RNA–Protein interactions for RNA: YOR171C

LCB4, Transcript of Sphingoid long-chain base kinase, yeast

Gene LCB4, Length 1,875 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCB4	YOR171C	NOP58	Q12499	511 aa	Known RBP	3.68	□□□□□ -1.82
LCB4	YOR171C	CMP2	P14747	604 aa		3.67	□□□□□ -1.82
LCB4	YOR171C	ANP1	P32629	500 aa		3.67	□□□□□ -1.82
LCB4	YOR171C	LIP5	P32875	414 aa		3.67	□□□□□ -1.82
LCB4	YOR171C	SRP101	P32916	621 aa		3.67	□□□□□ -1.82
LCB4	YOR171C	DOT6	P40059	670 aa	Known RBP	3.67	□□□□□ -1.82
LCB4	YOR171C	VTI1	Q04338	217 aa		3.67	□□□□□ -1.82
LCB4	YOR171C	CDA1	Q06702	301 aa		3.67	□□□□□ -1.82
LCB4	YOR171C	NYV1	Q12255	253 aa		3.67	□□□□□ -1.82
LCB4	YOR171C	CYC1	P00044	109 aa	Predicted RBP	3.67	□□□□□ -1.82
LCB4	YOR171C	VBA3	P25594	458 aa		3.67	□□□□□ -1.82
LCB4	YOR171C	HIR1	P32479	840 aa		3.67	□□□□□ -1.82
LCB4	YOR171C	YKL222C	P35995	705 aa		3.67	□□□□□ -1.82
LCB4	YOR171C	OMA1	P36163	345 aa		3.67	□□□□□ -1.82
LCB4	YOR171C	YHR218W	P38899	603 aa		3.67	□□□□□ -1.82
LCB4	YOR171C	DSS1	P39112	969 aa		3.67	□□□□□ -1.82
LCB4	YOR171C	YNR029C	P53729	429 aa	Known RBP	3.67	□□□□□ -1.82
LCB4	YOR171C	TFB2	Q02939	513 aa		3.67	□□□□□ -1.82
LCB4	YOR171C	ATP25	Q03153	612 aa		3.67	□□□□□ -1.82
LCB4	YOR171C	RRP9	Q06506	573 aa	Known RBP	3.67	□□□□□ -1.82
LCB4	YOR171C	VIP1	Q06685	1146 aa	Known RBP	3.67	□□□□□ -1.82
LCB4	YOR171C	PSR1	Q07800	427 aa		3.67	□□□□□ -1.82
LCB4	YOR171C	MET7	Q08645	548 aa		3.67	□□□□□ -1.82
LCB4	YOR171C	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	3.67	□□□□□ -1.82	not detected
LCB4	YOR171C	GAL10	P04397	699 aa		3.66	□□□□□ -1.82
LCB4	YOR171C	CDC9	P04819	755 aa		3.66	□□□□□ -1.82
LCB4	YOR171C	ATP4	P05626	244 aa		3.66	□□□□□ -1.82
LCB4	YOR171C	NOT3	P06102	836 aa	Known RBP	3.66	□□□□□ -1.82
LCB4	YOR171C	PIF1	P07271	859 aa		3.66	□□□□□ -1.82
LCB4	YOR171C	HOM3	P10869	527 aa		3.66	□□□□□ -1.82
LCB4	YOR171C	MSM1	P22438	575 aa		3.66	□□□□□ -1.82
LCB4	YOR171C	APL2	P36000	726 aa	Predicted RBP	3.66	□□□□□ -1.82
LCB4	YOR171C	RXT2	P38255	430 aa		3.66	□□□□□ -1.82
LCB4	YOR171C	IRC24	P40580	263 aa		3.66	□□□□□ -1.82
LCB4	YOR171C	DAM1	P53267	343 aa		3.66	□□□□□ -1.82
LCB4	YOR171C	CDC45	Q08032	650 aa		3.66	□□□□□ -1.82
LCB4	YOR171C	TMA7	Q3E764	64 aa	Known RBP	3.66	□□□□□ -1.82
LCB4	YOR171C	ADR1	P07248	1323 aa		3.66	□□□□□ -1.82
LCB4	YOR171C	URA1	P28272	314 aa	Predicted RBP	3.65	□□□□□ -1.82
LCB4	YOR171C	VPH1	P32563	840 aa	Known RBP	3.65	□□□□□ -1.82
