RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 A6NDN8 102 aa11.11□□□□□ -0.63
NUP54-217ENST00000514987 NMUP48645 174 aa11.11□□□□□ -0.63
NUP54-217ENST00000514987 SYNJ2BPP57105 145 aa11.11□□□□□ -0.63
NUP54-217ENST00000514987 Q5PR19 223 aa11.11□□□□□ -0.63
NUP54-217ENST00000514987 C10orf99Q6UWK7 81 aa11.11□□□□□ -0.63
NUP54-217ENST00000514987 MAPK1IP1LQ8NDC0 245 aa11.11□□□□□ -0.63
NUP54-217ENST00000514987 TOMM6Q96B49 74 aa11.11□□□□□ -0.63
NUP54-217ENST00000514987 HIGD1BQ9P298 99 aa11.11□□□□□ -0.63
NUP54-217ENST00000514987 USP9XQ93008 2570 aaPredicted RBP11.11□□□□□ -0.63
NUP54-217ENST00000514987 HOXA3O43365 443 aaPredicted RBP11.11□□□□□ -0.63
NUP54-217ENST00000514987 ZNF688P0C7X2 276 aa11.11□□□□□ -0.63
NUP54-217ENST00000514987 EDN2P20800 178 aa11.11□□□□□ -0.63
NUP54-217ENST00000514987 SYT8Q8NBV8 401 aa11.11□□□□□ -0.63
NUP54-217ENST00000514987 SPG11Q96JI7 2443 aa11.1□□□□□ -0.63
NUP54-217ENST00000514987 HOXD3P31249 432 aaPredicted RBP11.1□□□□□ -0.63
NUP54-217ENST00000514987 KIF25-AS1Q9Y6Z4 181 aa11.1□□□□□ -0.63
NUP54-217ENST00000514987 TRAV2A0A0B4J234 112 aa11.09□□□□□ -0.63
NUP54-217ENST00000514987 TRAV12-3A0A0B4J271 114 aa11.09□□□□□ -0.63
NUP54-217ENST00000514987 H7C1H1 209 aa11.09□□□□□ -0.63
NUP54-217ENST00000514987 CD7P09564 240 aa11.09□□□□□ -0.63
NUP54-217ENST00000514987 CDKN1BP46527 198 aa11.09□□□□□ -0.63
NUP54-217ENST00000514987 FOXI2Q6ZQN5 318 aa11.09□□□□□ -0.63
NUP54-217ENST00000514987 SCGB3A1Q96QR1 104 aa11.09□□□□□ -0.63
NUP54-217ENST00000514987 ACACBO00763 2458 aa11.08□□□□□ -0.63
NUP54-217ENST00000514987 VAMP3Q15836 100 aa11.08□□□□□ -0.64
NUP54-217ENST00000514987 ADAMTSL5Q6ZMM2 481 aa11.08□□□□□ -0.64
NUP54-217ENST00000514987 TMEM86BQ8N661 226 aa11.08□□□□□ -0.64
NUP54-217ENST00000514987 RPL39LQ96EH5 51 aaKnown RBP11.08□□□□□ -0.64
NUP54-217ENST00000514987 C9orf85Q96MD7 179 aa11.08□□□□□ -0.64
NUP54-217ENST00000514987 MRPL35Q9NZE8 188 aaKnown RBP11.08□□□□□ -0.64
NUP54-217ENST00000514987 PRRC2AP48634 2157 aaKnown RBP11.08□□□□□ -0.64
NUP54-217ENST00000514987 IGHV3-16A0A0C4DH30 117 aa11.07□□□□□ -0.64
NUP54-217ENST00000514987 F8VRH5 84 aa11.07□□□□□ -0.64
NUP54-217ENST00000514987 LINC00315P59091 139 aa11.07□□□□□ -0.64
NUP54-217ENST00000514987 ZC2HC1BQ5TFG8 222 aa11.07□□□□□ -0.64
NUP54-217ENST00000514987 PCP2Q8IVA1 136 aa11.07□□□□□ -0.64
NUP54-217ENST00000514987 CSTL1Q9H114 145 aa11.07□□□□□ -0.64
NUP54-217ENST00000514987 TMEM160Q9NX00 188 aa11.07□□□□□ -0.64
NUP54-217ENST00000514987 CR1P17927 2039 aa11.07□□□□□ -0.64
NUP54-217ENST00000514987 CSMD1Q96PZ7 3565 aa11.07□□□□□ -0.64
NUP54-217ENST00000514987 H3BRM9 83 aa11.07□□□□□ -0.64
NUP54-217ENST00000514987 CCL25O15444 150 aa11.07□□□□□ -0.64
NUP54-217ENST00000514987 KRTAP10-9P60411 292 aa11.07□□□□□ -0.64
NUP54-217ENST00000514987 ERASQ7Z444 233 aa11.07□□□□□ -0.64
NUP54-217ENST00000514987 PEMTQ9UBM1 199 aa11.07□□□□□ -0.64
NUP54-217ENST00000514987 SELENOKQ9Y6D0 94 aa11.07□□□□□ -0.64
NUP54-217ENST00000514987 FLNCQ14315 2725 aa11.06□□□□□ -0.64
NUP54-217ENST00000514987 IGHV1OR15-1A0A075B7D0 117 aa11.06□□□□□ -0.64
NUP54-217ENST00000514987 VCYO14598 125 aa11.06□□□□□ -0.64
NUP54-217ENST00000514987 TCTEX1D4Q5JR98 221 aa11.06□□□□□ -0.64
