RNA–Protein interactions for RNA: YBL058W

SHP1, Transcript of UBX (ubiquitin regulatory X) domain-containing protein, yeastyeast

Gene SHP1, Length 1,272 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHP1YBL058W UBP5P39944 805 aa6.41□□□□□ -1.38
SHP1YBL058W THI6P41835 540 aa6.41□□□□□ -1.38
SHP1YBL058W SCD6P45978 349 aaKnown RBP RIP-Chip data6.41□□□□□ -1.38not detected
SHP1YBL058W TAF1P46677 1066 aa6.41□□□□□ -1.38
SHP1YBL058W ASN1P49089 572 aaKnown RBP6.41□□□□□ -1.38
SHP1YBL058W PIL1P53252 339 aaKnown RBP6.41□□□□□ -1.38
SHP1YBL058W YHM2Q04013 314 aa6.41□□□□□ -1.38
SHP1YBL058W CDD1Q06549 142 aa6.41□□□□□ -1.38
SHP1YBL058W PEX19Q07418 342 aa6.41□□□□□ -1.38
SHP1YBL058W ELG1Q12050 791 aa6.41□□□□□ -1.38
SHP1YBL058W CTF3Q12748 733 aa6.41□□□□□ -1.38
SHP1YBL058W MEX67Q99257 599 aaKnown RBP6.41□□□□□ -1.38
SHP1YBL058W FOB1O13329 566 aa6.4□□□□□ -1.38
SHP1YBL058W CPA2P03965 1118 aaKnown RBP6.4□□□□□ -1.38
SHP1YBL058W URA1P28272 314 aaPredicted RBP6.4□□□□□ -1.38
SHP1YBL058W PPS1P38148 807 aa6.4□□□□□ -1.38
SHP1YBL058W UBP13P38187 747 aa6.4□□□□□ -1.38
SHP1YBL058W DAK2P43550 591 aa6.4□□□□□ -1.38
SHP1YBL058W POL31P46957 487 aa6.4□□□□□ -1.38
SHP1YBL058W FAA4P47912 694 aaKnown RBP6.4□□□□□ -1.38
SHP1YBL058W CUE3P53137 624 aaKnown RBP6.4□□□□□ -1.38
SHP1YBL058W NMA111P53920 997 aa6.4□□□□□ -1.38
SHP1YBL058W TBF1Q02457 562 aa6.4□□□□□ -1.38
SHP1YBL058W RPL19AP0CX82 189 aaKnown RBP6.39□□□□□ -1.39
SHP1YBL058W RPL19BP0CX83 189 aaPredicted RBP6.39□□□□□ -1.39
SHP1YBL058W PCK1P10963 549 aa6.39□□□□□ -1.39
SHP1YBL058W SSB1P11484 613 aaKnown RBP6.39□□□□□ -1.39
SHP1YBL058W FUS1P11710 512 aa6.39□□□□□ -1.39
SHP1YBL058W VPS3P23643 1011 aa6.39□□□□□ -1.39
SHP1YBL058W YJU3P28321 313 aa6.39□□□□□ -1.39
SHP1YBL058W DUG2P38149 878 aa6.39□□□□□ -1.39
SHP1YBL058W SIF2P38262 535 aa6.39□□□□□ -1.39
SHP1YBL058W SSB2P40150 613 aaKnown RBP6.39□□□□□ -1.39
SHP1YBL058W LSB3P43603 459 aaKnown RBP6.39□□□□□ -1.39
SHP1YBL058W RSM26P47141 266 aa6.39□□□□□ -1.39
SHP1YBL058W VPS25P47142 202 aa6.39□□□□□ -1.39
SHP1YBL058W PSP1P50896 841 aaKnown RBP6.39□□□□□ -1.39
SHP1YBL058W TUB4P53378 473 aa6.39□□□□□ -1.39
SHP1YBL058W UTP14Q04500 899 aaKnown RBP6.39□□□□□ -1.39
SHP1YBL058W YML053CQ04978 212 aa6.39□□□□□ -1.39
SHP1YBL058W LEA1Q08963 238 aaPredicted RBP6.39□□□□□ -1.39
SHP1YBL058W CDC53Q12018 815 aaKnown RBP6.39□□□□□ -1.39
SHP1YBL058W ISU2Q12056 156 aa6.39□□□□□ -1.39
SHP1YBL058W SGT2Q12118 346 aaKnown RBP6.39□□□□□ -1.39
SHP1YBL058W PDH1Q12428 516 aaKnown RBP6.39□□□□□ -1.39
SHP1YBL058W MPD2Q99316 277 aa6.39□□□□□ -1.39
SHP1YBL058W ASP3-2P0CX77 362 aa6.38□□□□□ -1.39
SHP1YBL058W ASP3-3P0CX78 362 aa6.38□□□□□ -1.39
