RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W SEC3P33332 1336 aaKnown RBP1.57□□□□□ -2.16
PRP42YDR235W CIT1P00890 479 aa1.57□□□□□ -2.16
PRP42YDR235W YPT1P01123 206 aaKnown RBP1.57□□□□□ -2.16
PRP42YDR235W RAD4P14736 754 aa1.57□□□□□ -2.16
PRP42YDR235W SEC15P22224 910 aa1.57□□□□□ -2.16
PRP42YDR235W MRPL7P36519 292 aa1.57□□□□□ -2.16
PRP42YDR235W YIR016WP40572 265 aa1.57□□□□□ -2.16
PRP42YDR235W COQ6P53318 479 aa1.57□□□□□ -2.16
PRP42YDR235W COP1P53622 1201 aaKnown RBP1.57□□□□□ -2.16
PRP42YDR235W BOP3P53958 396 aa1.57□□□□□ -2.16
PRP42YDR235W RPL15BP54780 204 aaPredicted RBP1.57□□□□□ -2.16
PRP42YDR235W PUF2Q12221 1075 aaKnown RBP RIP-Chip data1.57□□□□□ -2.16not detected
PRP42YDR235W RPS9BP05755 195 aaKnown RBP1.56□□□□□ -2.16
PRP42YDR235W YCR043CP25361 127 aa1.56□□□□□ -2.16
PRP42YDR235W FMP46P36141 133 aaKnown RBP1.56□□□□□ -2.16
PRP42YDR235W ZAP1P47043 880 aa1.56□□□□□ -2.16
PRP42YDR235W YNL018CP53976 612 aa1.56□□□□□ -2.16
PRP42YDR235W TPO3Q06451 622 aa1.56□□□□□ -2.16
PRP42YDR235W APN2P38207 520 aa1.55□□□□□ -2.16
PRP42YDR235W HUL4P40985 892 aa1.55□□□□□ -2.16
PRP42YDR235W SET2P46995 733 aaKnown RBP1.55□□□□□ -2.16
PRP42YDR235W RTA1P53047 317 aa1.55□□□□□ -2.16
PRP42YDR235W YGR125WP53273 1036 aa1.55□□□□□ -2.16
PRP42YDR235W LEE1Q02799 301 aaKnown RBP1.55□□□□□ -2.16
PRP42YDR235W YMR317WQ04893 1140 aa1.55□□□□□ -2.16
PRP42YDR235W YDL073WQ07454 984 aa1.55□□□□□ -2.16
PRP42YDR235W UBX3Q12229 455 aa1.55□□□□□ -2.16
PRP42YDR235W YMR230W-AQ3E7B5 62 aa1.55□□□□□ -2.16
PRP42YDR235W AIM17P23180 465 aaKnown RBP1.55□□□□□ -2.16
PRP42YDR235W SRP40P32583 406 aaPredicted RBP1.55□□□□□ -2.16
PRP42YDR235W YHR020WP38708 688 aaKnown RBP1.55□□□□□ -2.16
PRP42YDR235W TES1P41903 349 aaKnown RBP1.55□□□□□ -2.16
PRP42YDR235W TIM54P47045 478 aa1.55□□□□□ -2.16
PRP42YDR235W YIP4P53093 235 aa1.55□□□□□ -2.16
PRP42YDR235W PCL10P53124 433 aa1.55□□□□□ -2.16
PRP42YDR235W WRS1Q12109 432 aaKnown RBP1.55□□□□□ -2.16
PRP42YDR235W WHI2P12611 486 aa1.54□□□□□ -2.16
PRP42YDR235W YKR018CP36114 725 aa1.54□□□□□ -2.16
PRP42YDR235W YKR051WP36142 418 aa1.54□□□□□ -2.16
PRP42YDR235W EXO84P38261 753 aa1.54□□□□□ -2.16
PRP42YDR235W GND1P38720 489 aaKnown RBP1.54□□□□□ -2.16
PRP42YDR235W RPN10P38886 268 aaKnown RBP1.54□□□□□ -2.16
PRP42YDR235W YIL152WP40455 235 aa1.54□□□□□ -2.16
PRP42YDR235W IRC7P43623 340 aa1.54□□□□□ -2.16
PRP42YDR235W RPN7Q06103 429 aaKnown RBP1.54□□□□□ -2.16
PRP42YDR235W SPN1Q06505 410 aaPredicted RBP1.54□□□□□ -2.16
PRP42YDR235W CNE1P27825 502 aa1.53□□□□□ -2.16
PRP42YDR235W FAA2P39518 744 aa1.53□□□□□ -2.16
PRP42YDR235W YFL015CP43578 164 aa1.53□□□□□ -2.16
PRP42YDR235W ARP4P80428 489 aa1.53□□□□□ -2.16