NUP54-217ENST00000514987 C2orf66Q6UXQ4 117 aa11.06□□□□□ -0.64
NUP54-217ENST00000514987 Q6ZVH6 145 aa11.06□□□□□ -0.64
NUP54-217ENST00000514987 Q96MF0 132 aa11.06□□□□□ -0.64
NUP54-217ENST00000514987 TRGV11A0A075B6L2 103 aa11.05□□□□□ -0.64
NUP54-217ENST00000514987 TRBV6-5A0A0K0K1A5 114 aa11.05□□□□□ -0.64
NUP54-217ENST00000514987 LINC01619G3V211 115 aa11.05□□□□□ -0.64
NUP54-217ENST00000514987 SPRY2O43597 315 aa11.05□□□□□ -0.64
NUP54-217ENST00000514987 NEXN-AS1Q8NBZ9 246 aa11.05□□□□□ -0.64
NUP54-217ENST00000514987 CHTOPQ9Y3Y2 248 aaKnown RBP11.05□□□□□ -0.64
NUP54-217ENST00000514987 CBY3A6NI87 242 aa11.04□□□□□ -0.64
NUP54-217ENST00000514987 SUMO4Q6EEV6 95 aa11.04□□□□□ -0.64
NUP54-217ENST00000514987 GTSCR1Q86UQ5 136 aa11.04□□□□□ -0.64
NUP54-217ENST00000514987 OR4C5Q8NGB2 326 aa11.04□□□□□ -0.64
NUP54-217ENST00000514987 C4orf3Q8WVX3 66 aa11.04□□□□□ -0.64
NUP54-217ENST00000514987 KIR2DL4Q99706 377 aa11.04□□□□□ -0.64
NUP54-217ENST00000514987 CYSLTR1Q9Y271 337 aa11.04□□□□□ -0.64
NUP54-217ENST00000514987 ANKRD17O75179 2603 aaKnown RBP11.04□□□□□ -0.64
NUP54-217ENST00000514987 CSPG4Q6UVK1 2322 aa11.04□□□□□ -0.64
NUP54-217ENST00000514987 IGKV2D-26A0A0A0MRZ7 120 aa11.03□□□□□ -0.64
NUP54-217ENST00000514987 A8MTW9 85 aa11.03□□□□□ -0.64
NUP54-217ENST00000514987 F5H697 171 aa11.03□□□□□ -0.64
NUP54-217ENST00000514987 FOSL1P15407 271 aa11.03□□□□□ -0.64
NUP54-217ENST00000514987 POLR2KP53803 58 aaKnown RBP11.03□□□□□ -0.64
NUP54-217ENST00000514987 COL12A1Q99715 3063 aa11.03□□□□□ -0.64
NUP54-217ENST00000514987 TCTAP57738 103 aa11.03□□□□□ -0.64
NUP54-217ENST00000514987 TAL2Q16559 108 aa11.03□□□□□ -0.64
NUP54-217ENST00000514987 SPINK13Q1W4C9 94 aa11.03□□□□□ -0.64
NUP54-217ENST00000514987 PAPPA-AS1Q5QFB9 102 aa11.03□□□□□ -0.64
NUP54-217ENST00000514987 AMTNQ6UX39 209 aa11.03□□□□□ -0.64
NUP54-217ENST00000514987 Q8N1Y9 231 aa11.03□□□□□ -0.64
NUP54-217ENST00000514987 WFDC12Q8WWY7 111 aa11.03□□□□□ -0.64
NUP54-217ENST00000514987 TMEM141Q96I45 108 aa11.03□□□□□ -0.64
NUP54-217ENST00000514987 MYO18BQ8IUG5 2567 aa11.02□□□□□ -0.64
NUP54-217ENST00000514987 MUC4Q99102 2169 aa11.02□□□□□ -0.65
NUP54-217ENST00000514987 C9orf118A6NHY6 69 aa11.02□□□□□ -0.65
NUP54-217ENST00000514987 IGKV3-20P01619 116 aa11.02□□□□□ -0.65
NUP54-217ENST00000514987 DUX5Q96PT3 197 aa11.02□□□□□ -0.65
NUP54-217ENST00000514987 TRBV25-1A0A075B6N4 114 aa11.01□□□□□ -0.65
NUP54-217ENST00000514987 TRAV12-2A0A075B6T6 113 aa11.01□□□□□ -0.65
NUP54-217ENST00000514987 TRBV27A0A0K0K1C4 114 aa11.01□□□□□ -0.65
NUP54-217ENST00000514987 BAALCQ8WXS3 180 aa11.01□□□□□ -0.65
NUP54-217ENST00000514987 CHAC1Q9BUX1 264 aa11.01□□□□□ -0.65
NUP54-217ENST00000514987 A0A087WWL8 130 aa11□□□□□ -0.65
NUP54-217ENST00000514987 SLURP1P55000 103 aa11□□□□□ -0.65
NUP54-217ENST00000514987 RIPPLY3P57055 190 aa11□□□□□ -0.65
NUP54-217ENST00000514987 AMMECR1LQ6DCA0 310 aa11□□□□□ -0.65
NUP54-217ENST00000514987 ZFP2Q6ZN57 461 aa11□□□□□ -0.65
NUP54-217ENST00000514987 TRPT1Q86TN4 253 aaKnown RBP11□□□□□ -0.65
NUP54-217ENST00000514987 KRTAP1-3Q8IUG1 177 aa11□□□□□ -0.65
NUP54-217ENST00000514987 JMJD8Q96S16 334 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms