RNA–Protein interactions for RNA: ENSMUST00000004430.13

Clcn3-201, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS ALT1 TSL 1 (best) BASIC

Gene Clcn3, Length 4,175 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-201ENSMUST00000004430 Frmpd1A2AKB4 1549 aa17.71■□□□□ 0.43
Clcn3-201ENSMUST00000004430 Zbtb4Q5F293 982 aa17.7■□□□□ 0.42
Clcn3-201ENSMUST00000004430 Rtl5Q5DTT4 599 aa17.66■□□□□ 0.42
Clcn3-201ENSMUST00000004430 Wdr62Q3U3T8 1523 aa17.65■□□□□ 0.42
Clcn3-201ENSMUST00000004430 Zbtb7cQ8VCZ7 619 aa17.65■□□□□ 0.42
Clcn3-201ENSMUST00000004430 Npm1Q61937 292 aaKnown RBP17.63■□□□□ 0.41
Clcn3-201ENSMUST00000004430 P3h3Q8CG70 732 aa17.63■□□□□ 0.41
Clcn3-201ENSMUST00000004430 NeflP08551 543 aa17.62■□□□□ 0.41
Clcn3-201ENSMUST00000004430 Ubl4bQ9CQ84 188 aa17.62■□□□□ 0.41
Clcn3-201ENSMUST00000004430 Chic2Q9D9G3 165 aa17.59■□□□□ 0.41
Clcn3-201ENSMUST00000004430 TnnQ80Z71 1560 aa17.59■□□□□ 0.41
Clcn3-201ENSMUST00000004430 PtprkP35822 1457 aa17.59■□□□□ 0.41
Clcn3-201ENSMUST00000004430 Mrs2Q5NCE8 434 aa17.58■□□□□ 0.4
Clcn3-201ENSMUST00000004430 Eea1Q8BL66 1411 aa17.58■□□□□ 0.4
Clcn3-201ENSMUST00000004430 Arhgap35Q91YM2 1499 aa17.57■□□□□ 0.4
Clcn3-201ENSMUST00000004430 Setd5Q5XJV7 1441 aa17.57■□□□□ 0.4
Clcn3-201ENSMUST00000004430 Ccdc18Q640L5 1455 aa17.56■□□□□ 0.4
Clcn3-201ENSMUST00000004430 Bcl11aQ9QYE3 773 aa17.56■□□□□ 0.4
Clcn3-201ENSMUST00000004430 DaxxO35613 739 aa17.55■□□□□ 0.4
Clcn3-201ENSMUST00000004430 BlmO88700 1416 aa17.55■□□□□ 0.4
Clcn3-201ENSMUST00000004430 Wdr43Q6ZQL4 677 aaKnown RBP17.54■□□□□ 0.4
Clcn3-201ENSMUST00000004430 Lamc3Q9R0B6 1581 aa17.53■□□□□ 0.4
Clcn3-201ENSMUST00000004430 Anp32bQ9EST5 272 aaKnown RBP17.5■□□□□ 0.39
Clcn3-201ENSMUST00000004430 Shroom4Q1W617 1475 aa17.48■□□□□ 0.39
Clcn3-201ENSMUST00000004430 NrkQ9R0G8 1455 aa17.48■□□□□ 0.39
Clcn3-201ENSMUST00000004430 Eif4g1Q6NZJ6 1600 aaKnown RBP17.46■□□□□ 0.39
Clcn3-201ENSMUST00000004430 Camsap1A2AHC3 1581 aa17.45■□□□□ 0.38
Clcn3-201ENSMUST00000004430 Phldb1Q6PDH0 1371 aaKnown RBP17.42■□□□□ 0.38
Clcn3-201ENSMUST00000004430 Arap1Q4LDD4 1452 aa17.42■□□□□ 0.38
Clcn3-201ENSMUST00000004430 Cux2P70298 1426 aa17.42■□□□□ 0.38
Clcn3-201ENSMUST00000004430 Hspa5P20029 655 aaKnown RBP17.41■□□□□ 0.38
Clcn3-201ENSMUST00000004430 Baz1bQ9Z277 1479 aa17.41■□□□□ 0.38