SHP1YBL058W ASP3-4P0CX79 362 aa6.38□□□□□ -1.39
SHP1YBL058W ASP3-1P0CZ17 362 aa6.38□□□□□ -1.39
SHP1YBL058W SIR1P21691 654 aa6.38□□□□□ -1.39
SHP1YBL058W DAL7P21826 554 aa6.38□□□□□ -1.39
SHP1YBL058W MCM3P24279 971 aaKnown RBP6.38□□□□□ -1.39
SHP1YBL058W ECM32P32644 1121 aaKnown RBP6.38□□□□□ -1.39
SHP1YBL058W KTR4P38131 464 aa6.38□□□□□ -1.39
SHP1YBL058W NEM1P38757 446 aa6.38□□□□□ -1.39
SHP1YBL058W YHR054CP38780 354 aa6.38□□□□□ -1.39
SHP1YBL058W MED6P38782 295 aa6.38□□□□□ -1.39
SHP1YBL058W GYP8P43570 497 aa6.38□□□□□ -1.39
SHP1YBL058W VTC2P43585 828 aa6.38□□□□□ -1.39
SHP1YBL058W NOP13P53883 403 aaKnown RBP RIP-Chip data6.38□□□□□ -1.39not detected
SHP1YBL058W TIF35Q04067 274 aaKnown RBP6.38□□□□□ -1.39
SHP1YBL058W YPR084WQ06821 456 aa6.38□□□□□ -1.39
SHP1YBL058W YPL277CQ08989 487 aa6.38□□□□□ -1.39
SHP1YBL058W YPL150WQ12152 901 aa6.38□□□□□ -1.39
SHP1YBL058W HRT3Q12347 344 aa6.38□□□□□ -1.39
SHP1YBL058W HIS4P00815 799 aaKnown RBP6.37□□□□□ -1.39
SHP1YBL058W PGI1P12709 554 aaKnown RBP6.37□□□□□ -1.39
SHP1YBL058W RGP1P16664 663 aa6.37□□□□□ -1.39
SHP1YBL058W NUD1P32336 851 aa6.37□□□□□ -1.39
SHP1YBL058W ISF1P32488 338 aa6.37□□□□□ -1.39
SHP1YBL058W SLA2P33338 968 aa6.37□□□□□ -1.39
SHP1YBL058W YBR056WP38081 501 aa6.37□□□□□ -1.39
SHP1YBL058W POL12P38121 705 aaPredicted RBP6.37□□□□□ -1.39
SHP1YBL058W SFB3P38810 929 aa6.37□□□□□ -1.39
SHP1YBL058W NMD3P38861 518 aaKnown RBP6.37□□□□□ -1.39
SHP1YBL058W HSH155P49955 971 aaKnown RBP6.37□□□□□ -1.39
SHP1YBL058W YNR061CP53747 219 aa6.37□□□□□ -1.39
SHP1YBL058W YNL108CP53929 270 aa6.37□□□□□ -1.39
SHP1YBL058W HER2Q03557 464 aa6.37□□□□□ -1.39
SHP1YBL058W COG8Q04632 607 aa6.37□□□□□ -1.39
SHP1YBL058W MSB2P32334 1306 aa6.36□□□□□ -1.39
SHP1YBL058W TPK1P06244 397 aa6.36□□□□□ -1.39
SHP1YBL058W CUP1-1P0CX80 61 aa6.36□□□□□ -1.39
SHP1YBL058W CUP1-2P0CX81 61 aa6.36□□□□□ -1.39
SHP1YBL058W MTF1P14908 341 aaKnown RBP6.36□□□□□ -1.39
SHP1YBL058W MET4P32389 672 aa6.36□□□□□ -1.39
SHP1YBL058W TSA1P34760 196 aaKnown RBP6.36□□□□□ -1.39
SHP1YBL058W TTI1P36097 1038 aa6.36□□□□□ -1.39
SHP1YBL058W AGP2P38090 596 aa6.36□□□□□ -1.39
SHP1YBL058W TBS1P38114 1094 aa6.36□□□□□ -1.39
SHP1YBL058W MAL33P38157 468 aa6.36□□□□□ -1.39
SHP1YBL058W BTT1P40314 149 aaPredicted RBP6.36□□□□□ -1.39
SHP1YBL058W NBP1P52919 319 aaPredicted RBP6.36□□□□□ -1.39
SHP1YBL058W TMN2Q04562 672 aa6.36□□□□□ -1.39
SHP1YBL058W PSR2Q07949 397 aa6.36□□□□□ -1.39
SHP1YBL058W CET1O13297 549 aaPredicted RBP6.35□□□□□ -1.39
SHP1YBL058W PHO8P11491 566 aa6.35□□□□□ -1.39
SHP1YBL058W STE11P23561 717 aa6.35□□□□□ -1.39
SHP1YBL058W KIP1P28742 1111 aa6.35□□□□□ -1.39
Retrieved 100 of 5,963 RNA–protein pairs in 120.9 ms