RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 TIMM21Q9BVV7 248 aa9.86□□□□□ -0.83
USP40-214ENST00000483519 DAZ1Q9NQZ3 744 aaKnown RBP9.86□□□□□ -0.83
USP40-214ENST00000483519 SPTAN1Q13813 2472 aaKnown RBP9.86□□□□□ -0.83
USP40-214ENST00000483519 IGHV3-16A0A0C4DH30 117 aa9.85□□□□□ -0.83
USP40-214ENST00000483519 IGHV3-11P01762 117 aa9.85□□□□□ -0.83
USP40-214ENST00000483519 ICOSQ9Y6W8 199 aa9.85□□□□□ -0.83
USP40-214ENST00000483519 CCDC179H3BU77 68 aa9.85□□□□□ -0.83
USP40-214ENST00000483519 IGHV3-30-3P0DP02 117 aa9.85□□□□□ -0.83
USP40-214ENST00000483519 PRSS2P07478 247 aa9.84□□□□□ -0.83
USP40-214ENST00000483519 SPANXDQ9BXN6 97 aa9.84□□□□□ -0.83
USP40-214ENST00000483519 SPANXCQ9NY87 97 aa9.84□□□□□ -0.83
USP40-214ENST00000483519 LITAFQ99732 161 aa9.84□□□□□ -0.84
USP40-214ENST00000483519 USP9YO00507 2555 aaPredicted RBP9.83□□□□□ -0.84
USP40-214ENST00000483519 FAM240AA0A1B0GVK7 77 aa9.83□□□□□ -0.84
USP40-214ENST00000483519 H7C423 109 aa9.83□□□□□ -0.84
USP40-214ENST00000483519 UBTD1Q9HAC8 227 aa9.83□□□□□ -0.84
USP40-214ENST00000483519 ZNF580Q9UK33 172 aa9.83□□□□□ -0.84
USP40-214ENST00000483519 A0A0U1RRA0 63 aa9.83□□□□□ -0.84
USP40-214ENST00000483519 GCN1Q92616 2671 aaKnown RBP9.82□□□□□ -0.84
USP40-214ENST00000483519 CD28P10747 220 aa9.82□□□□□ -0.84
USP40-214ENST00000483519 LMO4P61968 165 aa9.82□□□□□ -0.84
USP40-214ENST00000483519 MRPS36P82909 103 aaKnown RBP9.82□□□□□ -0.84
USP40-214ENST00000483519 DCANP1Q8TF63 244 aa9.82□□□□□ -0.84
USP40-214ENST00000483519 PYGO1Q9Y3Y4 419 aa9.82□□□□□ -0.84
USP40-214ENST00000483519 ADARB2-AS1A8MUL3 147 aa9.82□□□□□ -0.84
USP40-214ENST00000483519 A8MZ25 164 aa9.82□□□□□ -0.84
USP40-214ENST00000483519 MIAQ16674 131 aa9.82□□□□□ -0.84
USP40-214ENST00000483519 IGHV1-58A0A0C4DH39 117 aa9.81□□□□□ -0.84
USP40-214ENST00000483519 BPESC1Q9GZL8 116 aa9.81□□□□□ -0.84
USP40-214ENST00000483519 NDUFA12Q9UI09 145 aa9.81□□□□□ -0.84
USP40-214ENST00000483519 IGHV1OR15-1A0A075B7D0 117 aa9.8□□□□□ -0.84
USP40-214ENST00000483519 K7EMT4 169 aa9.8□□□□□ -0.84
USP40-214ENST00000483519 IGHG2P01859 326 aa9.8□□□□□ -0.84
USP40-214ENST00000483519 LST1O00453 97 aa9.8□□□□□ -0.84
USP40-214ENST00000483519 KHDC1LQ5JSQ8 128 aa9.8□□□□□ -0.84
USP40-214ENST00000483519 TENM4Q6N022 2769 aa9.79□□□□□ -0.84
USP40-214ENST00000483519 IGHV3OR16-10A0A075B7F0 116 aa9.79□□□□□ -0.84
USP40-214ENST00000483519 TRAV12-2A0A075B6T6 113 aa9.79□□□□□ -0.84
USP40-214ENST00000483519 TRAV8-3A0A0A6YYJ7 113 aa9.79□□□□□ -0.84
USP40-214ENST00000483519 DEFB121Q5J5C9 76 aa9.79□□□□□ -0.84
USP40-214ENST00000483519 PTPN13Q12923 2485 aa9.78□□□□□ -0.84
USP40-214ENST00000483519 ADAMTSL4-AS1Q5T5F5 129 aa9.78□□□□□ -0.84
USP40-214ENST00000483519 MED13LQ71F56 2210 aa9.78□□□□□ -0.84
USP40-214ENST00000483519 TMEM61Q8N0U2 210 aa9.78□□□□□ -0.84
USP40-214ENST00000483519 HRNRQ86YZ3 2850 aaPredicted RBP9.78□□□□□ -0.84
USP40-214ENST00000483519 SNRPD3P62318 126 aaKnown RBP9.77□□□□□ -0.84
USP40-214ENST00000483519 CLEC2BQ92478 149 aa9.77□□□□□ -0.84
USP40-214ENST00000483519 VSIG2Q96IQ7 327 aa9.77□□□□□ -0.84
USP40-214ENST00000483519 TINCRA0A1B0GVN0 87 aa9.77□□□□□ -0.85
USP40-214ENST00000483519 IGKV3-20P01619 116 aa9.77□□□□□ -0.85
