RNA–Protein interactions for RNA: YHR004C

NEM1, Transcript of Probable catalytic subunit of Nem1p-Spo7p phosphatase holoenzyme, yeast

Gene NEM1, Length 1,341 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NEM1	YHR004C	ERG6	P25087	383 aa	Known RBP	5.73	□□□□□ -1.49
NEM1	YHR004C	RTA1	P53047	317 aa		5.73	□□□□□ -1.49
NEM1	YHR004C	SPC98	P53540	846 aa		5.73	□□□□□ -1.49
NEM1	YHR004C	YLR149C	Q99296	730 aa		5.73	□□□□□ -1.49
NEM1	YHR004C	PGK1	P00560	416 aa	Known RBP	5.72	□□□□□ -1.49
NEM1	YHR004C	RNR1	P21524	888 aa	Known RBP	5.72	□□□□□ -1.49
NEM1	YHR004C	GET2	P40056	285 aa		5.71	□□□□□ -1.5
NEM1	YHR004C	HUL5	P53119	910 aa		5.71	□□□□□ -1.5
NEM1	YHR004C	FMP30	Q02883	468 aa		5.71	□□□□□ -1.5
NEM1	YHR004C	MTC2	P34246	357 aa		5.7	□□□□□ -1.5
NEM1	YHR004C	SET3	P36124	751 aa		5.7	□□□□□ -1.5
NEM1	YHR004C	YGR151C	P53287	111 aa		5.7	□□□□□ -1.5
NEM1	YHR004C	HMO1	Q03973	246 aa	Known RBP	5.7	□□□□□ -1.5
NEM1	YHR004C	ADE5,7	P07244	802 aa	Known RBP	5.69	□□□□□ -1.5
NEM1	YHR004C	PRP28	P23394	588 aa		5.69	□□□□□ -1.5
NEM1	YHR004C	SAT4	P25333	603 aa	Known RBP	5.69	□□□□□ -1.5
NEM1	YHR004C	XBP1	P40489	647 aa		5.69	□□□□□ -1.5
NEM1	YHR004C	BMS1	Q08965	1183 aa	Known RBP	5.69	□□□□□ -1.5
NEM1	YHR004C	UGP1	P32861	499 aa	Known RBP	5.68	□□□□□ -1.5
NEM1	YHR004C	PIG2	P40187	538 aa		5.68	□□□□□ -1.5
NEM1	YHR004C	SCS3	P53012	380 aa		5.68	□□□□□ -1.5
NEM1	YHR004C	RGT2	Q12300	763 aa		5.68	□□□□□ -1.5
NEM1	YHR004C	STO1	P34160	861 aa	Known RBP	5.67	□□□□□ -1.5
NEM1	YHR004C	MCD4	P36051	919 aa		5.67	□□□□□ -1.5
NEM1	YHR004C	COX18	P53239	316 aa		5.67	□□□□□ -1.5
NEM1	YHR004C	RGC1	Q06108	1083 aa	Known RBP	5.67	□□□□□ -1.5
NEM1	YHR004C	STE12	P13574	688 aa		5.66	□□□□□ -1.5
NEM1	YHR004C	NUP1	P20676	1076 aa		5.66	□□□□□ -1.5
NEM1	YHR004C	BIT2	P38346	545 aa		5.66	□□□□□ -1.5
NEM1	YHR004C	GID8	P40208	455 aa		5.66	□□□□□ -1.5
NEM1	YHR004C	NOP9	P47077	666 aa	Known RBP	5.66	□□□□□ -1.5
NEM1	YHR004C	Q0142	Q9ZZW4	58 aa		5.66	□□□□□ -1.5
NEM1	YHR004C	YMC2	P38087	329 aa		5.65	□□□□□ -1.51
NEM1	YHR004C	KSP1	P38691	1029 aa	Known RBP	5.65	□□□□□ -1.51
NEM1	YHR004C	RPN7	Q06103	429 aa	Known RBP	5.65	□□□□□ -1.51
NEM1	YHR004C	YDL086W	Q07505	273 aa		5.65	□□□□□ -1.51
NEM1	YHR004C	BCS1	P32839	456 aa		5.64	□□□□□ -1.51
NEM1	YHR004C	APL3	P38065	1025 aa		5.64	□□□□□ -1.51
NEM1	YHR004C	HSL7	P38274	827 aa		5.64	□□□□□ -1.51
NEM1	YHR004C	PMC1	P38929	1173 aa	Predicted RBP	5.64	□□□□□ -1.51
NEM1	YHR004C	GDH3	P39708	457 aa		5.64	□□□□□ -1.51
NEM1	YHR004C	MPS1	P54199	764 aa		5.64	□□□□□ -1.51
NEM1	YHR004C	SNP1	Q00916	300 aa	Predicted RBP	5.64	□□□□□ -1.51
NEM1	YHR004C	CAF16	P43569	289 aa		5.63	□□□□□ -1.51
NEM1	YHR004C	RSC8	P43609	557 aa	Known RBP	5.63	□□□□□ -1.51
NEM1	YHR004C	THI22	Q06490	572 aa		5.63	□□□□□ -1.51
NEM1	YHR004C	CHS5	Q12114	671 aa	Known RBP	5.63	□□□□□ -1.51
NEM1	YHR004C	APN1	P22936	367 aa		5.62	□□□□□ -1.51
NEM1	YHR004C	YUR1	P26725	428 aa		5.62	□□□□□ -1.51
