RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	VPS5	Q92331	675 aa		5.53	□□□□□ -1.52
CAF16	YFL028C	PSK1	P31374	1356 aa		5.53	□□□□□ -1.52
CAF16	YFL028C	RRP5	Q05022	1729 aa	Known RBP	5.52	□□□□□ -1.53
CAF16	YFL028C	IMA5	P40884	581 aa		5.52	□□□□□ -1.53
CAF16	YFL028C	BIT61	P47041	543 aa		5.52	□□□□□ -1.53
CAF16	YFL028C	NOP9	P47077	666 aa	Known RBP	5.52	□□□□□ -1.53
CAF16	YFL028C	ECL1	P48235	211 aa		5.52	□□□□□ -1.53
CAF16	YFL028C	INP52	P50942	1183 aa		5.52	□□□□□ -1.53
CAF16	YFL028C	MNT2	P53059	558 aa		5.52	□□□□□ -1.53
CAF16	YFL028C	GTR1	Q00582	310 aa		5.52	□□□□□ -1.53
CAF16	YFL028C	BLS1	Q06071	122 aa		5.52	□□□□□ -1.53
CAF16	YFL028C	HRP1	Q99383	534 aa	Known RBP	5.52	□□□□□ -1.53
CAF16	YFL028C	RPA135	P22138	1203 aa	Known RBP	5.51	□□□□□ -1.53
CAF16	YFL028C	SEC15	P22224	910 aa		5.51	□□□□□ -1.53
CAF16	YFL028C	PRP22	P24384	1145 aa	Known RBP	5.51	□□□□□ -1.53
CAF16	YFL028C	BEM3	P32873	1128 aa		5.51	□□□□□ -1.53
CAF16	YFL028C	AIM3	P38266	947 aa	Known RBP	5.51	□□□□□ -1.53
CAF16	YFL028C	ERP2	P39704	215 aa		5.51	□□□□□ -1.53
CAF16	YFL028C	SSP120	P39931	234 aa	Known RBP	5.51	□□□□□ -1.53
CAF16	YFL028C	MAD2	P40958	196 aa		5.51	□□□□□ -1.53
CAF16	YFL028C	PUS4	P48567	403 aa	Known RBP	5.51	□□□□□ -1.53
CAF16	YFL028C	CTK1	Q03957	528 aa	Known RBP	5.51	□□□□□ -1.53
CAF16	YFL028C	DBP10	Q12389	995 aa	Known RBP	5.51	□□□□□ -1.53
CAF16	YFL028C	GAS1	P22146	559 aa	Known RBP	5.5	□□□□□ -1.53
CAF16	YFL028C	KIN82	P25341	720 aa		5.5	□□□□□ -1.53
CAF16	YFL028C	PRE4	P30657	266 aa		5.5	□□□□□ -1.53
CAF16	YFL028C	YPT7	P32939	208 aa		5.5	□□□□□ -1.53
CAF16	YFL028C	SHM2	P37291	469 aa	Known RBP	5.5	□□□□□ -1.53
CAF16	YFL028C	SPC72	P39723	622 aa		5.5	□□□□□ -1.53
CAF16	YFL028C	GET2	P40056	285 aa		5.5	□□□□□ -1.53
CAF16	YFL028C	TAF1	P46677	1066 aa		5.5	□□□□□ -1.53
CAF16	YFL028C	MTL1	P53214	551 aa		5.5	□□□□□ -1.53
CAF16	YFL028C	MDR1	P53258	950 aa		5.5	□□□□□ -1.53
CAF16	YFL028C	YNR071C	P53757	342 aa		5.5	□□□□□ -1.53
CAF16	YFL028C	CIA1	Q05583	330 aa		5.5	□□□□□ -1.53
CAF16	YFL028C	TMA10	Q06177	86 aa		5.5	□□□□□ -1.53
CAF16	YFL028C	DIA2	Q08496	732 aa	Predicted RBP	5.5	□□□□□ -1.53
CAF16	YFL028C	SSP2	Q08646	371 aa		5.5	□□□□□ -1.53
CAF16	YFL028C	DIN7	Q12086	430 aa		5.5	□□□□□ -1.53
CAF16	YFL028C	POM34	Q12445	299 aa		5.5	□□□□□ -1.53
CAF16	YFL028C	MTC7	P32633	139 aa		5.49	□□□□□ -1.53
CAF16	YFL028C	SEG2	P34250	1132 aa		5.49	□□□□□ -1.53
CAF16	YFL028C	MAC1	P35192	417 aa		5.49	□□□□□ -1.53
CAF16	YFL028C	RMA1	P36001	430 aa	Known RBP	5.49	□□□□□ -1.53
CAF16	YFL028C	PPE1	P38796	400 aa		5.49	□□□□□ -1.53
CAF16	YFL028C	PRM2	P40534	656 aa		5.49	□□□□□ -1.53
CAF16	YFL028C	UBA2	P52488	636 aa		5.49	□□□□□ -1.53
CAF16	YFL028C	HOS1	Q12214	470 aa		5.49	□□□□□ -1.53
CAF16	YFL028C	ATG11	Q12527	1178 aa		5.49	□□□□□ -1.53
CAF16	YFL028C	ADE6	P38972	1358 aa	Known RBP	5.49	□□□□□ -1.53