PRP42YDR235W YPL071CQ02864 156 aa1.53□□□□□ -2.16
PRP42YDR235W GFD1Q04839 188 aaKnown RBP1.53□□□□□ -2.16
PRP42YDR235W ISA1Q07821 250 aaPredicted RBP1.53□□□□□ -2.16
PRP42YDR235W FLC1Q08967 793 aa1.53□□□□□ -2.16
PRP42YDR235W CAN1P04817 590 aa1.52□□□□□ -2.17
PRP42YDR235W KIN82P25341 720 aa1.52□□□□□ -2.17
PRP42YDR235W MTC2P34246 357 aa1.52□□□□□ -2.17
PRP42YDR235W MCD4P36051 919 aa1.52□□□□□ -2.17
PRP42YDR235W MFM1Q02783 413 aa1.52□□□□□ -2.17
PRP42YDR235W DSE3Q08729 430 aa1.52□□□□□ -2.17
PRP42YDR235W MIH1P23748 554 aa1.51□□□□□ -2.17
PRP42YDR235W DHH1P39517 506 aaKnown RBP1.51□□□□□ -2.17
PRP42YDR235W VRG4P40107 337 aa1.51□□□□□ -2.17
PRP42YDR235W YIL092WP40497 633 aa1.51□□□□□ -2.17
PRP42YDR235W SAE2P46946 345 aa1.51□□□□□ -2.17
PRP42YDR235W BIT61P47041 543 aa1.51□□□□□ -2.17
PRP42YDR235W FCP1Q03254 732 aa1.51□□□□□ -2.17
PRP42YDR235W YPT7P32939 208 aa1.51□□□□□ -2.17
PRP42YDR235W RPT3P33298 428 aaKnown RBP1.51□□□□□ -2.17
PRP42YDR235W PPE1P38796 400 aa1.51□□□□□ -2.17
PRP42YDR235W HOS2P53096 452 aaPredicted RBP1.51□□□□□ -2.17
PRP42YDR235W YPL216WQ08964 1102 aa1.51□□□□□ -2.17
PRP42YDR235W ATX2Q12067 313 aa1.51□□□□□ -2.17
PRP42YDR235W PRP16P15938 1071 aaPredicted RBP1.5□□□□□ -2.17
PRP42YDR235W GAL11P19659 1081 aa1.5□□□□□ -2.17
PRP42YDR235W RNR3P21672 869 aaKnown RBP1.5□□□□□ -2.17
PRP42YDR235W LSB5P25369 354 aa1.5□□□□□ -2.17
PRP42YDR235W COQ3P27680 312 aa1.5□□□□□ -2.17
PRP42YDR235W YIL169CP40442 995 aa1.5□□□□□ -2.17
PRP42YDR235W TDA10P42938 290 aa1.5□□□□□ -2.17
PRP42YDR235W BRE5P53741 515 aaKnown RBP1.5□□□□□ -2.17
PRP42YDR235W SNP1Q00916 300 aaPredicted RBP1.5□□□□□ -2.17
PRP42YDR235W YMR034CQ05131 434 aaPredicted RBP1.5□□□□□ -2.17
PRP42YDR235W BI2P03873 423 aa1.49□□□□□ -2.17
PRP42YDR235W STO1P34160 861 aaKnown RBP1.49□□□□□ -2.17
PRP42YDR235W GDH3P39708 457 aa1.49□□□□□ -2.17
PRP42YDR235W TMN3P40071 706 aa1.49□□□□□ -2.17
PRP42YDR235W SAD1P43589 448 aa1.49□□□□□ -2.17
PRP42YDR235W MAL11P53048 616 aa1.49□□□□□ -2.17
PRP42YDR235W HUL5P53119 910 aa1.49□□□□□ -2.17
PRP42YDR235W BUD17P53727 317 aa1.49□□□□□ -2.17
PRP42YDR235W EFR3Q03653 782 aaKnown RBP1.49□□□□□ -2.17
PRP42YDR235W CEF1Q03654 590 aaPredicted RBP1.49□□□□□ -2.17
PRP42YDR235W CDC9P04819 755 aa1.48□□□□□ -2.17
PRP42YDR235W ACO1P19414 778 aaKnown RBP RIP-Chip data1.48□□□□□ -2.17not detected
PRP42YDR235W PAM1P37304 830 aaKnown RBP1.48□□□□□ -2.17
PRP42YDR235W AZF1P41696 914 aa1.48□□□□□ -2.17
PRP42YDR235W CAF16P43569 289 aa1.48□□□□□ -2.17
PRP42YDR235W SNU71P53207 620 aaKnown RBP1.48□□□□□ -2.17
PRP42YDR235W SPO1P53541 631 aa1.48□□□□□ -2.17
Retrieved 100 of 5,963 RNA–protein pairs in 134.5 ms