RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSL1	YLR005W	YNL146W	P53906	100 aa		4.24	□□□□□ -1.73
SSL1	YLR005W	MFB1	Q04922	465 aa		4.24	□□□□□ -1.73
SSL1	YLR005W	PSK2	Q08217	1101 aa		4.24	□□□□□ -1.73
SSL1	YLR005W	IES4	Q08561	116 aa		4.24	□□□□□ -1.73
SSL1	YLR005W	ACM1	Q08981	209 aa		4.24	□□□□□ -1.73
SSL1	YLR005W	PLP2	Q12017	286 aa		4.24	□□□□□ -1.73
SSL1	YLR005W	YPL066W	Q12194	479 aa		4.24	□□□□□ -1.73
SSL1	YLR005W	OSH2	Q12451	1283 aa		4.24	□□□□□ -1.73
SSL1	YLR005W	NBL1	Q3E7Y6	73 aa		4.24	□□□□□ -1.73
SSL1	YLR005W	HIS5	P07172	385 aa		4.23	□□□□□ -1.73
SSL1	YLR005W	SPE1	P08432	466 aa		4.23	□□□□□ -1.73
SSL1	YLR005W	MAS1	P10507	462 aa		4.23	□□□□□ -1.73
SSL1	YLR005W	FRS2	P15625	503 aa	Known RBP	4.23	□□□□□ -1.73
SSL1	YLR005W	ALG1	P16661	449 aa		4.23	□□□□□ -1.73
SSL1	YLR005W	PEX1	P24004	1043 aa		4.23	□□□□□ -1.73
SSL1	YLR005W	PGS1	P25578	521 aa		4.23	□□□□□ -1.73
SSL1	YLR005W	CTS1	P29029	562 aa		4.23	□□□□□ -1.73
SSL1	YLR005W	TRM2	P33753	639 aa		4.23	□□□□□ -1.73
SSL1	YLR005W	COY1	P34237	679 aa		4.23	□□□□□ -1.73
SSL1	YLR005W	MMS4	P38257	691 aa		4.23	□□□□□ -1.73
SSL1	YLR005W	VID24	P38263	362 aa		4.23	□□□□□ -1.73
SSL1	YLR005W	YTA12	P40341	825 aa		4.23	□□□□□ -1.73
SSL1	YLR005W	NUP82	P40368	713 aa		4.23	□□□□□ -1.73
SSL1	YLR005W	YGL176C	P46945	554 aa		4.23	□□□□□ -1.73
SSL1	YLR005W	CAF130	P53280	1122 aa	Predicted RBP	4.23	□□□□□ -1.73
SSL1	YLR005W	ALG11	P53954	548 aa	Known RBP	4.23	□□□□□ -1.73
SSL1	YLR005W	CWC21	Q03375	135 aa	Known RBP	4.23	□□□□□ -1.73
SSL1	YLR005W	YLR407W	Q06070	228 aa		4.23	□□□□□ -1.73
SSL1	YLR005W	CUR1	Q06469	252 aa		4.23	□□□□□ -1.73
SSL1	YLR005W	NSE1	Q07913	336 aa		4.23	□□□□□ -1.73
SSL1	YLR005W	GPB1	Q08886	897 aa		4.23	□□□□□ -1.73
SSL1	YLR005W	GET3	Q12154	354 aa	Known RBP	4.23	□□□□□ -1.73
SSL1	YLR005W	COX4	P04037	155 aa		4.22	□□□□□ -1.73
SSL1	YLR005W	RNR2	P09938	399 aa	Known RBP	4.22	□□□□□ -1.73
SSL1	YLR005W	CDC20	P26309	610 aa		4.22	□□□□□ -1.73
SSL1	YLR005W	SLA2	P33338	968 aa		4.22	□□□□□ -1.73
SSL1	YLR005W	YKL097C	P34245	136 aa		4.22	□□□□□ -1.73
SSL1	YLR005W	GCS1	P35197	352 aa		4.22	□□□□□ -1.73
SSL1	YLR005W	SIP3	P38717	1229 aa		4.22	□□□□□ -1.73
SSL1	YLR005W	FMO1	P38866	432 aa		4.22	□□□□□ -1.73
SSL1	YLR005W	GEM1	P39722	662 aa		4.22	□□□□□ -1.73
SSL1	YLR005W	SNF7	P39929	240 aa	Known RBP	4.22	□□□□□ -1.73
SSL1	YLR005W	YER186C	P40101	306 aa		4.22	□□□□□ -1.73
SSL1	YLR005W	HFM1	P51979	1187 aa		4.22	□□□□□ -1.73
SSL1	YLR005W	SDA1	P53313	767 aa	Known RBP	4.22	□□□□□ -1.73
SSL1	YLR005W	CBK1	P53894	756 aa		4.22	□□□□□ -1.73
SSL1	YLR005W	SEC5	P89102	971 aa		4.22	□□□□□ -1.73
SSL1	YLR005W	ADA2	Q02336	434 aa		4.22	□□□□□ -1.73
SSL1	YLR005W	RXT3	Q07458	294 aa		4.22	□□□□□ -1.73
SSL1	YLR005W	GAL80	P04387	435 aa		4.21	□□□□□ -1.74
SSL1	YLR005W	CAN1	P04817	590 aa		4.21	□□□□□ -1.74
SSL1	YLR005W	TOM70	P07213	617 aa	Known RBP	4.21	□□□□□ -1.74