NEM1	YHR004C	YKR018C	P36114	725 aa		5.62	□□□□□ -1.51
NEM1	YHR004C	PCL10	P53124	433 aa		5.62	□□□□□ -1.51
NEM1	YHR004C	YKR051W	P36142	418 aa		5.61	□□□□□ -1.51
NEM1	YHR004C	CHZ1	P40019	153 aa	Predicted RBP	5.61	□□□□□ -1.51
NEM1	YHR004C	ULA1	Q12059	462 aa		5.61	□□□□□ -1.51
NEM1	YHR004C	MDM20	Q12387	796 aa	Known RBP	5.61	□□□□□ -1.51
NEM1	YHR004C	ECM3	Q99252	613 aa		5.61	□□□□□ -1.51
NEM1	YHR004C	PHO5	P00635	467 aa		5.6	□□□□□ -1.51
NEM1	YHR004C	CIT2	P08679	460 aa		5.6	□□□□□ -1.51
NEM1	YHR004C	YMC1	P32331	307 aa		5.6	□□□□□ -1.51
NEM1	YHR004C	CTP1	P38152	299 aa		5.6	□□□□□ -1.51
NEM1	YHR004C	NHX1	Q04121	633 aa		5.6	□□□□□ -1.51
NEM1	YHR004C	RAD18	P10862	487 aa		5.59	□□□□□ -1.51
NEM1	YHR004C	GSY1	P23337	708 aa		5.59	□□□□□ -1.51
NEM1	YHR004C	NTH1	P32356	751 aa		5.59	□□□□□ -1.51
NEM1	YHR004C	ASN1	P49089	572 aa	Known RBP	5.59	□□□□□ -1.51
NEM1	YHR004C	CDC53	Q12018	815 aa	Known RBP	5.59	□□□□□ -1.51
NEM1	YHR004C	LAM4	P38800	1345 aa		5.58	□□□□□ -1.52
NEM1	YHR004C	STI1	P15705	589 aa	Known RBP RIP-Chip data	5.58	□□□□□ -1.52	not detected
NEM1	YHR004C	APN2	P38207	520 aa		5.58	□□□□□ -1.52
NEM1	YHR004C	YHR097C	P38809	366 aa	Known RBP	5.58	□□□□□ -1.52
NEM1	YHR004C	MIT1	P40002	666 aa		5.58	□□□□□ -1.52
NEM1	YHR004C	TAX4	P47030	604 aa		5.58	□□□□□ -1.52
NEM1	YHR004C	MPS3	P47069	682 aa		5.58	□□□□□ -1.52
NEM1	YHR004C	NMA2	P53204	395 aa		5.58	□□□□□ -1.52
NEM1	YHR004C	YSH1	Q06224	779 aa	Predicted RBP	5.58	□□□□□ -1.52
NEM1	YHR004C	AIM44	Q99299	758 aa		5.58	□□□□□ -1.52
NEM1	YHR004C	SEC6	P32844	805 aa		5.57	□□□□□ -1.52
NEM1	YHR004C	PMT6	P42934	759 aa		5.57	□□□□□ -1.52
NEM1	YHR004C	STB2	P46679	850 aa		5.57	□□□□□ -1.52
NEM1	YHR004C	ATG36	P46983	293 aa		5.57	□□□□□ -1.52
NEM1	YHR004C	SET2	P46995	733 aa	Known RBP	5.57	□□□□□ -1.52
NEM1	YHR004C	NOP7	P53261	605 aa	Known RBP	5.57	□□□□□ -1.52
NEM1	YHR004C	KHA1	P40309	873 aa		5.56	□□□□□ -1.52
NEM1	YHR004C	CCT5	P40413	562 aa	Known RBP	5.56	□□□□□ -1.52
NEM1	YHR004C	NGL2	Q03264	515 aa	Known RBP	5.56	□□□□□ -1.52
NEM1	YHR004C	HFD1	Q04458	532 aa		5.56	□□□□□ -1.52
NEM1	YHR004C	CDC9	P04819	755 aa		5.55	□□□□□ -1.52
NEM1	YHR004C	TPK2	P06245	380 aa		5.55	□□□□□ -1.52
NEM1	YHR004C	SEC15	P22224	910 aa		5.55	□□□□□ -1.52
NEM1	YHR004C	VBA3	P25594	458 aa		5.55	□□□□□ -1.52
NEM1	YHR004C	FEN2	P25621	512 aa	Known RBP	5.55	□□□□□ -1.52
NEM1	YHR004C	YOR131C	Q12486	218 aa		5.55	□□□□□ -1.52
NEM1	YHR004C	MDM12	Q92328	271 aa		5.55	□□□□□ -1.52
NEM1	YHR004C	HOG1	P32485	435 aa		5.54	□□□□□ -1.52
NEM1	YHR004C	YNL195C	P40168	261 aa		5.54	□□□□□ -1.52
NEM1	YHR004C	ULP2	P40537	1034 aa	Predicted RBP	5.54	□□□□□ -1.52
NEM1	YHR004C	BPL1	P48445	690 aa	Predicted RBP	5.54	□□□□□ -1.52
NEM1	YHR004C	ORM2	Q06144	216 aa		5.54	□□□□□ -1.52
NEM1	YHR004C	RKI1	Q12189	258 aa		5.54	□□□□□ -1.52
NEM1	YHR004C	DOT6	P40059	670 aa	Known RBP	5.53	□□□□□ -1.52

Retrieved 100 of 5,963 RNA–protein pairs in 64.2 ms