RNA–Protein interactions for RNA: YPR110C

RPC40, Transcript of RNA polymerase subunit AC40, yeastyeast

Gene RPC40, Length 1,008 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPC40YPR110C SWM1Q12379 170 aa3.88□□□□□ -1.79
RPC40YPR110C NPC2Q12408 173 aa3.88□□□□□ -1.79
RPC40YPR110C KCS1Q12494 1050 aa3.88□□□□□ -1.79
RPC40YPR110C YLR415CO13578 112 aa3.87□□□□□ -1.79
RPC40YPR110C PRE10P21242 288 aaKnown RBP RIP-Chip data3.87□□□□□ -1.79not detected
RPC40YPR110C RNQ1P25367 405 aa3.87□□□□□ -1.79
RPC40YPR110C AIM3P38266 947 aaKnown RBP3.87□□□□□ -1.79
RPC40YPR110C BEM4P39011 633 aa3.87□□□□□ -1.79
RPC40YPR110C GID8P40208 455 aa3.87□□□□□ -1.79
RPC40YPR110C PFA3P42836 336 aa3.87□□□□□ -1.79
RPC40YPR110C ATG36P46983 293 aa3.87□□□□□ -1.79
RPC40YPR110C MTR3P48240 250 aaPredicted RBP3.87□□□□□ -1.79
RPC40YPR110C EXG2P52911 562 aa3.87□□□□□ -1.79
RPC40YPR110C ASM4Q05166 528 aa3.87□□□□□ -1.79
RPC40YPR110C AEP2P22136 580 aa3.86□□□□□ -1.79
RPC40YPR110C GAS1P22146 559 aaKnown RBP3.86□□□□□ -1.79
RPC40YPR110C STE11P23561 717 aa3.86□□□□□ -1.79
RPC40YPR110C NGG1P32494 702 aa3.86□□□□□ -1.79
RPC40YPR110C GRX7P38068 203 aa3.86□□□□□ -1.79
RPC40YPR110C AKL1P38080 1108 aaKnown RBP3.86□□□□□ -1.79
RPC40YPR110C SIC1P38634 284 aa3.86□□□□□ -1.79
RPC40YPR110C MSS4P38994 779 aa3.86□□□□□ -1.79
RPC40YPR110C ECM1P39715 212 aa3.86□□□□□ -1.79
RPC40YPR110C VHR1P40522 640 aa3.86□□□□□ -1.79
RPC40YPR110C PRP43P53131 767 aaKnown RBP3.86□□□□□ -1.79
RPC40YPR110C BRE5P53741 515 aaKnown RBP3.86□□□□□ -1.79
RPC40YPR110C ORC4P54791 529 aa3.86□□□□□ -1.79
RPC40YPR110C ENB1Q08299 606 aa3.86□□□□□ -1.79
RPC40YPR110C TRM11Q12463 433 aa3.86□□□□□ -1.79
RPC40YPR110C TMA7Q3E764 64 aaKnown RBP3.86□□□□□ -1.79
RPC40YPR110C SWI6P09959 803 aa3.85□□□□□ -1.79
RPC40YPR110C KAR4P25583 335 aa3.85□□□□□ -1.79
RPC40YPR110C PLC1P32383 869 aa3.85□□□□□ -1.79
RPC40YPR110C ELM1P32801 640 aa3.85□□□□□ -1.79
RPC40YPR110C LST4P34239 828 aa3.85□□□□□ -1.79
RPC40YPR110C THI80P35202 319 aa3.85□□□□□ -1.79
RPC40YPR110C CTF13P35203 478 aa3.85□□□□□ -1.79
RPC40YPR110C OAF3P36023 863 aa3.85□□□□□ -1.79
RPC40YPR110C YBR259WP38338 688 aa3.85□□□□□ -1.79
RPC40YPR110C YJR008WP47085 338 aa3.85□□□□□ -1.79
RPC40YPR110C ERG5P54781 538 aa3.85□□□□□ -1.79
RPC40YPR110C GPD1Q00055 391 aaKnown RBP3.85□□□□□ -1.79
RPC40YPR110C PKH1Q03407 766 aa3.85□□□□□ -1.79
RPC40YPR110C SKY1Q03656 742 aa3.85□□□□□ -1.79
RPC40YPR110C PEX19Q07418 342 aa3.85□□□□□ -1.79
RPC40YPR110C RMP1Q12530 201 aa3.85□□□□□ -1.79
RPC40YPR110C RPS21BQ3E754 87 aaKnown RBP3.85□□□□□ -1.79
RPC40YPR110C RPS21AP0C0V8 87 aaKnown RBP3.84□□□□□ -1.79
RPC40YPR110C HEM12P32347 362 aaPredicted RBP3.84□□□□□ -1.79
