RNA–Protein interactions for RNA: YDL074C

BRE1, Transcript of E3 ubiquitin ligase, yeast

Gene BRE1, Length 2,103 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BRE1	YDL074C	KRS1	P15180	591 aa	Known RBP	2.23	□□□□□ -2.05
BRE1	YDL074C	ILV6	P25605	309 aa	Known RBP	2.23	□□□□□ -2.05
BRE1	YDL074C	EFT1	P32324	842 aa	Known RBP	2.23	□□□□□ -2.05
BRE1	YDL074C	PLC1	P32383	869 aa		2.23	□□□□□ -2.05
BRE1	YDL074C	UTR4	P32626	227 aa		2.23	□□□□□ -2.05
BRE1	YDL074C	MRE11	P32829	692 aa		2.23	□□□□□ -2.05
BRE1	YDL074C	TRM2	P33753	639 aa		2.23	□□□□□ -2.05
BRE1	YDL074C	YBL055C	P34220	418 aa	Predicted RBP	2.23	□□□□□ -2.05
BRE1	YDL074C	CSG2	P35206	410 aa		2.23	□□□□□ -2.05
BRE1	YDL074C	KDX1	P36005	433 aa		2.23	□□□□□ -2.05
BRE1	YDL074C	GPT2	P36148	743 aa		2.23	□□□□□ -2.05
BRE1	YDL074C	PGM2	P37012	569 aa	Known RBP	2.23	□□□□□ -2.05
BRE1	YDL074C	NOP4	P37838	685 aa	Known RBP	2.23	□□□□□ -2.05
BRE1	YDL074C	REG2	P38232	338 aa		2.23	□□□□□ -2.05
BRE1	YDL074C	ECM2	P38241	364 aa	Known RBP	2.23	□□□□□ -2.05
BRE1	YDL074C	MMS4	P38257	691 aa		2.23	□□□□□ -2.05
BRE1	YDL074C	YSW1	P38280	609 aa		2.23	□□□□□ -2.05
BRE1	YDL074C	RRT2	P38332	387 aa		2.23	□□□□□ -2.05
BRE1	YDL074C	POP4	P38336	279 aa		2.23	□□□□□ -2.05
BRE1	YDL074C	VHR2	P40041	505 aa		2.23	□□□□□ -2.05
BRE1	YDL074C	LCP5	P40079	357 aa	Predicted RBP	2.23	□□□□□ -2.05
BRE1	YDL074C	RGD2	P43556	714 aa		2.23	□□□□□ -2.05
BRE1	YDL074C	DAS1	P47005	663 aa		2.23	□□□□□ -2.05
BRE1	YDL074C	YJL007C	P47080	104 aa		2.23	□□□□□ -2.05
BRE1	YDL074C	YJR079W	P47126	109 aa		2.23	□□□□□ -2.05
BRE1	YDL074C	HSH155	P49955	971 aa	Known RBP	2.23	□□□□□ -2.05
BRE1	YDL074C	PSP2	P50109	593 aa	Known RBP	2.23	□□□□□ -2.05
BRE1	YDL074C	INP52	P50942	1183 aa		2.23	□□□□□ -2.05
BRE1	YDL074C	PCL10	P53124	433 aa		2.23	□□□□□ -2.05
BRE1	YDL074C	TAM41	P53230	385 aa		2.23	□□□□□ -2.05
BRE1	YDL074C	DRN1	P53255	507 aa	Known RBP	2.23	□□□□□ -2.05
BRE1	YDL074C	CPR6	P53691	371 aa	Known RBP	2.23	□□□□□ -2.05
BRE1	YDL074C	UTP14	Q04500	899 aa	Known RBP	2.23	□□□□□ -2.05
BRE1	YDL074C	IVY1	Q04934	453 aa		2.23	□□□□□ -2.05
BRE1	YDL074C	FRA1	Q07825	749 aa		2.23	□□□□□ -2.05
BRE1	YDL074C	YLR001C	Q07895	862 aa		2.23	□□□□□ -2.05
BRE1	YDL074C	SDH5	Q08230	162 aa		2.23	□□□□□ -2.05
BRE1	YDL074C	FBP1	P09201	348 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	ERG11	P10614	530 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	KAR3	P17119	729 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	GAP1	P19145	602 aa	Predicted RBP	2.22	□□□□□ -2.05
BRE1	YDL074C	VMA4	P22203	233 aa	Known RBP	2.22	□□□□□ -2.05
BRE1	YDL074C	PAP1	P29468	568 aa	Known RBP	2.22	□□□□□ -2.05
BRE1	YDL074C	RGT1	P32862	1170 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	YMC2	P38087	329 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	EXO5	P38289	585 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	RGD1	P38339	666 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	PCA1	P38360	1216 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	PCM1	P38628	557 aa	Known RBP	2.22	□□□□□ -2.05