SSL1	YLR005W	CDC6	P09119	513 aa		4.21	□□□□□ -1.74
SSL1	YLR005W	RPL40A	P0CH08	128 aa	Known RBP	4.21	□□□□□ -1.74
SSL1	YLR005W	RPL40B	P0CH09	128 aa	Known RBP	4.21	□□□□□ -1.74
SSL1	YLR005W	SGF29	P25554	259 aa		4.21	□□□□□ -1.74
SSL1	YLR005W	YSC83	P32792	385 aa		4.21	□□□□□ -1.74
SSL1	YLR005W	MNR2	P35724	969 aa		4.21	□□□□□ -1.74
SSL1	YLR005W	GYP8	P43570	497 aa		4.21	□□□□□ -1.74
SSL1	YLR005W	VTC2	P43585	828 aa		4.21	□□□□□ -1.74
SSL1	YLR005W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.21	□□□□□ -1.74	not detected
SSL1	YLR005W	FYV8	P46949	817 aa	Known RBP	4.21	□□□□□ -1.74
SSL1	YLR005W	FAA4	P47912	694 aa	Known RBP	4.21	□□□□□ -1.74
SSL1	YLR005W	NOP13	P53883	403 aa	Known RBP RIP-Chip data	4.21	□□□□□ -1.74	not detected
SSL1	YLR005W	VTC3	Q02725	835 aa		4.21	□□□□□ -1.74
SSL1	YLR005W	TRS130	Q03660	1102 aa		4.21	□□□□□ -1.74
SSL1	YLR005W	ESC2	Q06340	456 aa		4.21	□□□□□ -1.74
SSL1	YLR005W	HSP82	P02829	709 aa	Known RBP	4.2	□□□□□ -1.74
SSL1	YLR005W	TUF1	P02992	437 aa	Known RBP	4.2	□□□□□ -1.74
SSL1	YLR005W	PCK1	P10963	549 aa		4.2	□□□□□ -1.74
SSL1	YLR005W	HOM2	P13663	365 aa	Known RBP	4.2	□□□□□ -1.74
SSL1	YLR005W	PFK1	P16861	987 aa	Known RBP	4.2	□□□□□ -1.74
SSL1	YLR005W	VPS3	P23643	1011 aa		4.2	□□□□□ -1.74
SSL1	YLR005W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	not detected
SSL1	YLR005W	EMC1	P25574	760 aa		4.2	□□□□□ -1.74
SSL1	YLR005W	PEX34	P25584	144 aa		4.2	□□□□□ -1.74
SSL1	YLR005W	UBP13	P38187	747 aa		4.2	□□□□□ -1.74
SSL1	YLR005W	SIP5	P40210	489 aa	Known RBP	4.2	□□□□□ -1.74
SSL1	YLR005W	PSP1	P50896	841 aa	Known RBP	4.2	□□□□□ -1.74
SSL1	YLR005W	PBP1	P53297	722 aa	Known RBP	4.2	□□□□□ -1.74
SSL1	YLR005W	SPC98	P53540	846 aa		4.2	□□□□□ -1.74
SSL1	YLR005W	TMA10	Q06177	86 aa		4.2	□□□□□ -1.74
SSL1	YLR005W	PEX19	Q07418	342 aa		4.2	□□□□□ -1.74
SSL1	YLR005W	XYL2	Q07993	356 aa		4.2	□□□□□ -1.74
SSL1	YLR005W	APM4	Q99186	491 aa		4.2	□□□□□ -1.74
SSL1	YLR005W	ACC1	Q00955	2233 aa	Known RBP	4.2	□□□□□ -1.74
SSL1	YLR005W	CIT2	P08679	460 aa		4.19	□□□□□ -1.74
SSL1	YLR005W	SSB1	P11484	613 aa	Known RBP	4.19	□□□□□ -1.74
SSL1	YLR005W	PGI1	P12709	554 aa	Known RBP	4.19	□□□□□ -1.74
SSL1	YLR005W	VPS1	P21576	704 aa	Known RBP	4.19	□□□□□ -1.74
SSL1	YLR005W	PDE1	P22434	369 aa		4.19	□□□□□ -1.74
SSL1	YLR005W	DOM34	P33309	386 aa		4.19	□□□□□ -1.74
SSL1	YLR005W	LST4	P34239	828 aa		4.19	□□□□□ -1.74
SSL1	YLR005W	PCM1	P38628	557 aa	Known RBP	4.19	□□□□□ -1.74
SSL1	YLR005W	PIH1	P38768	344 aa		4.19	□□□□□ -1.74
SSL1	YLR005W	YHR054C	P38780	354 aa		4.19	□□□□□ -1.74
SSL1	YLR005W	SSB2	P40150	613 aa	Known RBP	4.19	□□□□□ -1.74
SSL1	YLR005W	TAM41	P53230	385 aa		4.19	□□□□□ -1.74
SSL1	YLR005W	SFB2	P53953	876 aa		4.19	□□□□□ -1.74
SSL1	YLR005W	STP1	Q00947	519 aa		4.19	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 31.9 ms