RNA–Protein interactions for RNA: YDR120C

TRM1, Transcript of tRNA methyltransferase, yeast

Gene TRM1, Length 1,713 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRM1	YDR120C	GDB1	Q06625	1536 aa		5.03	□□□□□ -1.6
TRM1	YDR120C	ERG20	P08524	352 aa	Known RBP	5.03	□□□□□ -1.6
TRM1	YDR120C	SRP68	P38687	599 aa	Known RBP	5.03	□□□□□ -1.6
TRM1	YDR120C	BUD8	P41698	603 aa		5.03	□□□□□ -1.6
TRM1	YDR120C	RSC8	P43609	557 aa	Known RBP	5.03	□□□□□ -1.6
TRM1	YDR120C	BIT61	P47041	543 aa		5.03	□□□□□ -1.6
TRM1	YDR120C	ENP2	P48234	707 aa	Known RBP	5.03	□□□□□ -1.6
TRM1	YDR120C	TRM13	Q12383	476 aa		5.03	□□□□□ -1.6
TRM1	YDR120C	BUD3	P25558	1636 aa		5.02	□□□□□ -1.61
TRM1	YDR120C	HCM1	P25364	564 aa		5.02	□□□□□ -1.61
TRM1	YDR120C	EFT1	P32324	842 aa	Known RBP	5.02	□□□□□ -1.61
TRM1	YDR120C	IRC5	P43610	853 aa		5.02	□□□□□ -1.61
TRM1	YDR120C	PIP2	P52960	996 aa		5.02	□□□□□ -1.61
TRM1	YDR120C	NSE5	Q03718	556 aa		5.02	□□□□□ -1.61
TRM1	YDR120C	VBA4	Q04602	768 aa	Known RBP	5.02	□□□□□ -1.61
TRM1	YDR120C	MLP2	P40457	1679 aa		5.02	□□□□□ -1.61
TRM1	YDR120C	GAL1	P04385	528 aa		5.01	□□□□□ -1.61
TRM1	YDR120C	PEX1	P24004	1043 aa		5.01	□□□□□ -1.61
TRM1	YDR120C	KCC4	P25389	1037 aa		5.01	□□□□□ -1.61
TRM1	YDR120C	DGR2	P32330	852 aa		5.01	□□□□□ -1.61
TRM1	YDR120C	PXA1	P41909	870 aa		5.01	□□□□□ -1.61
TRM1	YDR120C	TAF4	P50105	388 aa		5.01	□□□□□ -1.61
TRM1	YDR120C	HOL1	P53389	586 aa		5.01	□□□□□ -1.61
TRM1	YDR120C	CNM67	P53865	581 aa	Known RBP	5.01	□□□□□ -1.61
TRM1	YDR120C	CWC2	Q12046	339 aa	Predicted RBP	5.01	□□□□□ -1.61
TRM1	YDR120C	NTO1	Q12311	748 aa		5.01	□□□□□ -1.61
TRM1	YDR120C	YEF3	P16521	1044 aa	Known RBP	5	□□□□□ -1.61
TRM1	YDR120C	ERG4	P25340	473 aa		5	□□□□□ -1.61
TRM1	YDR120C	SHM2	P37291	469 aa	Known RBP	5	□□□□□ -1.61
TRM1	YDR120C	FMO1	P38866	432 aa		5	□□□□□ -1.61
TRM1	YDR120C	RRP8	P38961	392 aa	Known RBP	5	□□□□□ -1.61
TRM1	YDR120C	NUP60	P39705	539 aa		5	□□□□□ -1.61
TRM1	YDR120C	EAF5	P39995	279 aa		5	□□□□□ -1.61
TRM1	YDR120C	OMS1	Q06668	471 aa		5	□□□□□ -1.61
TRM1	YDR120C	DIA2	Q08496	732 aa	Predicted RBP	5	□□□□□ -1.61
TRM1	YDR120C	POM34	Q12445	299 aa		5	□□□□□ -1.61
TRM1	YDR120C	HRR25	P29295	494 aa	Known RBP	5	□□□□□ -1.61
TRM1	YDR120C	DEF1	P35732	738 aa	Known RBP	5	□□□□□ -1.61
TRM1	YDR120C	KTR4	P38131	464 aa		5	□□□□□ -1.61
TRM1	YDR120C	CCT3	P39077	534 aa	Known RBP	5	□□□□□ -1.61
TRM1	YDR120C	MTD1	Q02046	320 aa	Known RBP	5	□□□□□ -1.61
TRM1	YDR120C	PPN1	Q04119	674 aa		5	□□□□□ -1.61
TRM1	YDR120C	RGC1	Q06108	1083 aa	Known RBP	5	□□□□□ -1.61
TRM1	YDR120C	THI22	Q06490	572 aa		5	□□□□□ -1.61
TRM1	YDR120C	AIM39	Q08223	395 aa		5	□□□□□ -1.61
TRM1	YDR120C	PIF1	P07271	859 aa		4.99	□□□□□ -1.61
TRM1	YDR120C	YEL076C-A	P0CX16	216 aa		4.99	□□□□□ -1.61
TRM1	YDR120C	YLR464W	P0CX17	216 aa		4.99	□□□□□ -1.61
TRM1	YDR120C	PRP22	P24384	1145 aa	Known RBP	4.99	□□□□□ -1.61
TRM1	YDR120C	KIN82	P25341	720 aa		4.99	□□□□□ -1.61
