RNA–Protein interactions for RNA: snR50

snR50, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR50, Length 90 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR50	snR50	CDC48	P25694	835 aa	Known RBP	0.63	□□□□□ -2.31
snR50	snR50	CCR4	P31384	837 aa	Known RBP	0.63	□□□□□ -2.31
snR50	snR50	MET4	P32389	672 aa		0.63	□□□□□ -2.31
snR50	snR50	LYP1	P32487	611 aa		0.63	□□□□□ -2.31
snR50	snR50	UGP1	P32861	499 aa	Known RBP	0.63	□□□□□ -2.31
snR50	snR50	ARC40	P38328	384 aa	Known RBP	0.63	□□□□□ -2.31
snR50	snR50	SAH1	P39954	449 aa	Known RBP	0.63	□□□□□ -2.31
snR50	snR50	AAT1	Q01802	451 aa		0.63	□□□□□ -2.31
snR50	snR50	PKH1	Q03407	766 aa		0.63	□□□□□ -2.31
snR50	snR50	HFD1	Q04458	532 aa		0.63	□□□□□ -2.31
snR50	snR50	SMA2	Q04658	369 aa		0.63	□□□□□ -2.31
snR50	snR50	ORM2	Q06144	216 aa		0.63	□□□□□ -2.31
snR50	snR50	IRC3	Q06683	689 aa		0.63	□□□□□ -2.31
snR50	snR50	SUB2	Q07478	446 aa	Known RBP	0.63	□□□□□ -2.31
snR50	snR50	RTT10	Q08924	1013 aa		0.63	□□□□□ -2.31
snR50	snR50	YBL113C	Q7M4S9	792 aa		0.63	□□□□□ -2.31
snR50	snR50	YKL033W-A	Q86ZR7	236 aa		0.63	□□□□□ -2.31
snR50	snR50	RAD2	P07276	1031 aa		0.62	□□□□□ -2.31
snR50	snR50	RPA135	P22138	1203 aa	Known RBP	0.62	□□□□□ -2.31
snR50	snR50	TSR4	P25040	408 aa		0.62	□□□□□ -2.31
snR50	snR50	TYE7	P33122	291 aa	Predicted RBP	0.62	□□□□□ -2.31
snR50	snR50	YKL107W	P34251	309 aa		0.62	□□□□□ -2.31
snR50	snR50	HOT13	P36078	116 aa		0.62	□□□□□ -2.31
snR50	snR50	GMH1	P36125	273 aa		0.62	□□□□□ -2.31
snR50	snR50	SIC1	P38634	284 aa		0.62	□□□□□ -2.31
snR50	snR50	CCT3	P39077	534 aa	Known RBP	0.62	□□□□□ -2.31
snR50	snR50	ECM1	P39715	212 aa		0.62	□□□□□ -2.31
snR50	snR50	YIL108W	P40483	696 aa	Known RBP	0.62	□□□□□ -2.31
snR50	snR50	VHR1	P40522	640 aa		0.62	□□□□□ -2.31
snR50	snR50	MNT3	P40549	630 aa		0.62	□□□□□ -2.31
snR50	snR50	TAX4	P47030	604 aa		0.62	□□□□□ -2.31
snR50	snR50	FHN1	P53279	174 aa		0.62	□□□□□ -2.31
snR50	snR50	RPL34A	P87262	121 aa	Predicted RBP	0.62	□□□□□ -2.31
snR50	snR50	YKR011C	Q02209	353 aa		0.62	□□□□□ -2.31
snR50	snR50	FMP30	Q02883	468 aa		0.62	□□□□□ -2.31
snR50	snR50	YPR196W	Q06595	470 aa		0.62	□□□□□ -2.31
snR50	snR50	YPL066W	Q12194	479 aa		0.62	□□□□□ -2.31
snR50	snR50	CLF1	Q12309	687 aa	Predicted RBP	0.62	□□□□□ -2.31
snR50	snR50	INO1	P11986	533 aa		0.61	□□□□□ -2.31
snR50	snR50	CYC8	P14922	966 aa		0.61	□□□□□ -2.31
snR50	snR50	LSB5	P25369	354 aa		0.61	□□□□□ -2.31
snR50	snR50	KCC4	P25389	1037 aa		0.61	□□□□□ -2.31
snR50	snR50	FUB1	P25659	250 aa		0.61	□□□□□ -2.31
snR50	snR50	PIN4	P34217	668 aa	Known RBP RIP-Chip data	0.61	□□□□□ -2.31	not detected
snR50	snR50	YBR139W	P38109	508 aa		0.61	□□□□□ -2.31
snR50	snR50	RTT107	P38850	1070 aa		0.61	□□□□□ -2.31
snR50	snR50	FAA2	P39518	744 aa		0.61	□□□□□ -2.31
snR50	snR50	SRL1	Q08673	210 aa		0.61	□□□□□ -2.31
snR50	snR50	TGL5	Q12043	749 aa		0.61	□□□□□ -2.31