Clcn3-201ENSMUST00000004430 ArxO35085 564 aa17.39■□□□□ 0.37
Clcn3-201ENSMUST00000004430 Grin2bQ01097 1482 aa17.38■□□□□ 0.37
Clcn3-201ENSMUST00000004430 Slc4a3P16283 1227 aa17.37■□□□□ 0.37
Clcn3-201ENSMUST00000004430 Sin3aQ60520 1274 aaKnown RBP17.37■□□□□ 0.37
Clcn3-201ENSMUST00000004430 Ncapd3Q6ZQK0 1506 aa17.36■□□□□ 0.37
Clcn3-201ENSMUST00000004430 Os9Q8K2C7 672 aa17.36■□□□□ 0.37
Clcn3-201ENSMUST00000004430 Prdm10Q3UTQ7 1184 aa17.35■□□□□ 0.37
Clcn3-201ENSMUST00000004430 Map3k1P53349 1493 aa17.35■□□□□ 0.37
Clcn3-201ENSMUST00000004430 Rad21Q61550 635 aaKnown RBP17.35■□□□□ 0.37
Clcn3-201ENSMUST00000004430 Arhgef5E9Q7D5 1581 aa17.32■□□□□ 0.36
Clcn3-201ENSMUST00000004430 Ccer2J3QPU5 274 aa17.31■□□□□ 0.36
Clcn3-201ENSMUST00000004430 Mroh2bQ7M6Y6 1581 aa17.31■□□□□ 0.36
Clcn3-201ENSMUST00000004430 Unc13aQ4KUS2 1712 aa17.3■□□□□ 0.36
Clcn3-201ENSMUST00000004430 Nolc1E9Q5C9 702 aaKnown RBP17.29■□□□□ 0.36
Clcn3-201ENSMUST00000004430 Wwc2Q6NXJ0 1187 aa17.28■□□□□ 0.36
Clcn3-201ENSMUST00000004430 LrpprcQ6PB66 1392 aaKnown RBP17.27■□□□□ 0.35
Clcn3-201ENSMUST00000004430 Supt16hQ920B9 1047 aa17.23■□□□□ 0.35
Clcn3-201ENSMUST00000004430 Carmil1Q6EDY6 1374 aa17.22■□□□□ 0.35
Clcn3-201ENSMUST00000004430 Naip1Q9QWK5 1403 aa17.21■□□□□ 0.35
Clcn3-201ENSMUST00000004430 Efcab5A0JP43 1406 aa17.21■□□□□ 0.34
Clcn3-201ENSMUST00000004430 Tiam1Q60610 1591 aa17.2■□□□□ 0.34
Clcn3-201ENSMUST00000004430 Fkbp15Q6P9Q6 1216 aaKnown RBP17.2■□□□□ 0.34
Clcn3-201ENSMUST00000004430 Ofd1Q80Z25 1017 aa17.2■□□□□ 0.34
Clcn3-201ENSMUST00000004430 Rgl3Q3UYI5 709 aa17.18■□□□□ 0.34
Clcn3-201ENSMUST00000004430 Duox2A2AQ99 1517 aa17.17■□□□□ 0.34
Clcn3-201ENSMUST00000004430 AqrQ8CFQ3 1481 aaKnown RBP17.16■□□□□ 0.34
Clcn3-201ENSMUST00000004430 Ifnlr1Q8CGK5 535 aa17.16■□□□□ 0.34
Clcn3-201ENSMUST00000004430 Ankrd26Q811D2 1581 aa17.16■□□□□ 0.34
Clcn3-201ENSMUST00000004430 PogzQ8BZH4 1409 aaKnown RBP17.16■□□□□ 0.34
Clcn3-201ENSMUST00000004430 CntlnA2AM05 1397 aa17.15■□□□□ 0.34
Clcn3-201ENSMUST00000004430 Polr3glQ8R0C0 218 aa17.14■□□□□ 0.33
Clcn3-201ENSMUST00000004430 Gm13697A2AK42 830 aa17.13■□□□□ 0.33
Clcn3-201ENSMUST00000004430 Thoc2B1AZI6 1594 aaKnown RBP17.13■□□□□ 0.33
Clcn3-201ENSMUST00000004430 Pcf11G3X9Z4 1553 aa17.13■□□□□ 0.33