RPC40YPR110C SET2P46995 733 aaKnown RBP3.84□□□□□ -1.79
RPC40YPR110C PEX14P53112 341 aa3.84□□□□□ -1.79
RPC40YPR110C TGL2P54857 326 aa3.84□□□□□ -1.79
RPC40YPR110C ARG5,6Q01217 863 aa3.84□□□□□ -1.79
RPC40YPR110C PTA1Q01329 785 aaPredicted RBP3.84□□□□□ -1.79
RPC40YPR110C LEE1Q02799 301 aaKnown RBP3.84□□□□□ -1.79
RPC40YPR110C YLR358CO13565 187 aa3.83□□□□□ -1.8
RPC40YPR110C ADE2P21264 571 aaKnown RBP3.83□□□□□ -1.8
RPC40YPR110C DAL3P32459 195 aa3.83□□□□□ -1.8
RPC40YPR110C DCG1P32460 244 aa3.83□□□□□ -1.8
RPC40YPR110C TOD6P34219 525 aa3.83□□□□□ -1.8
RPC40YPR110C APL2P36000 726 aaPredicted RBP3.83□□□□□ -1.8
RPC40YPR110C APN2P38207 520 aa3.83□□□□□ -1.8
RPC40YPR110C BIT2P38346 545 aa3.83□□□□□ -1.8
RPC40YPR110C NUG1P40010 520 aaKnown RBP3.83□□□□□ -1.8
RPC40YPR110C EMP65P40085 556 aa3.83□□□□□ -1.8
RPC40YPR110C BFA1P47113 574 aa3.83□□□□□ -1.8
RPC40YPR110C PRP31P49704 494 aaPredicted RBP3.83□□□□□ -1.8
RPC40YPR110C YBP2P53169 641 aa3.83□□□□□ -1.8
RPC40YPR110C HMO1Q03973 246 aaKnown RBP3.83□□□□□ -1.8
RPC40YPR110C YHM2Q04013 314 aa3.83□□□□□ -1.8
RPC40YPR110C MCM21Q06675 368 aa3.83□□□□□ -1.8
RPC40YPR110C LAS17Q12446 633 aa3.83□□□□□ -1.8
RPC40YPR110C ATP4P05626 244 aa3.82□□□□□ -1.8
RPC40YPR110C SEC65P29478 273 aa3.82□□□□□ -1.8
RPC40YPR110C YPT7P32939 208 aa3.82□□□□□ -1.8
RPC40YPR110C FAT1P38225 669 aa3.82□□□□□ -1.8
RPC40YPR110C RPP1P38786 293 aa3.82□□□□□ -1.8
RPC40YPR110C YHR202WP38887 602 aa3.82□□□□□ -1.8
RPC40YPR110C TPM2P40414 161 aa3.82□□□□□ -1.8
RPC40YPR110C MNN10P50108 393 aaKnown RBP3.82□□□□□ -1.8
RPC40YPR110C RTS3P53289 263 aa3.82□□□□□ -1.8
RPC40YPR110C REC102Q02721 264 aa3.82□□□□□ -1.8
RPC40YPR110C NRG1Q03125 231 aa3.82□□□□□ -1.8
RPC40YPR110C YOL057WQ08225 711 aa3.82□□□□□ -1.8
RPC40YPR110C SLX4Q12098 748 aa3.82□□□□□ -1.8
RPC40YPR110C TFC4P33339 1025 aa3.81□□□□□ -1.8
RPC40YPR110C YKR075CP36155 307 aa3.81□□□□□ -1.8
RPC40YPR110C PEA2P40091 420 aa3.81□□□□□ -1.8
RPC40YPR110C SLD3P53135 668 aa3.81□□□□□ -1.8
RPC40YPR110C TEX1P53851 422 aaKnown RBP3.81□□□□□ -1.8
RPC40YPR110C YNL034WP53963 612 aa3.81□□□□□ -1.8
RPC40YPR110C YNL018CP53976 612 aa3.81□□□□□ -1.8
RPC40YPR110C SND1Q04007 877 aa3.81□□□□□ -1.8
RPC40YPR110C YLR407WQ06070 228 aa3.81□□□□□ -1.8
RPC40YPR110C YOR378WQ08902 515 aa3.81□□□□□ -1.8
RPC40YPR110C NOP56Q12460 504 aaKnown RBP RIP-Chip data3.81□□□□□ -1.8not detected
RPC40YPR110C ATG11Q12527 1178 aa3.81□□□□□ -1.8
RPC40YPR110C TRP4P07285 380 aaPredicted RBP3.8□□□□□ -1.8
RPC40YPR110C COX11P19516 300 aaKnown RBP3.8□□□□□ -1.8
RPC40YPR110C YKU70P32807 602 aa3.8□□□□□ -1.8
Retrieved 100 of 5,963 RNA–protein pairs in 33.1 ms