RNA–Protein interactions for RNA: YAL059W

ECM1, Transcript of Pre-ribosomal factor involved in 60S ribosomal protein subunit export, yeast

Gene ECM1, Length 639 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ECM1	YAL059W	VHR1	P40522	640 aa		5.56	□□□□□ -1.52
ECM1	YAL059W	SEC27	P41811	889 aa	Known RBP	5.56	□□□□□ -1.52
ECM1	YAL059W	CAF16	P43569	289 aa		5.56	□□□□□ -1.52
ECM1	YAL059W	UPF3	P48412	387 aa	Known RBP	5.56	□□□□□ -1.52
ECM1	YAL059W	ZIP2	P53061	704 aa		5.56	□□□□□ -1.52
ECM1	YAL059W	AIM14	P53109	570 aa		5.56	□□□□□ -1.52
ECM1	YAL059W	CNM67	P53865	581 aa	Known RBP	5.56	□□□□□ -1.52
ECM1	YAL059W	ARA2	Q04212	335 aa		5.56	□□□□□ -1.52
ECM1	YAL059W	CIA1	Q05583	330 aa		5.56	□□□□□ -1.52
ECM1	YAL059W	CRR1	Q05790	422 aa		5.56	□□□□□ -1.52
ECM1	YAL059W	YPR027C	Q12079	277 aa		5.56	□□□□□ -1.52
ECM1	YAL059W	TUB2	P02557	457 aa	Known RBP	5.55	□□□□□ -1.52
ECM1	YAL059W	DBF4	P32325	704 aa		5.55	□□□□□ -1.52
ECM1	YAL059W	SLC1	P33333	303 aa		5.55	□□□□□ -1.52
ECM1	YAL059W	YHR218W	P38899	603 aa		5.55	□□□□□ -1.52
ECM1	YAL059W	PZF1	P39933	429 aa		5.55	□□□□□ -1.52
ECM1	YAL059W	MAM1	P40065	302 aa		5.55	□□□□□ -1.52
ECM1	YAL059W	PCL10	P53124	433 aa		5.55	□□□□□ -1.52
ECM1	YAL059W	YAP1802	P53309	568 aa		5.55	□□□□□ -1.52
ECM1	YAL059W	HEL2	Q05580	639 aa	Known RBP	5.55	□□□□□ -1.52
ECM1	YAL059W	ECM38	Q05902	660 aa	Predicted RBP	5.55	□□□□□ -1.52
ECM1	YAL059W	ATG33	Q06485	197 aa		5.55	□□□□□ -1.52
ECM1	YAL059W	CEX1	Q12453	761 aa		5.55	□□□□□ -1.52
ECM1	YAL059W	STF1	P01098	86 aa		5.54	□□□□□ -1.52
ECM1	YAL059W	HMG1	P12683	1054 aa		5.54	□□□□□ -1.52
ECM1	YAL059W	HRR25	P29295	494 aa	Known RBP	5.54	□□□□□ -1.52
ECM1	YAL059W	CTF13	P35203	478 aa		5.54	□□□□□ -1.52
ECM1	YAL059W	PPE1	P38796	400 aa		5.54	□□□□□ -1.52
ECM1	YAL059W	YEL068C	P39977	110 aa		5.54	□□□□□ -1.52
ECM1	YAL059W	PFA3	P42836	336 aa		5.54	□□□□□ -1.52
ECM1	YAL059W	TEP1	P53916	434 aa		5.54	□□□□□ -1.52
ECM1	YAL059W	ERG5	P54781	538 aa		5.54	□□□□□ -1.52
ECM1	YAL059W	ECM9	Q02202	377 aa		5.54	□□□□□ -1.52
ECM1	YAL059W	MUS81	Q04149	632 aa	Predicted RBP	5.54	□□□□□ -1.52
ECM1	YAL059W	TAF11	Q04226	346 aa		5.54	□□□□□ -1.52
ECM1	YAL059W	YCG1	Q06680	1035 aa		5.54	□□□□□ -1.52
ECM1	YAL059W	TRM11	Q12463	433 aa		5.54	□□□□□ -1.52
ECM1	YAL059W	HCA4	P20448	770 aa	Known RBP	5.53	□□□□□ -1.52
ECM1	YAL059W	HOG1	P32485	435 aa		5.53	□□□□□ -1.52
ECM1	YAL059W	ORC2	P32833	620 aa		5.53	□□□□□ -1.52
ECM1	YAL059W	TDA3	P38758	523 aa		5.53	□□□□□ -1.52
ECM1	YAL059W	CCT5	P40413	562 aa	Known RBP	5.53	□□□□□ -1.52
ECM1	YAL059W	AXL1	P40851	1208 aa		5.53	□□□□□ -1.52
ECM1	YAL059W	SMK1	P41808	388 aa		5.53	□□□□□ -1.52
ECM1	YAL059W	IRC6	P43615	237 aa		5.53	□□□□□ -1.52
ECM1	YAL059W	SAE2	P46946	345 aa		5.53	□□□□□ -1.52
ECM1	YAL059W	SET2	P46995	733 aa	Known RBP	5.53	□□□□□ -1.52
ECM1	YAL059W	CEG1	Q01159	459 aa	Predicted RBP	5.53	□□□□□ -1.52
ECM1	YAL059W	AIM39	Q08223	395 aa		5.53	□□□□□ -1.52