snR50	snR50	ULA1	Q12059	462 aa		0.61	□□□□□ -2.31
snR50	snR50	TRP2	P00899	507 aa	Known RBP	0.6	□□□□□ -2.31
snR50	snR50	TUP1	P16649	713 aa		0.6	□□□□□ -2.31
snR50	snR50	CLN2	P20438	545 aa		0.6	□□□□□ -2.31
snR50	snR50	YMC1	P32331	307 aa		0.6	□□□□□ -2.31
snR50	snR50	BEM3	P32873	1128 aa		0.6	□□□□□ -2.31
snR50	snR50	RPT1	P33299	467 aa	Known RBP	0.6	□□□□□ -2.31
snR50	snR50	YEL1	P34225	687 aa		0.6	□□□□□ -2.31
snR50	snR50	YMC2	P38087	329 aa		0.6	□□□□□ -2.31
snR50	snR50	YBR259W	P38338	688 aa		0.6	□□□□□ -2.31
snR50	snR50	YHL050C	P38721	697 aa		0.6	□□□□□ -2.31
snR50	snR50	YHR219W	P38900	624 aa		0.6	□□□□□ -2.31
snR50	snR50	PZF1	P39933	429 aa		0.6	□□□□□ -2.31
snR50	snR50	JHD1	P40034	492 aa		0.6	□□□□□ -2.31
snR50	snR50	SKP2	P42843	763 aa		0.6	□□□□□ -2.31
snR50	snR50	NMD5	P46970	1048 aa		0.6	□□□□□ -2.31
snR50	snR50	HDA1	P53973	706 aa		0.6	□□□□□ -2.31
snR50	snR50	ERG13	P54839	491 aa	Known RBP	0.6	□□□□□ -2.31
snR50	snR50	MUS81	Q04149	632 aa	Predicted RBP	0.6	□□□□□ -2.31
snR50	snR50	RTT103	Q05543	409 aa		0.6	□□□□□ -2.31
snR50	snR50	BUD7	Q08754	746 aa		0.6	□□□□□ -2.31
snR50	snR50	BMS1	Q08965	1183 aa	Known RBP	0.6	□□□□□ -2.31
snR50	snR50	CDC3	P32457	520 aa	Known RBP	0.59	□□□□□ -2.31
snR50	snR50	RPD3	P32561	433 aa		0.59	□□□□□ -2.31
snR50	snR50	SCT1	P32784	759 aa		0.59	□□□□□ -2.31
snR50	snR50	PMC1	P38929	1173 aa	Predicted RBP	0.59	□□□□□ -2.31
snR50	snR50	MIT1	P40002	666 aa		0.59	□□□□□ -2.31
snR50	snR50	SNO3	P43544	222 aa		0.59	□□□□□ -2.31
snR50	snR50	GUS1	P46655	708 aa	Known RBP RIP-Chip data	0.59	□□□□□ -2.31	not detected
snR50	snR50	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	0.59	□□□□□ -2.31	not detected
snR50	snR50	PAN2	P53010	1115 aa	Predicted RBP	0.59	□□□□□ -2.31
snR50	snR50	TYW3	P53177	273 aa		0.59	□□□□□ -2.31
snR50	snR50	DUS1	P53759	423 aa	Known RBP	0.59	□□□□□ -2.31
snR50	snR50	TEX1	P53851	422 aa	Known RBP	0.59	□□□□□ -2.31
snR50	snR50	MRPL1	Q04599	285 aa		0.59	□□□□□ -2.31
snR50	snR50	YPR089W	O13585	888 aa		0.58	□□□□□ -2.32
snR50	snR50	PHO5	P00635	467 aa		0.58	□□□□□ -2.32
snR50	snR50	THR1	P17423	357 aa	Known RBP	0.58	□□□□□ -2.32
snR50	snR50	RFA1	P22336	621 aa	Known RBP	0.58	□□□□□ -2.32
snR50	snR50	NPP1	P25353	742 aa		0.58	□□□□□ -2.32
snR50	snR50	URA1	P28272	314 aa	Predicted RBP	0.58	□□□□□ -2.32
snR50	snR50	MGM1	P32266	881 aa		0.58	□□□□□ -2.32
snR50	snR50	PHO11	P35842	467 aa		0.58	□□□□□ -2.32
snR50	snR50	PHO12	P38693	467 aa		0.58	□□□□□ -2.32
snR50	snR50	SFB3	P38810	929 aa		0.58	□□□□□ -2.32
snR50	snR50	NUP60	P39705	539 aa		0.58	□□□□□ -2.32
snR50	snR50	OAF1	P39720	1047 aa	Predicted RBP	0.58	□□□□□ -2.32
snR50	snR50	SIT1	P39980	628 aa		0.58	□□□□□ -2.32
snR50	snR50	UBP7	P40453	1071 aa		0.58	□□□□□ -2.32
snR50	snR50	PFA3	P42836	336 aa		0.58	□□□□□ -2.32
snR50	snR50	KRI1	P42846	591 aa	Known RBP	0.58	□□□□□ -2.32

Retrieved 100 of 5,963 RNA–protein pairs in 57.3 ms