RNA–Protein interactions for RNA: YNL197C

WHI3, Transcript of RNA binding protein that sequesters CLN3 mRNA in cytoplasmic foci, yeast

Gene WHI3, Length 1,986 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
WHI3	YNL197C	DUN1	P39009	513 aa		4.08	□□□□□ -1.76
WHI3	YNL197C	GET2	P40056	285 aa		4.08	□□□□□ -1.76
WHI3	YNL197C	IMA5	P40884	581 aa		4.08	□□□□□ -1.76
WHI3	YNL197C	ERR3	P42222	437 aa		4.08	□□□□□ -1.76
WHI3	YNL197C	BIT61	P47041	543 aa		4.08	□□□□□ -1.76
WHI3	YNL197C	NOP9	P47077	666 aa	Known RBP	4.08	□□□□□ -1.76
WHI3	YNL197C	MNT2	P53059	558 aa		4.08	□□□□□ -1.76
WHI3	YNL197C	TAN1	P53072	289 aa	Predicted RBP	4.08	□□□□□ -1.76
WHI3	YNL197C	TEP1	P53916	434 aa		4.08	□□□□□ -1.76
WHI3	YNL197C	CDA2	Q06703	312 aa		4.08	□□□□□ -1.76
WHI3	YNL197C	PRE4	P30657	266 aa		4.07	□□□□□ -1.76
WHI3	YNL197C	LYS9	P38999	446 aa		4.07	□□□□□ -1.76
WHI3	YNL197C	NSE5	Q03718	556 aa		4.07	□□□□□ -1.76
WHI3	YNL197C	EIS1	Q05050	843 aa	Known RBP	4.07	□□□□□ -1.76
WHI3	YNL197C	YOR352W	Q08816	343 aa		4.07	□□□□□ -1.76
WHI3	YNL197C	PSF3	Q12146	194 aa		4.07	□□□□□ -1.76
WHI3	YNL197C	ARP7	Q12406	477 aa		4.07	□□□□□ -1.76
WHI3	YNL197C	SOD2	P00447	233 aa		4.07	□□□□□ -1.76
WHI3	YNL197C	NGG1	P32494	702 aa		4.07	□□□□□ -1.76
WHI3	YNL197C	MRS6	P32864	603 aa	Known RBP	4.07	□□□□□ -1.76
WHI3	YNL197C	PTH2	P34222	208 aa		4.07	□□□□□ -1.76
WHI3	YNL197C	SEG2	P34250	1132 aa		4.07	□□□□□ -1.76
WHI3	YNL197C	OMA1	P36163	345 aa		4.07	□□□□□ -1.76
WHI3	YNL197C	CDS1	P38221	457 aa		4.07	□□□□□ -1.76
WHI3	YNL197C	SCS2	P40075	244 aa	Known RBP	4.07	□□□□□ -1.76
WHI3	YNL197C	SAP185	P40856	1058 aa		4.07	□□□□□ -1.76
WHI3	YNL197C	ECL1	P48235	211 aa		4.07	□□□□□ -1.76
WHI3	YNL197C	BUL1	P48524	976 aa		4.07	□□□□□ -1.76
WHI3	YNL197C	TAF4	P50105	388 aa		4.07	□□□□□ -1.76
WHI3	YNL197C	YNR071C	P53757	342 aa		4.07	□□□□□ -1.76
WHI3	YNL197C	SEC18	P18759	758 aa	Known RBP	4.06	□□□□□ -1.76
WHI3	YNL197C	MSM1	P22438	575 aa		4.06	□□□□□ -1.76
WHI3	YNL197C	DGR2	P32330	852 aa		4.06	□□□□□ -1.76
WHI3	YNL197C	TGL1	P34163	548 aa		4.06	□□□□□ -1.76
WHI3	YNL197C	SHM2	P37291	469 aa	Known RBP	4.06	□□□□□ -1.76
WHI3	YNL197C	NAB3	P38996	802 aa	Known RBP RIP-Chip data	4.06	□□□□□ -1.76	not detected
WHI3	YNL197C	SWD1	P39706	426 aa		4.06	□□□□□ -1.76
WHI3	YNL197C	SPC72	P39723	622 aa		4.06	□□□□□ -1.76
WHI3	YNL197C	MAD3	P47074	515 aa		4.06	□□□□□ -1.76
WHI3	YNL197C	ENP2	P48234	707 aa	Known RBP	4.06	□□□□□ -1.76
WHI3	YNL197C	YDL183C	P48569	320 aa		4.06	□□□□□ -1.76
WHI3	YNL197C	SPT20	P50875	604 aa		4.06	□□□□□ -1.76
WHI3	YNL197C	YML131W	Q03102	365 aa		4.06	□□□□□ -1.76
WHI3	YNL197C	PSR2	Q07949	397 aa		4.06	□□□□□ -1.76
WHI3	YNL197C	ECM3	Q99252	613 aa		4.06	□□□□□ -1.76
WHI3	YNL197C	AIM3	P38266	947 aa	Known RBP	4.05	□□□□□ -1.76
WHI3	YNL197C	VID27	P40157	782 aa		4.05	□□□□□ -1.76
WHI3	YNL197C	BAP3	P41815	604 aa		4.05	□□□□□ -1.76
WHI3	YNL197C	MTL1	P53214	551 aa		4.05	□□□□□ -1.76