ECM1	YAL059W	GPR1	Q12361	961 aa		5.53	□□□□□ -1.52
ECM1	YAL059W	INO80	P53115	1489 aa		5.52	□□□□□ -1.53
ECM1	YAL059W	TRP4	P07285	380 aa	Predicted RBP	5.52	□□□□□ -1.53
ECM1	YAL059W	MET8	P15807	274 aa		5.52	□□□□□ -1.53
ECM1	YAL059W	SUI2	P20459	304 aa	Known RBP	5.52	□□□□□ -1.53
ECM1	YAL059W	RPC53	P25441	422 aa		5.52	□□□□□ -1.53
ECM1	YAL059W	EFT1	P32324	842 aa	Known RBP	5.52	□□□□□ -1.53
ECM1	YAL059W	BYE1	P36106	594 aa		5.52	□□□□□ -1.53
ECM1	YAL059W	RPP1	P38786	293 aa		5.52	□□□□□ -1.53
ECM1	YAL059W	BNA2	P47125	453 aa		5.52	□□□□□ -1.53
ECM1	YAL059W	ASK10	P48361	1146 aa		5.52	□□□□□ -1.53
ECM1	YAL059W	MRPS35	P53292	345 aa		5.52	□□□□□ -1.53
ECM1	YAL059W	MOT3	P54785	490 aa	Known RBP	5.52	□□□□□ -1.53
ECM1	YAL059W	TIM10	P87108	93 aa		5.52	□□□□□ -1.53
ECM1	YAL059W	PTA1	Q01329	785 aa	Predicted RBP	5.52	□□□□□ -1.53
ECM1	YAL059W	KIN4	Q01919	800 aa		5.52	□□□□□ -1.53
ECM1	YAL059W	ASM4	Q05166	528 aa		5.52	□□□□□ -1.53
ECM1	YAL059W	SGT2	Q12118	346 aa	Known RBP	5.52	□□□□□ -1.53
ECM1	YAL059W	DBP10	Q12389	995 aa	Known RBP	5.52	□□□□□ -1.53
ECM1	YAL059W	NOP58	Q12499	511 aa	Known RBP	5.52	□□□□□ -1.53
ECM1	YAL059W	GLK1	P17709	500 aa	Known RBP	5.51	□□□□□ -1.53
ECM1	YAL059W	NPL6	P32832	435 aa		5.51	□□□□□ -1.53
ECM1	YAL059W	RPT3	P33298	428 aa	Known RBP	5.51	□□□□□ -1.53
ECM1	YAL059W	XRS2	P33301	854 aa		5.51	□□□□□ -1.53
ECM1	YAL059W	RPN10	P38886	268 aa	Known RBP	5.51	□□□□□ -1.53
ECM1	YAL059W	TPA1	P40032	644 aa	Known RBP	5.51	□□□□□ -1.53
ECM1	YAL059W	MTR3	P48240	250 aa	Predicted RBP	5.51	□□□□□ -1.53
ECM1	YAL059W	MSE1	P48525	536 aa		5.51	□□□□□ -1.53
ECM1	YAL059W	SUN4	P53616	420 aa		5.51	□□□□□ -1.53
ECM1	YAL059W	YHM2	Q04013	314 aa		5.51	□□□□□ -1.53
ECM1	YAL059W	YLR415C	O13578	112 aa		5.5	□□□□□ -1.53
ECM1	YAL059W	RED1	P14291	827 aa		5.5	□□□□□ -1.53
ECM1	YAL059W	PDX1	P16451	410 aa		5.5	□□□□□ -1.53
ECM1	YAL059W	TRX1	P22217	103 aa	Known RBP	5.5	□□□□□ -1.53
ECM1	YAL059W	MIH1	P23748	554 aa		5.5	□□□□□ -1.53
ECM1	YAL059W	SER1	P33330	395 aa	Known RBP	5.5	□□□□□ -1.53
ECM1	YAL059W	HSL7	P38274	827 aa		5.5	□□□□□ -1.53
ECM1	YAL059W	SIC1	P38634	284 aa		5.5	□□□□□ -1.53
ECM1	YAL059W	RRF1	P38771	230 aa		5.5	□□□□□ -1.53
ECM1	YAL059W	RIC1	P40395	1056 aa		5.5	□□□□□ -1.53
ECM1	YAL059W	DPH1	P40487	425 aa	Known RBP	5.5	□□□□□ -1.53
ECM1	YAL059W	FKH2	P41813	862 aa		5.5	□□□□□ -1.53
ECM1	YAL059W	RNR4	P49723	345 aa	Known RBP	5.5	□□□□□ -1.53
ECM1	YAL059W	HLR1	Q04429	423 aa		5.5	□□□□□ -1.53
ECM1	YAL059W	UTP21	Q06078	939 aa	Predicted RBP	5.5	□□□□□ -1.53
ECM1	YAL059W	YLR040C	Q07988	224 aa		5.5	□□□□□ -1.53
ECM1	YAL059W	APL5	Q08951	932 aa	Known RBP	5.5	□□□□□ -1.53
ECM1	YAL059W	PUS9	Q12069	462 aa		5.5	□□□□□ -1.53
ECM1	YAL059W	SMF3	Q12078	473 aa	Predicted RBP	5.5	□□□□□ -1.53
ECM1	YAL059W	TRM13	Q12383	476 aa		5.5	□□□□□ -1.53
ECM1	YAL059W	YLR149C	Q99296	730 aa		5.5	□□□□□ -1.53

Retrieved 100 of 5,963 RNA–protein pairs in 56.7 ms