.36■□□□□ 0.37
MSH2-201ENST00000233146 AKNAQ7Z591 1439 aa17.36■□□□□ 0.37
MSH2-201ENST00000233146 DDRGK1Q96HY6 314 aa17.36■□□□□ 0.37
MSH2-201ENST00000233146 SETD5Q9C0A6 1442 aa17.34■□□□□ 0.37
MSH2-201ENST00000233146 MS4A1P11836 297 aa17.32■□□□□ 0.36
MSH2-201ENST00000233146 NAP1L5Q96NT1 182 aaPredicted RBP17.31■□□□□ 0.36
MSH2-201ENST00000233146 FAM9BQ8IZU0 186 aa17.29■□□□□ 0.36
MSH2-201ENST00000233146 RAPGEF2Q9Y4G8 1499 aa17.29■□□□□ 0.36
MSH2-201ENST00000233146 PDE4CQ08493 712 aa17.29■□□□□ 0.36
MSH2-201ENST00000233146 ARAP1Q96P48 1450 aa17.27■□□□□ 0.35
MSH2-201ENST00000233146 NUDCQ9Y266 331 aa17.26■□□□□ 0.35
MSH2-201ENST00000233146 PNNQ9H307 717 aaKnown RBP17.26■□□□□ 0.35
MSH2-201ENST00000233146 PRDM4Q9UKN5 801 aa17.24■□□□□ 0.35
MSH2-201ENST00000233146 SYNJ1O43426 1573 aa17.24■□□□□ 0.35
MSH2-201ENST00000233146 FRAT2O75474 233 aaPredicted RBP17.24■□□□□ 0.35
MSH2-201ENST00000233146 CLCN1P35523 988 aa17.24■□□□□ 0.35
MSH2-201ENST00000233146 CENPJQ9HC77 1338 aaPredicted RBP17.23■□□□□ 0.35
MSH2-201ENST00000233146 FHAD1B1AJZ9 1412 aa17.23■□□□□ 0.35
MSH2-201ENST00000233146 TOP2AP11388 1531 aaKnown RBP17.23■□□□□ 0.35
MSH2-201ENST00000233146 MRS2Q9HD23 443 aa17.22■□□□□ 0.35
MSH2-201ENST00000233146 RANGAP1P46060 587 aaPredicted RBP17.22■□□□□ 0.35
MSH2-201ENST00000233146 CALD1Q05682 793 aaKnown RBP17.22■□□□□ 0.35
MSH2-201ENST00000233146 NCOA2Q15596 1464 aa17.22■□□□□ 0.35
MSH2-201ENST00000233146 PRKRIP1Q9H875 184 aaPredicted RBP17.21■□□□□ 0.35
MSH2-201ENST00000233146 CNTLNQ9NXG0 1405 aa17.2■□□□□ 0.34
MSH2-201ENST00000233146 SLC4A3P48751 1232 aa17.19■□□□□ 0.34
MSH2-201ENST00000233146 TONSLQ96HA7 1378 aa17.17■□□□□ 0.34
MSH2-201ENST00000233146 L1TD1Q5T7N2 865 aaKnown RBP17.16■□□□□ 0.34
MSH2-201ENST00000233146 PDCL3Q9H2J4 239 aa17.15■□□□□ 0.34
MSH2-201ENST00000233146 PDIA4P13667 645 aaKnown RBP17.11■□□□□ 0.33
MSH2-201ENST00000233146 POGKQ9P215 609 aa17.11■□□□□ 0.33
MSH2-201ENST00000233146 EXOC6Q8TAG9 804 aa17.09■□□□□ 0.33
MSH2-201ENST00000233146 RGS3P49796 1198 aa17.09■□□□□ 0.33
MSH2-201ENST00000233146 HSPA5P11021 654 aaKnown RBP17.08■□□□□ 0.32
MSH2-201ENST00000233146 KDM5BQ9UGL1 1544 aa17.08■□□□□ 0.32
MSH2-201ENST00000233146 BCL11BQ9C0K0 894 aaPredicted RBP17.07■□□□□ 0.32
MSH2-201ENST00000233146 RRP1P56182 461 aaKnown RBP17.05■□□□□ 0.32
MSH2-201ENST00000233146 TPM2P07951 284 aa17.04■□□□□ 0.32
MSH2-201ENST00000233146 XRCC6P12956 609 aaKnown RBP eCLIP17.03■□□□□ 0.32
MSH2-201ENST00000233146 ERICH3Q5RHP9 1530 aa17.02■□□□□ 0.32
MSH2-201ENST00000233146 CCDC7Q96M83 1385 aa16.99■□□□□ 0.31
MSH2-201ENST00000233146 NCOA1Q15788 1441 aa16.99■□□□□ 0.31
MSH2-201ENST00000233146 FSD2A1L4K1 749 aa16.98■□□□□ 0.31
MSH2-201ENST00000233146 EIF4G2P78344 907 aaKnown RBP eCLIP16.97■□□□□ 0.31
MSH2-201ENST00000233146 MAP3K1Q13233 1512 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms