RNA–Protein interactions for RNA: YLR220W

CCC1, Transcript of Vacuolar Fe2+/Mn2+ transporter, yeast

Gene CCC1, Length 969 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CCC1	YLR220W	FSH1	P38777	243 aa	Known RBP	16.1	■□□□□ 0.17
CCC1	YLR220W	YNL144C	P53907	740 aa		16.1	■□□□□ 0.17
CCC1	YLR220W	YDR344C	Q05510	147 aa		16.1	■□□□□ 0.17
CCC1	YLR220W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	16.1	■□□□□ 0.17	not detected
CCC1	YLR220W	SVS1	Q12254	260 aa		16.1	■□□□□ 0.17
CCC1	YLR220W	LPX1	Q12405	387 aa	Known RBP	16.1	■□□□□ 0.17
CCC1	YLR220W	RRD2	Q12461	358 aa		16.1	■□□□□ 0.17
CCC1	YLR220W	LAM1	P38851	1228 aa		16.09	■□□□□ 0.17
CCC1	YLR220W	YMR134W	P40207	237 aa		16.09	■□□□□ 0.17
CCC1	YLR220W	RTT101	P47050	842 aa		16.09	■□□□□ 0.17
CCC1	YLR220W	RFX1	P48743	811 aa		16.09	■□□□□ 0.17
CCC1	YLR220W	RPL22B	P56628	122 aa	Known RBP	16.09	■□□□□ 0.17
CCC1	YLR220W	TPO1	Q07824	586 aa		16.09	■□□□□ 0.17
CCC1	YLR220W	ENO2	P00925	437 aa	Known RBP	16.08	■□□□□ 0.16
CCC1	YLR220W	GCD6	P32501	712 aa	Known RBP	16.08	■□□□□ 0.16
CCC1	YLR220W	YHR131C	P38835	850 aa		16.08	■□□□□ 0.16
CCC1	YLR220W	AIM18	P38884	321 aa		16.08	■□□□□ 0.16
CCC1	YLR220W	BET4	Q00618	327 aa		16.08	■□□□□ 0.16
CCC1	YLR220W	LEE1	Q02799	301 aa	Known RBP	16.08	■□□□□ 0.16
CCC1	YLR220W	PIR3	Q03180	325 aa		16.08	■□□□□ 0.16
CCC1	YLR220W	ARA2	Q04212	335 aa		16.08	■□□□□ 0.16
CCC1	YLR220W	ECM38	Q05902	660 aa	Predicted RBP	16.08	■□□□□ 0.16
CCC1	YLR220W	GRX8	Q05926	109 aa		16.08	■□□□□ 0.16
CCC1	YLR220W	NOP6	Q07623	225 aa	Known RBP	16.08	■□□□□ 0.16
CCC1	YLR220W	GPM3	Q12326	303 aa		16.08	■□□□□ 0.16
CCC1	YLR220W	PPH22	P23595	377 aa		16.07	■□□□□ 0.16
CCC1	YLR220W	PUF4	P25339	888 aa	Known RBP RIP-Chip data	16.07	■□□□□ 0.16	not detected
CCC1	YLR220W	MSG5	P38590	489 aa		16.07	■□□□□ 0.16
CCC1	YLR220W	RRT5	P43607	289 aa		16.07	■□□□□ 0.16
CCC1	YLR220W	HLJ1	P48353	224 aa		16.07	■□□□□ 0.16
CCC1	YLR220W	NUR1	Q12066	484 aa		16.07	■□□□□ 0.16
CCC1	YLR220W	RIO1	Q12196	484 aa	Known RBP	16.07	■□□□□ 0.16
CCC1	YLR220W	HXT3	P32466	567 aa	Known RBP	16.06	■□□□□ 0.16
CCC1	YLR220W	ATG12	P38316	186 aa		16.06	■□□□□ 0.16
CCC1	YLR220W	NMD5	P46970	1048 aa		16.06	■□□□□ 0.16
CCC1	YLR220W	COP1	P53622	1201 aa	Known RBP	16.06	■□□□□ 0.16
CCC1	YLR220W	ATG23	Q06671	453 aa		16.06	■□□□□ 0.16
CCC1	YLR220W	SGO1	Q08490	590 aa		16.06	■□□□□ 0.16
CCC1	YLR220W	DAP1	Q12091	152 aa		16.06	■□□□□ 0.16
CCC1	YLR220W	DUG2	P38149	878 aa		16.05	■□□□□ 0.16
CCC1	YLR220W	TIF5	P38431	405 aa	Known RBP	16.05	■□□□□ 0.16
CCC1	YLR220W	SAW1	P39735	261 aa		16.05	■□□□□ 0.16
CCC1	YLR220W	EDC3	P39998	551 aa	Known RBP	16.05	■□□□□ 0.16
CCC1	YLR220W	SNG1	P46950	547 aa		16.05	■□□□□ 0.16
CCC1	YLR220W	ALY2	P47029	1046 aa		16.05	■□□□□ 0.16
CCC1	YLR220W	NSE5	Q03718	556 aa		16.05	■□□□□ 0.16
CCC1	YLR220W	RRB1	Q04225	511 aa	Known RBP	16.05	■□□□□ 0.16
CCC1	YLR220W	FAP7	Q12055	197 aa	Predicted RBP	16.05	■□□□□ 0.16
CCC1	YLR220W	SFI1	Q12369	946 aa		16.05	■□□□□ 0.16
CCC1	YLR220W	MET16	P18408	261 aa	Predicted RBP	16.04	■□□□□ 0.16
CCC1	YLR220W	RPO26	P20435	155 aa		16.04	■□□□□ 0.16
CCC1	YLR220W	YIL161W	P40449	235 aa	Known RBP	16.04	■□□□□ 0.16
CCC1	YLR220W	MNN11	P46985	422 aa	Known RBP	16.04	■□□□□ 0.16
CCC1	YLR220W	UTP6	Q02354	440 aa	Known RBP	16.04	■□□□□ 0.16
CCC1	YLR220W	APL5	Q08951	932 aa	Known RBP	16.04	■□□□□ 0.16
CCC1	YLR220W	AVL9	Q12500	764 aa		16.04	■□□□□ 0.16
CCC1	YLR220W	YML002W	P0CF17	737 aa		16.03	■□□□□ 0.16
CCC1	YLR220W	PRP9	P19736	530 aa	Known RBP	16.03	■□□□□ 0.16
CCC1	YLR220W	UBC6	P33296	250 aa	Predicted RBP	16.03	■□□□□ 0.16
CCC1	YLR220W	YKR023W	P36119	530 aa	Known RBP	16.03	■□□□□ 0.16
CCC1	YLR220W	FUI1	P38196	639 aa		16.03	■□□□□ 0.16
CCC1	YLR220W	DIA4	P38705	446 aa	Predicted RBP	16.03	■□□□□ 0.16
CCC1	YLR220W	MKT1	P40850	830 aa	Known RBP	16.03	■□□□□ 0.16
CCC1	YLR220W	INA17	Q02888	182 aa		16.03	■□□□□ 0.16
CCC1	YLR220W	BIT2	P38346	545 aa		16.02	■□□□□ 0.16
CCC1	YLR220W	KTR7	P40504	517 aa		16.02	■□□□□ 0.16
CCC1	YLR220W	MND2	P40577	368 aa		16.02	■□□□□ 0.16
CCC1	YLR220W	UFE1	P41834	346 aa		16.02	■□□□□ 0.16
CCC1	YLR220W	VPS9	P54787	451 aa		16.02	■□□□□ 0.16
CCC1	YLR220W	PML39	Q03760	334 aa		16.02	■□□□□ 0.16
CCC1	YLR220W	YOR387C	Q08910	206 aa		16.02	■□□□□ 0.16
CCC1	YLR220W	CDC8	P00572	216 aa		16.01	■□□□□ 0.15
CCC1	YLR220W	PEP5	P12868	1029 aa		16.01	■□□□□ 0.15
CCC1	YLR220W	YNL320W	P42840	284 aa		16.01	■□□□□ 0.15
CCC1	YLR220W	TCB2	P48231	1178 aa		16.01	■□□□□ 0.15
CCC1	YLR220W	COQ6	P53318	479 aa		16.01	■□□□□ 0.15
CCC1	YLR220W	YPL014W	Q02606	381 aa		16.01	■□□□□ 0.15
CCC1	YLR220W	INP2	Q03824	705 aa		16.01	■□□□□ 0.15
CCC1	YLR220W	HIS1	P00498	297 aa	Known RBP	16	■□□□□ 0.15
CCC1	YLR220W	PBP2	P38151	413 aa	Known RBP RIP-Chip data	16	■□□□□ 0.15	not detected
CCC1	YLR220W	ECM2	P38241	364 aa	Known RBP	16	■□□□□ 0.15
CCC1	YLR220W	VHC1	P38329	1120 aa		16	■□□□□ 0.15
CCC1	YLR220W	STL1	P39932	569 aa		16	■□□□□ 0.15
CCC1	YLR220W	MVP1	P40959	511 aa	Known RBP	16	■□□□□ 0.15
CCC1	YLR220W	RGD2	P43556	714 aa		16	■□□□□ 0.15
CCC1	YLR220W	PRP31	P49704	494 aa	Predicted RBP	16	■□□□□ 0.15
CCC1	YLR220W	TUB4	P53378	473 aa		16	■□□□□ 0.15
CCC1	YLR220W	YLL056C	Q12177	298 aa		16	■□□□□ 0.15
CCC1	YLR220W	EFG1	Q3E705	233 aa	Known RBP	16	■□□□□ 0.15
CCC1	YLR220W	SEC6	P32844	805 aa		15.99	■□□□□ 0.15
CCC1	YLR220W	AIM26	P32858	118 aa		15.99	■□□□□ 0.15
CCC1	YLR220W	LAS1	P36146	502 aa	Predicted RBP	15.99	■□□□□ 0.15
CCC1	YLR220W	OLA1	P38219	394 aa	Known RBP	15.99	■□□□□ 0.15
CCC1	YLR220W	POP4	P38336	279 aa		15.99	■□□□□ 0.15
CCC1	YLR220W	YJL132W	P47014	750 aa		15.99	■□□□□ 0.15
CCC1	YLR220W	YJR079W	P47126	109 aa		15.99	■□□□□ 0.15
CCC1	YLR220W	RTN1	Q04947	295 aa	Known RBP	15.99	■□□□□ 0.15
CCC1	YLR220W	YLR012C	Q07927	99 aa		15.99	■□□□□ 0.15
CCC1	YLR220W	MIS1	P09440	975 aa	Known RBP	15.98	■□□□□ 0.15
CCC1	YLR220W	ADY2	P25613	283 aa		15.98	■□□□□ 0.15

Retrieved 100 of 5,963 RNA–protein pairs in 57.6 ms