Clcn3-201ENSMUST00000004430 Dhx29Q6PGC1 1365 aaKnown RBP17.13■□□□□ 0.33
Clcn3-201ENSMUST00000004430 Erich6D3Z6S9 713 aa17.11■□□□□ 0.33
Clcn3-201ENSMUST00000004430 Aebp1Q640N1 1128 aa17.11■□□□□ 0.33
Clcn3-201ENSMUST00000004430 Hsp90aa1P07901 733 aaKnown RBP17.1■□□□□ 0.33
Clcn3-201ENSMUST00000004430 Cux1P53564 1515 aa17.09■□□□□ 0.33
Clcn3-201ENSMUST00000004430 Grwd1Q810D6 446 aaKnown RBP17.09■□□□□ 0.33
Clcn3-201ENSMUST00000004430 Rangap1P46061 589 aaKnown RBP17.09■□□□□ 0.33
Clcn3-201ENSMUST00000004430 Slx4Q6P1D7 1565 aa17.07■□□□□ 0.32
Clcn3-201ENSMUST00000004430 PrkcshO08795 521 aa17.06■□□□□ 0.32
Clcn3-201ENSMUST00000004430 Fyco1Q8VDC1 1437 aa17.06■□□□□ 0.32
Clcn3-201ENSMUST00000004430 Rad54l2Q99NG0 1466 aa17.06■□□□□ 0.32
Clcn3-201ENSMUST00000004430 Erich3F6QRE9 1637 aa17.06■□□□□ 0.32
Clcn3-201ENSMUST00000004430 Ccdc27Q3V036 639 aa17.05■□□□□ 0.32
Clcn3-201ENSMUST00000004430 Exoc6Q8R313 802 aa17.05■□□□□ 0.32
Clcn3-201ENSMUST00000004430 CanxP35564 591 aaKnown RBP17.05■□□□□ 0.32
Clcn3-201ENSMUST00000004430 Apbb1Q9QXJ1 710 aa17.03■□□□□ 0.32
Clcn3-201ENSMUST00000004430 Nlrp6Q91WS2 869 aa17.02■□□□□ 0.32
Clcn3-201ENSMUST00000004430 Fam135aQ6NS59 1506 aa17.02■□□□□ 0.31
Clcn3-201ENSMUST00000004430 Znf710Q3U288 666 aa17.02■□□□□ 0.31
Clcn3-201ENSMUST00000004430 Dbr1Q923B1 550 aa17.01■□□□□ 0.31
Clcn3-201ENSMUST00000004430 SynmQ70IV5 1561 aa17■□□□□ 0.31
Clcn3-201ENSMUST00000004430 B4galnt3Q6L8S8 986 aa16.99■□□□□ 0.31
Clcn3-201ENSMUST00000004430 Mia2Q91ZV0 1396 aa16.97■□□□□ 0.31
Clcn3-201ENSMUST00000004430 Kdm5bQ80Y84 1544 aa16.96■□□□□ 0.31
Clcn3-201ENSMUST00000004430 Urb2E9Q7L1 1524 aaKnown RBP16.96■□□□□ 0.31
Clcn3-201ENSMUST00000004430 Samd9lQ69Z37 1561 aa16.96■□□□□ 0.31
Clcn3-201ENSMUST00000004430 Rpap1Q80TE0 1409 aa16.94■□□□□ 0.3
Clcn3-201ENSMUST00000004430 Polr1aO35134 1717 aaKnown RBP16.94■□□□□ 0.3
Clcn3-201ENSMUST00000004430 Lmo7E9PYF4 1699 aaKnown RBP16.94■□□□□ 0.3
Clcn3-201ENSMUST00000004430 TchhA0A0B4J1F9 1599 aa16.92■□□□□ 0.3
Clcn3-201ENSMUST00000004430 3425401B19RikD3Z1D3 1412 aa16.92■□□□□ 0.3
Clcn3-201ENSMUST00000004430 Trim30dE9PWL0 497 aa16.91■□□□□ 0.3
Clcn3-201ENSMUST00000004430 Card11Q8CIS0 1159 aa16.91■□□□□ 0.3
Clcn3-201ENSMUST00000004430 Kif27Q7M6Z4 1394 aa16.91■□□□□ 0.3
Retrieved 100 of 22,080 RNA–protein pairs in 11.6 ms