CAF16	YFL028C	YML133C	Q03099	1374 aa		5.49	□□□□□ -1.53
CAF16	YFL028C	YLL067C	Q07888	1374 aa		5.49	□□□□□ -1.53
CAF16	YFL028C	YLL066C	Q99208	1374 aa		5.49	□□□□□ -1.53
CAF16	YFL028C	MLP1	Q02455	1875 aa	Known RBP	5.48	□□□□□ -1.53
CAF16	YFL028C	YRF1-2	P40105	1681 aa		5.48	□□□□□ -1.53
CAF16	YFL028C	SOD2	P00447	233 aa		5.48	□□□□□ -1.53
CAF16	YFL028C	PHO5	P00635	467 aa		5.48	□□□□□ -1.53
CAF16	YFL028C	HMG2	P12684	1045 aa		5.48	□□□□□ -1.53
CAF16	YFL028C	CWH43	P25618	953 aa		5.48	□□□□□ -1.53
CAF16	YFL028C	LST4	P34239	828 aa		5.48	□□□□□ -1.53
CAF16	YFL028C	LYS9	P38999	446 aa		5.48	□□□□□ -1.53
CAF16	YFL028C	PEF1	P53238	335 aa		5.48	□□□□□ -1.53
CAF16	YFL028C	SPO1	P53541	631 aa		5.48	□□□□□ -1.53
CAF16	YFL028C	TRS130	Q03660	1102 aa		5.48	□□□□□ -1.53
CAF16	YFL028C	URA3	P03962	267 aa		5.47	□□□□□ -1.53
CAF16	YFL028C	ARG1	P22768	420 aa		5.47	□□□□□ -1.53
CAF16	YFL028C	TSA1	P34760	196 aa	Known RBP	5.47	□□□□□ -1.53
CAF16	YFL028C	PSY4	P38193	441 aa		5.47	□□□□□ -1.53
CAF16	YFL028C	STT3	P39007	718 aa	Known RBP	5.47	□□□□□ -1.53
CAF16	YFL028C	COG4	Q06096	861 aa		5.47	□□□□□ -1.53
CAF16	YFL028C	RGA2	Q06407	1009 aa		5.47	□□□□□ -1.53
CAF16	YFL028C	MHP1	P43638	1398 aa		5.46	□□□□□ -1.54
CAF16	YFL028C	GFA1	P14742	717 aa	Known RBP	5.46	□□□□□ -1.54
CAF16	YFL028C	POL3	P15436	1097 aa		5.46	□□□□□ -1.54
CAF16	YFL028C	TUP1	P16649	713 aa		5.46	□□□□□ -1.54
CAF16	YFL028C	PEX1	P24004	1043 aa		5.46	□□□□□ -1.54
CAF16	YFL028C	TOD6	P34219	525 aa		5.46	□□□□□ -1.54
CAF16	YFL028C	CRG1	P38892	291 aa	RIP-Chip data	5.46	□□□□□ -1.54	not detected
CAF16	YFL028C	CCT3	P39077	534 aa	Known RBP	5.46	□□□□□ -1.54
CAF16	YFL028C	YIR042C	P40586	236 aa		5.46	□□□□□ -1.54
CAF16	YFL028C	TAH11	P47112	604 aa		5.46	□□□□□ -1.54
CAF16	YFL028C	MUP1	P50276	574 aa		5.46	□□□□□ -1.54
CAF16	YFL028C	ARC35	P53731	342 aa	Known RBP	5.46	□□□□□ -1.54
CAF16	YFL028C	ERG5	P54781	538 aa		5.46	□□□□□ -1.54
CAF16	YFL028C	RGC1	Q06108	1083 aa	Known RBP	5.46	□□□□□ -1.54
CAF16	YFL028C	THI22	Q06490	572 aa		5.46	□□□□□ -1.54
CAF16	YFL028C	YCG1	Q06680	1035 aa		5.46	□□□□□ -1.54
CAF16	YFL028C	ENB1	Q08299	606 aa		5.46	□□□□□ -1.54
CAF16	YFL028C	LAS17	Q12446	633 aa		5.46	□□□□□ -1.54
CAF16	YFL028C	YIL177C	P40434	1758 aa		5.45	□□□□□ -1.54
CAF16	YFL028C	YJL225C	P40889	1758 aa		5.45	□□□□□ -1.54
CAF16	YFL028C	LAT1	P12695	482 aa	Known RBP	5.45	□□□□□ -1.54
CAF16	YFL028C	MCM3	P24279	971 aa	Known RBP	5.45	□□□□□ -1.54
CAF16	YFL028C	GFD2	P25370	566 aa	Known RBP	5.45	□□□□□ -1.54
CAF16	YFL028C	MCM10	P32354	571 aa		5.45	□□□□□ -1.54
CAF16	YFL028C	CDS1	P38221	457 aa		5.45	□□□□□ -1.54
CAF16	YFL028C	YLF2	P38746	405 aa		5.45	□□□□□ -1.54
CAF16	YFL028C	FMO1	P38866	432 aa		5.45	□□□□□ -1.54
CAF16	YFL028C	NUP60	P39705	539 aa		5.45	□□□□□ -1.54
CAF16	YFL028C	FTR1	P40088	404 aa		5.45	□□□□□ -1.54

Retrieved 100 of 5,963 RNA–protein pairs in 10.3 ms