RNA–Protein interactions for RNA: ENST00000223398.10

CLIP2-201, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLIP2, Length 5,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-201ENST00000223398 CFDP1Q9UEE9 299 aaPredicted RBP24.93■■□□□ 1.58
CLIP2-201ENST00000223398 WDR43Q15061 677 aaKnown RBP eCLIP24.92■■□□□ 1.58
CLIP2-201ENST00000223398 TRHP20396 242 aaPredicted RBP24.91■■□□□ 1.58
CLIP2-201ENST00000223398 KIF27Q86VH2 1401 aa24.85■■□□□ 1.57
CLIP2-201ENST00000223398 FKBP8Q14318 412 aa24.83■■□□□ 1.57
CLIP2-201ENST00000223398 GOLGA3Q08378 1498 aa24.83■■□□□ 1.57
CLIP2-201ENST00000223398 HAP1P54257 671 aaPredicted RBP24.83■■□□□ 1.57
CLIP2-201ENST00000223398 MRS2Q9HD23 443 aa24.82■■□□□ 1.56
CLIP2-201ENST00000223398 DCAF1Q9Y4B6 1507 aa24.81■■□□□ 1.56
CLIP2-201ENST00000223398 CEP162Q5TB80 1403 aa24.78■■□□□ 1.56
CLIP2-201ENST00000223398 ANP32AP39687 249 aaKnown RBP24.76■■□□□ 1.55
CLIP2-201ENST00000223398 ACIN1Q9UKV3 1341 aaKnown RBP24.74■■□□□ 1.55
CLIP2-201ENST00000223398 HSP90AA1P07900 732 aaKnown RBP24.74■■□□□ 1.55
CLIP2-201ENST00000223398 EIF4G2P78344 907 aaKnown RBP eCLIP24.74■■□□□ 1.55
CLIP2-201ENST00000223398 MLECQ14165 292 aa24.72■■□□□ 1.55
CLIP2-201ENST00000223398 SENP3-EIF4A1A0A087X0R7 540 aa24.7■■□□□ 1.54
CLIP2-201ENST00000223398 EEA1Q15075 1411 aa24.7■■□□□ 1.54
CLIP2-201ENST00000223398 PPM1GO15355 546 aaPredicted RBP24.7■■□□□ 1.54
CLIP2-201ENST00000223398 LMOD2Q6P5Q4 547 aa24.7■■□□□ 1.54
CLIP2-201ENST00000223398 CECR2Q9BXF3 1484 aa24.69■■□□□ 1.54
CLIP2-201ENST00000223398 EIF4G1Q04637 1599 aaKnown RBP24.68■■□□□ 1.54
CLIP2-201ENST00000223398 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.63■■□□□ 1.53
CLIP2-201ENST00000223398 ARXQ96QS3 562 aa24.62■■□□□ 1.53
CLIP2-201ENST00000223398 UPF2Q9HAU5 1272 aaKnown RBP24.61■■□□□ 1.53
CLIP2-201ENST00000223398 BAZ1AQ9NRL2 1556 aaPredicted RBP24.61■■□□□ 1.53
CLIP2-201ENST00000223398 CCDC136Q96JN2 1154 aa24.59■■□□□ 1.53
CLIP2-201ENST00000223398 POGKQ9P215 609 aa24.59■■□□□ 1.53
CLIP2-201ENST00000223398 CUX2O14529 1486 aa24.57■■□□□ 1.52
CLIP2-201ENST00000223398 CEP164Q9UPV0 1460 aa24.57■■□□□ 1.52
CLIP2-201ENST00000223398 IRX6P78412 446 aaPredicted RBP24.57■■□□□ 1.52
CLIP2-201ENST00000223398 CARD11Q9BXL7 1154 aa24.57■■□□□ 1.52