BRE1	YDL074C	DYS1	P38791	387 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	NDT80	P38830	627 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	MXR1	P40029	184 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	ULP2	P40537	1034 aa	Predicted RBP	2.22	□□□□□ -2.05
BRE1	YDL074C	YIR007W	P40566	764 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	YML6	P51998	286 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	RTA1	P53047	317 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	NOP13	P53883	403 aa	Known RBP RIP-Chip data	2.22	□□□□□ -2.05	not detected
BRE1	YDL074C	KTR5	P53966	522 aa	Predicted RBP	2.22	□□□□□ -2.05
BRE1	YDL074C	ARK1	P53974	638 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	TBF1	Q02457	562 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	COQ9	Q05779	260 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	DUS3	Q06053	668 aa	Known RBP	2.22	□□□□□ -2.05
BRE1	YDL074C	OPT2	Q06593	877 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	GPI13	Q07830	1017 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	SIL1	Q08199	421 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	IES4	Q08561	116 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	MET7	Q08645	548 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	MSC6	Q08818	692 aa	Known RBP	2.22	□□□□□ -2.05
BRE1	YDL074C	ERP3	Q12403	225 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	TRM11	Q12463	433 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	PCD1	Q12524	340 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	MOT1	P32333	1867 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	ECM29	P38737	1868 aa		2.22	□□□□□ -2.05
BRE1	YDL074C	DED1	P06634	604 aa	Known RBP	2.21	□□□□□ -2.06
BRE1	YDL074C	TIF1	P10081	395 aa	Known RBP	2.21	□□□□□ -2.06
BRE1	YDL074C	PEP5	P12868	1029 aa		2.21	□□□□□ -2.06
BRE1	YDL074C	POL3	P15436	1097 aa		2.21	□□□□□ -2.06
BRE1	YDL074C	SFL1	P20134	766 aa		2.21	□□□□□ -2.06
BRE1	YDL074C	KAR4	P25583	335 aa		2.21	□□□□□ -2.06
BRE1	YDL074C	YCR051W	P25631	222 aa		2.21	□□□□□ -2.06
BRE1	YDL074C	IRE1	P32361	1115 aa		2.21	□□□□□ -2.06
BRE1	YDL074C	CDC11	P32458	415 aa		2.21	□□□□□ -2.06
BRE1	YDL074C	ECM32	P32644	1121 aa	Known RBP	2.21	□□□□□ -2.06
BRE1	YDL074C	YEL1	P34225	687 aa		2.21	□□□□□ -2.06
BRE1	YDL074C	SEG2	P34250	1132 aa		2.21	□□□□□ -2.06
BRE1	YDL074C	OAF3	P36023	863 aa		2.21	□□□□□ -2.06
BRE1	YDL074C	MRX3	P38172	270 aa		2.21	□□□□□ -2.06
BRE1	YDL074C	GDT1	P38301	280 aa	Predicted RBP	2.21	□□□□□ -2.06
BRE1	YDL074C	VHC1	P38329	1120 aa		2.21	□□□□□ -2.06
BRE1	YDL074C	END3	P39013	349 aa		2.21	□□□□□ -2.06
BRE1	YDL074C	CCT2	P39076	527 aa	Known RBP	2.21	□□□□□ -2.06
BRE1	YDL074C	YMR134W	P40207	237 aa		2.21	□□□□□ -2.06
BRE1	YDL074C	SPR3	P41901	512 aa		2.21	□□□□□ -2.06
BRE1	YDL074C	SBE2	P42223	864 aa	Known RBP	2.21	□□□□□ -2.06
BRE1	YDL074C	CPR7	P47103	393 aa		2.21	□□□□□ -2.06
BRE1	YDL074C	ASN1	P49089	572 aa	Known RBP	2.21	□□□□□ -2.06
BRE1	YDL074C	TAD1	P53065	400 aa		2.21	□□□□□ -2.06
BRE1	YDL074C	YGL140C	P53120	1219 aa		2.21	□□□□□ -2.06
BRE1	YDL074C	YGR130C	P53278	816 aa		2.21	□□□□□ -2.06
BRE1	YDL074C	YNL146W	P53906	100 aa		2.21	□□□□□ -2.06

Retrieved 100 of 5,963 RNA–protein pairs in 79.3 ms