USP40-214ENST00000483519 TRGV11A0A075B6L2 103 aa9.76□□□□□ -0.85
USP40-214ENST00000483519 TRBV7-7A0A0K0K1E9 115 aa9.76□□□□□ -0.85
USP40-214ENST00000483519 A0A1W2PPR1 153 aa9.76□□□□□ -0.85
USP40-214ENST00000483519 TIMM17BO60830 172 aa9.76□□□□□ -0.85
USP40-214ENST00000483519 LY6EQ16553 131 aa9.76□□□□□ -0.85
USP40-214ENST00000483519 BRD3OSQ6XYD6 125 aa9.76□□□□□ -0.85
USP40-214ENST00000483519 EDA2RQ9HAV5 297 aa9.76□□□□□ -0.85
USP40-214ENST00000483519 MEIG1Q5JSS6 88 aa9.76□□□□□ -0.85
USP40-214ENST00000483519 SMIM20Q8N5G0 67 aa9.76□□□□□ -0.85
USP40-214ENST00000483519 IGLV1-40P01703 118 aa9.76□□□□□ -0.85
USP40-214ENST00000483519 NPC2P61916 151 aa9.76□□□□□ -0.85
USP40-214ENST00000483519 DUX3Q96PT4 197 aa9.76□□□□□ -0.85
USP40-214ENST00000483519 SPINK13Q1W4C9 94 aa9.75□□□□□ -0.85
USP40-214ENST00000483519 TMEM101Q96IK0 257 aa9.75□□□□□ -0.85
USP40-214ENST00000483519 PRRC2AP48634 2157 aaKnown RBP9.75□□□□□ -0.85
USP40-214ENST00000483519 C4orf48Q5BLP8 95 aa9.75□□□□□ -0.85
USP40-214ENST00000483519 FAM104AQ969W3 186 aa9.75□□□□□ -0.85
USP40-214ENST00000483519 RELNP78509 3460 aa9.75□□□□□ -0.85
USP40-214ENST00000483519 ACYP1P07311 99 aa9.74□□□□□ -0.85
USP40-214ENST00000483519 H3BUX3 64 aa9.74□□□□□ -0.85
USP40-214ENST00000483519 HIST2H2BCQ6DN03 193 aa9.74□□□□□ -0.85
USP40-214ENST00000483519 Q6ZSV7 163 aa9.74□□□□□ -0.85
USP40-214ENST00000483519 A6NDX4 124 aa9.73□□□□□ -0.85
USP40-214ENST00000483519 CEMP1Q6PRD7 247 aaPredicted RBP9.73□□□□□ -0.85
USP40-214ENST00000483519 CSDC2Q9Y534 153 aaKnown RBP9.73□□□□□ -0.85
USP40-214ENST00000483519 RNASE13Q5GAN3 156 aaKnown RBP9.73□□□□□ -0.85
USP40-214ENST00000483519 BAHCC1Q9P281 2608 aa9.72□□□□□ -0.85
USP40-214ENST00000483519 RS1O15537 224 aa9.72□□□□□ -0.85
USP40-214ENST00000483519 BLCAPP62952 87 aa9.72□□□□□ -0.85
USP40-214ENST00000483519 IMUPQ9GZP8 106 aa9.72□□□□□ -0.85
USP40-214ENST00000483519 TMEM126AQ9H061 195 aa9.72□□□□□ -0.85
USP40-214ENST00000483519 K7EQG2 157 aa9.72□□□□□ -0.85
USP40-214ENST00000483519 CHCHD5Q9BSY4 110 aa9.72□□□□□ -0.85
USP40-214ENST00000483519 CIRBPQ14011 172 aaKnown RBP9.71□□□□□ -0.85
USP40-214ENST00000483519 UBE2D4Q9Y2X8 147 aa9.71□□□□□ -0.86
USP40-214ENST00000483519 IGHV3-73A0A0B4J1V6 119 aa9.7□□□□□ -0.86
USP40-214ENST00000483519 NDUFA1O15239 70 aa9.7□□□□□ -0.86
USP40-214ENST00000483519 CFHR3Q02985 330 aa9.7□□□□□ -0.86
USP40-214ENST00000483519 SVEP1Q4LDE5 3571 aa9.7□□□□□ -0.86
USP40-214ENST00000483519 CHCHD7Q9BUK0 85 aa9.69□□□□□ -0.86
USP40-214ENST00000483519 IGHV4-38-2P0DP08 117 aa9.69□□□□□ -0.86
USP40-214ENST00000483519 COPS9Q8WXC6 57 aa9.69□□□□□ -0.86
USP40-214ENST00000483519 CCL19Q99731 98 aa9.69□□□□□ -0.86
USP40-214ENST00000483519 HECTD1Q9ULT8 2610 aa9.69□□□□□ -0.86
USP40-214ENST00000483519 TMEM89A2RUT3 159 aa9.69□□□□□ -0.86
USP40-214ENST00000483519 FAM236AA0A1B0GUQ0 79 aa9.68□□□□□ -0.86
USP40-214ENST00000483519 FAM236BA0A1B0GV22 79 aa9.68□□□□□ -0.86
USP40-214ENST00000483519 COX7A2LO14548 114 aa9.68□□□□□ -0.86
USP40-214ENST00000483519 DAND5Q8N907 189 aa9.68□□□□□ -0.86
USP40-214ENST00000483519 PROK1P58294 105 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 136.7 ms