CLIP2-201ENST00000223398 MYO15BQ96JP2 1530 aa24.56■■□□□ 1.52
CLIP2-201ENST00000223398 CCNB3Q8WWL7 1395 aa24.53■■□□□ 1.52
CLIP2-201ENST00000223398 CARMIL1Q5VZK9 1371 aa24.53■■□□□ 1.52
CLIP2-201ENST00000223398 KNSTRNQ9Y448 316 aa24.51■■□□□ 1.51
CLIP2-201ENST00000223398 MYH16Q9H6N6 1097 aa24.5■■□□□ 1.51
CLIP2-201ENST00000223398 TNIKQ9UKE5 1360 aa24.49■■□□□ 1.51
CLIP2-201ENST00000223398 MIER1Q8N108 512 aa24.48■■□□□ 1.51
CLIP2-201ENST00000223398 TNNT2P45379 298 aaPredicted RBP24.48■■□□□ 1.51
CLIP2-201ENST00000223398 CFAP53Q96M91 514 aa24.47■■□□□ 1.51
CLIP2-201ENST00000223398 SIN3AQ96ST3 1273 aa24.46■■□□□ 1.51
CLIP2-201ENST00000223398 NEUROD2Q15784 382 aa24.45■■□□□ 1.51
CLIP2-201ENST00000223398 CDCA8Q53HL2 280 aa24.44■■□□□ 1.5
CLIP2-201ENST00000223398 GGT6Q6P531 493 aa24.43■■□□□ 1.5
CLIP2-201ENST00000223398 LAS1LQ9Y4W2 734 aaKnown RBP24.42■■□□□ 1.5
CLIP2-201ENST00000223398 TDRD9Q8NDG6 1382 aaKnown RBP24.39■■□□□ 1.5
CLIP2-201ENST00000223398 SOGA1O94964 1423 aa24.39■■□□□ 1.49
CLIP2-201ENST00000223398 SOX12O15370 315 aa24.39■■□□□ 1.49
CLIP2-201ENST00000223398 SAFB2Q14151 953 aaKnown RBP eCLIP24.38■■□□□ 1.49
CLIP2-201ENST00000223398 DCAF11Q8TEB1 546 aa24.35■■□□□ 1.49
CLIP2-201ENST00000223398 PDS5BQ9NTI5 1447 aa24.34■■□□□ 1.49
CLIP2-201ENST00000223398 KANK1Q14678 1352 aa24.33■■□□□ 1.49
CLIP2-201ENST00000223398 CC2D1BQ5T0F9 858 aaKnown RBP24.31■■□□□ 1.48
CLIP2-201ENST00000223398 ANP32BQ92688 251 aaKnown RBP24.31■■□□□ 1.48
CLIP2-201ENST00000223398 FHAD1B1AJZ9 1412 aa24.31■■□□□ 1.48
CLIP2-201ENST00000223398 MAPK8IP3Q9UPT6 1336 aa24.3■■□□□ 1.48
CLIP2-201ENST00000223398 U2SURPO15042 1029 aaKnown RBP24.27■■□□□ 1.48
CLIP2-201ENST00000223398 MROH2BQ7Z745 1585 aa24.27■■□□□ 1.48
CLIP2-201ENST00000223398 CCDC88BA6NC98 1476 aa24.27■■□□□ 1.48
CLIP2-201ENST00000223398 NPHP1O15259 732 aa24.27■■□□□ 1.47
CLIP2-201ENST00000223398 STK26Q9P289 416 aa24.26■■□□□ 1.47
CLIP2-201ENST00000223398 SRPK2P78362 688 aaKnown RBP24.25■■□□□ 1.47
CLIP2-201ENST00000223398 NUDCQ9Y266 331 aa24.25■■□□□ 1.47
CLIP2-201ENST00000223398 CARMIL2Q6F5E8 1435 aa24.24■■□□□ 1.47
CLIP2-201ENST00000223398 HDGFP51858 240 aaKnown RBP24.23■■□□□ 1.47
CLIP2-201ENST00000223398 ABCC8Q09428 1581 aa24.22■■□□□ 1.47