WHI3	YNL197C	PEF1	P53238	335 aa		4.05	□□□□□ -1.76
WHI3	YNL197C	NRG1	Q03125	231 aa		4.05	□□□□□ -1.76
WHI3	YNL197C	TRS130	Q03660	1102 aa		4.05	□□□□□ -1.76
WHI3	YNL197C	SAW1	P39735	261 aa		4.05	□□□□□ -1.76
WHI3	YNL197C	PRM2	P40534	656 aa		4.05	□□□□□ -1.76
WHI3	YNL197C	IRC24	P40580	263 aa		4.05	□□□□□ -1.76
WHI3	YNL197C	PXA1	P41909	870 aa		4.05	□□□□□ -1.76
WHI3	YNL197C	THI22	Q06490	572 aa		4.05	□□□□□ -1.76
WHI3	YNL197C	HIM1	Q06674	414 aa		4.05	□□□□□ -1.76
WHI3	YNL197C	DBP10	Q12389	995 aa	Known RBP	4.05	□□□□□ -1.76
WHI3	YNL197C	VPS5	Q92331	675 aa		4.05	□□□□□ -1.76
WHI3	YNL197C	VAS1	P07806	1104 aa	Known RBP	4.04	□□□□□ -1.76
WHI3	YNL197C	RMA1	P36001	430 aa	Known RBP	4.04	□□□□□ -1.76
WHI3	YNL197C	HOS4	P40480	1083 aa		4.04	□□□□□ -1.76
WHI3	YNL197C	GAD1	Q04792	585 aa		4.04	□□□□□ -1.76
WHI3	YNL197C	ENB1	Q08299	606 aa		4.04	□□□□□ -1.76
WHI3	YNL197C	SGO1	Q08490	590 aa		4.04	□□□□□ -1.76
WHI3	YNL197C	ERG20	P08524	352 aa	Known RBP	4.03	□□□□□ -1.76
WHI3	YNL197C	GFA1	P14742	717 aa	Known RBP	4.03	□□□□□ -1.76
WHI3	YNL197C	CBP3	P21560	335 aa		4.03	□□□□□ -1.76
WHI3	YNL197C	APT2	P36973	181 aa		4.03	□□□□□ -1.76
WHI3	YNL197C	APM3	P38153	483 aa		4.03	□□□□□ -1.76
WHI3	YNL197C	YBR053C	P38235	358 aa		4.03	□□□□□ -1.76
WHI3	YNL197C	YHR033W	P38690	423 aa		4.03	□□□□□ -1.76
WHI3	YNL197C	CRG1	P38892	291 aa	RIP-Chip data	4.03	□□□□□ -1.76	not detected
WHI3	YNL197C	STT3	P39007	718 aa	Known RBP	4.03	□□□□□ -1.76
WHI3	YNL197C	SSP120	P39931	234 aa	Known RBP	4.03	□□□□□ -1.76
WHI3	YNL197C	FKH2	P41813	862 aa		4.03	□□□□□ -1.76
WHI3	YNL197C	ARC35	P53731	342 aa	Known RBP	4.03	□□□□□ -1.76
WHI3	YNL197C	VBA4	Q04602	768 aa	Known RBP	4.03	□□□□□ -1.76
WHI3	YNL197C	SSP2	Q08646	371 aa		4.03	□□□□□ -1.76
WHI3	YNL197C	POM34	Q12445	299 aa		4.03	□□□□□ -1.76
WHI3	YNL197C	PHO81	P17442	1178 aa		4.03	□□□□□ -1.76
WHI3	YNL197C	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.03	□□□□□ -1.76	not detected
WHI3	YNL197C	ARG1	P22768	420 aa		4.03	□□□□□ -1.76
WHI3	YNL197C	PEX1	P24004	1043 aa		4.03	□□□□□ -1.76
WHI3	YNL197C	SDS22	P36047	338 aa		4.03	□□□□□ -1.76
WHI3	YNL197C	FMO1	P38866	432 aa		4.03	□□□□□ -1.76
WHI3	YNL197C	FTR1	P40088	404 aa		4.03	□□□□□ -1.76
WHI3	YNL197C	COX18	P53239	316 aa		4.03	□□□□□ -1.76
WHI3	YNL197C	TFC6	Q06339	672 aa		4.03	□□□□□ -1.76
WHI3	YNL197C	TRP4	P07285	380 aa	Predicted RBP	4.02	□□□□□ -1.77
WHI3	YNL197C	HMG2	P12684	1045 aa		4.02	□□□□□ -1.77
WHI3	YNL197C	LAT1	P12695	482 aa	Known RBP	4.02	□□□□□ -1.77
WHI3	YNL197C	NCP1	P16603	691 aa	Known RBP	4.02	□□□□□ -1.77
WHI3	YNL197C	PRP6	P19735	899 aa	Predicted RBP	4.02	□□□□□ -1.77
WHI3	YNL197C	GAS1	P22146	559 aa	Known RBP	4.02	□□□□□ -1.77
WHI3	YNL197C	CWH43	P25618	953 aa		4.02	□□□□□ -1.77
WHI3	YNL197C	THI80	P35202	319 aa		4.02	□□□□□ -1.77
WHI3	YNL197C	RIM8	P53179	542 aa		4.02	□□□□□ -1.77
WHI3	YNL197C	TMA10	Q06177	86 aa		4.02	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 58.1 ms