TRM1	YDR120C	PTP2	P29461	750 aa		4.99	□□□□□ -1.61
TRM1	YDR120C	PRE4	P30657	266 aa		4.99	□□□□□ -1.61
TRM1	YDR120C	YKL133C	P36066	463 aa		4.99	□□□□□ -1.61
TRM1	YDR120C	BCD1	P38772	366 aa		4.99	□□□□□ -1.61
TRM1	YDR120C	YEL076C	P39971	216 aa		4.99	□□□□□ -1.61
TRM1	YDR120C	YJL163C	P46996	555 aa		4.99	□□□□□ -1.61
TRM1	YDR120C	UBC11	P52492	156 aa		4.99	□□□□□ -1.61
TRM1	YDR120C	MLC2	Q06580	163 aa		4.99	□□□□□ -1.61
TRM1	YDR120C	FRE5	Q08908	694 aa		4.99	□□□□□ -1.61
TRM1	YDR120C	PDR15	Q04182	1529 aa	Known RBP	4.99	□□□□□ -1.61
TRM1	YDR120C	HOP1	P20050	605 aa		4.98	□□□□□ -1.61
TRM1	YDR120C	STL1	P39932	569 aa		4.98	□□□□□ -1.61
TRM1	YDR120C	YIL092W	P40497	633 aa		4.98	□□□□□ -1.61
TRM1	YDR120C	ADY4	Q05955	493 aa		4.98	□□□□□ -1.61
TRM1	YDR120C	IRC13	Q08630	104 aa		4.98	□□□□□ -1.61
TRM1	YDR120C	RPS9B	P05755	195 aa	Known RBP	4.97	□□□□□ -1.61
TRM1	YDR120C	MVD1	P32377	396 aa	Known RBP	4.97	□□□□□ -1.61
TRM1	YDR120C	MTC7	P32633	139 aa		4.97	□□□□□ -1.61
TRM1	YDR120C	YHR033W	P38690	423 aa		4.97	□□□□□ -1.61
TRM1	YDR120C	RNT1	Q02555	471 aa		4.97	□□□□□ -1.61
TRM1	YDR120C	YLR040C	Q07988	224 aa		4.97	□□□□□ -1.61
TRM1	YDR120C	ESC8	Q08119	714 aa		4.97	□□□□□ -1.61
TRM1	YDR120C	RRP6	Q12149	733 aa	Known RBP	4.97	□□□□□ -1.61
TRM1	YDR120C	BCS1	P32839	456 aa		4.97	□□□□□ -1.61
TRM1	YDR120C	IRC24	P40580	263 aa		4.97	□□□□□ -1.61
TRM1	YDR120C	TAF1	P46677	1066 aa		4.97	□□□□□ -1.61
TRM1	YDR120C	SPO1	P53541	631 aa		4.97	□□□□□ -1.61
TRM1	YDR120C	CEG1	Q01159	459 aa	Predicted RBP	4.97	□□□□□ -1.61
TRM1	YDR120C	CHC1	P22137	1653 aa	Known RBP	4.96	□□□□□ -1.62
TRM1	YDR120C	ALG7	P07286	448 aa		4.96	□□□□□ -1.62
TRM1	YDR120C	SEC15	P22224	910 aa		4.96	□□□□□ -1.62
TRM1	YDR120C	PHO3	P24031	467 aa		4.96	□□□□□ -1.62
TRM1	YDR120C	PMI40	P29952	429 aa	Known RBP	4.96	□□□□□ -1.62
TRM1	YDR120C	PMC1	P38929	1173 aa	Predicted RBP	4.96	□□□□□ -1.62
TRM1	YDR120C	PRM2	P40534	656 aa		4.96	□□□□□ -1.62
TRM1	YDR120C	HIS6	P40545	261 aa		4.96	□□□□□ -1.62
TRM1	YDR120C	PUS4	P48567	403 aa	Known RBP	4.96	□□□□□ -1.62
TRM1	YDR120C	UBX4	P54730	416 aa		4.96	□□□□□ -1.62
TRM1	YDR120C	NUR1	Q12066	484 aa		4.96	□□□□□ -1.62
TRM1	YDR120C	PSF3	Q12146	194 aa		4.96	□□□□□ -1.62
TRM1	YDR120C	VPS5	Q92331	675 aa		4.96	□□□□□ -1.62
TRM1	YDR120C	ARO1	P08566	1588 aa	Known RBP	4.95	□□□□□ -1.62
TRM1	YDR120C	FEN2	P25621	512 aa	Known RBP	4.95	□□□□□ -1.62
TRM1	YDR120C	HIS7	P33734	552 aa	Known RBP	4.95	□□□□□ -1.62
TRM1	YDR120C	CDS1	P38221	457 aa		4.95	□□□□□ -1.62
TRM1	YDR120C	RIM4	P38741	713 aa		4.95	□□□□□ -1.62
TRM1	YDR120C	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.95	□□□□□ -1.62	not detected
TRM1	YDR120C	FMP52	P40008	231 aa		4.95	□□□□□ -1.62
TRM1	YDR120C	PAN2	P53010	1115 aa	Predicted RBP	4.95	□□□□□ -1.62
TRM1	YDR120C	MNT2	P53059	558 aa		4.95	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 10.3 ms