CLIP2-201ENST00000223398 FOXD1Q16676 465 aa24.2■■□□□ 1.46
CLIP2-201ENST00000223398 FTSJ3Q8IY81 847 aaKnown RBP24.19■■□□□ 1.46
CLIP2-201ENST00000223398 SMARCA2P51531 1590 aa24.17■■□□□ 1.46
CLIP2-201ENST00000223398 TMF1P82094 1093 aa24.14■■□□□ 1.45
CLIP2-201ENST00000223398 PKD2Q13563 968 aa24.14■■□□□ 1.45
CLIP2-201ENST00000223398 NBR1Q14596 966 aa24.13■■□□□ 1.45
CLIP2-201ENST00000223398 FRAT1Q92837 279 aaPredicted RBP24.13■■□□□ 1.45
CLIP2-201ENST00000223398 EFCAB2Q5VUJ9 269 aa24.11■■□□□ 1.45
CLIP2-201ENST00000223398 KANK4Q5T7N3 995 aaPredicted RBP24.11■■□□□ 1.45
CLIP2-201ENST00000223398 PAK3O75914 559 aaPredicted RBP24.09■■□□□ 1.45
CLIP2-201ENST00000223398 ARHGAP35Q9NRY4 1499 aa24.06■■□□□ 1.44
CLIP2-201ENST00000223398 KIF3BO15066 747 aa24.05■■□□□ 1.44
CLIP2-201ENST00000223398 HNRNPMP52272 730 aaKnown RBP eCLIP24.04■■□□□ 1.44
CLIP2-201ENST00000223398 NUTM2DQ5VT03 806 aaPredicted RBP24.04■■□□□ 1.44
CLIP2-201ENST00000223398 TAOK2Q9UL54 1235 aa24.03■■□□□ 1.44
CLIP2-201ENST00000223398 MORC1Q86VD1 984 aa24.03■■□□□ 1.44
CLIP2-201ENST00000223398 SUPT16HQ9Y5B9 1047 aaKnown RBP24.02■■□□□ 1.44
CLIP2-201ENST00000223398 CADPSQ9ULU8 1353 aa24.01■■□□□ 1.43
CLIP2-201ENST00000223398 OS9Q13438 667 aaPredicted RBP24■■□□□ 1.43
CLIP2-201ENST00000223398 TPRNQ4KMQ1 711 aa24■■□□□ 1.43
CLIP2-201ENST00000223398 NUP155O75694 1391 aa23.98■■□□□ 1.43
CLIP2-201ENST00000223398 CYB5RLQ6IPT4 315 aa23.97■■□□□ 1.43
CLIP2-201ENST00000223398 JPH4Q96JJ6 628 aa23.96■■□□□ 1.43
CLIP2-201ENST00000223398 TULP1O00294 542 aaPredicted RBP23.95■■□□□ 1.42
CLIP2-201ENST00000223398 CSB-PGBD3P0DP91 1061 aa23.95■■□□□ 1.42
CLIP2-201ENST00000223398 SETD5Q9C0A6 1442 aa23.94■■□□□ 1.42
CLIP2-201ENST00000223398 HDGFL2Q7Z4V5 671 aaPredicted RBP23.93■■□□□ 1.42
CLIP2-201ENST00000223398 WIZO95785 1651 aa23.93■■□□□ 1.42
CLIP2-201ENST00000223398 VPS8Q8N3P4 1428 aa23.93■■□□□ 1.42
CLIP2-201ENST00000223398 CASC1Q6TDU7 716 aa23.92■■□□□ 1.42
CLIP2-201ENST00000223398 PNNQ9H307 717 aaKnown RBP23.92■■□□□ 1.42
CLIP2-201ENST00000223398 FMN1Q68DA7 1419 aa23.92■■□□□ 1.42
CLIP2-201ENST00000223398 RGS3P49796 1198 aa23.92■■□□□ 1.42
CLIP2-201ENST00000223398 FHOD3Q2V2M9 1422 aa23.91■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 164.7 ms