LCB4	YOR171C	LRG1	P35688	1017 aa		3.65	□□□□□ -1.82
LCB4	YOR171C	RRN3	P36070	627 aa		3.65	□□□□□ -1.82
LCB4	YOR171C	POL12	P38121	705 aa	Predicted RBP	3.65	□□□□□ -1.82
LCB4	YOR171C	APE4	P38821	490 aa		3.65	□□□□□ -1.82
LCB4	YOR171C	SEC9	P40357	651 aa		3.65	□□□□□ -1.82
LCB4	YOR171C	SRB7	P47822	140 aa		3.65	□□□□□ -1.82
LCB4	YOR171C	NIT3	P49954	291 aa		3.65	□□□□□ -1.82
LCB4	YOR171C	RSC1	P53236	928 aa		3.65	□□□□□ -1.82
LCB4	YOR171C	HDA1	P53973	706 aa		3.65	□□□□□ -1.82
LCB4	YOR171C	SND1	Q04007	877 aa		3.65	□□□□□ -1.82
LCB4	YOR171C	YSH1	Q06224	779 aa	Predicted RBP	3.65	□□□□□ -1.82
LCB4	YOR171C	YLR352W	Q06479	807 aa		3.65	□□□□□ -1.82
LCB4	YOR171C	YLR001C	Q07895	862 aa		3.65	□□□□□ -1.82
LCB4	YOR171C	DFG16	Q99234	619 aa		3.65	□□□□□ -1.82
LCB4	YOR171C	SPT7	P35177	1332 aa		3.65	□□□□□ -1.82
LCB4	YOR171C	RFA1	P22336	621 aa	Known RBP	3.64	□□□□□ -1.83
LCB4	YOR171C	GSY1	P23337	708 aa		3.64	□□□□□ -1.83
LCB4	YOR171C	STE13	P33894	931 aa		3.64	□□□□□ -1.83
LCB4	YOR171C	ZRG8	P40021	1076 aa		3.64	□□□□□ -1.83
LCB4	YOR171C	NDE1	P40215	560 aa		3.64	□□□□□ -1.83
LCB4	YOR171C	RAI1	P53063	387 aa	Known RBP	3.64	□□□□□ -1.83
LCB4	YOR171C	YGR012W	P53206	393 aa		3.64	□□□□□ -1.83
LCB4	YOR171C	HOL1	P53389	586 aa		3.64	□□□□□ -1.83
LCB4	YOR171C	PLB2	Q03674	706 aa		3.64	□□□□□ -1.83
LCB4	YOR171C	YPR172W	Q06608	200 aa		3.64	□□□□□ -1.83
LCB4	YOR171C	RSC3	Q06639	885 aa		3.64	□□□□□ -1.83
LCB4	YOR171C	SRD1	P09007	221 aa		3.64	□□□□□ -1.83
LCB4	YOR171C	HSF1	P10961	833 aa		3.64	□□□□□ -1.83
LCB4	YOR171C	ENA1	P13587	1091 aa		3.64	□□□□□ -1.83
LCB4	YOR171C	YCL002C	P25565	263 aa		3.64	□□□□□ -1.83
LCB4	YOR171C	KRR1	P25586	316 aa	Predicted RBP	3.64	□□□□□ -1.83
LCB4	YOR171C	PER1	P25625	357 aa		3.64	□□□□□ -1.83
LCB4	YOR171C	RPD3	P32561	433 aa		3.64	□□□□□ -1.83
LCB4	YOR171C	MND2	P40577	368 aa		3.64	□□□□□ -1.83
LCB4	YOR171C	HXT16	P47185	567 aa		3.64	□□□□□ -1.83
LCB4	YOR171C	TAD1	P53065	400 aa		3.64	□□□□□ -1.83
LCB4	YOR171C	YGR016W	P53209	190 aa		3.64	□□□□□ -1.83
LCB4	YOR171C	BNI5	P53890	448 aa	Known RBP	3.64	□□□□□ -1.83
LCB4	YOR171C	TIM11	P81449	96 aa	Predicted RBP	3.64	□□□□□ -1.83
LCB4	YOR171C	ENA2	Q01896	1091 aa		3.64	□□□□□ -1.83
LCB4	YOR171C	ENA5	Q12691	1091 aa		3.64	□□□□□ -1.83
LCB4	YOR171C	SPE1	P08432	466 aa		3.63	□□□□□ -1.83
LCB4	YOR171C	NAT1	P12945	854 aa	Known RBP	3.63	□□□□□ -1.83
LCB4	YOR171C	YEF3	P16521	1044 aa	Known RBP	3.63	□□□□□ -1.83
LCB4	YOR171C	DAL7	P21826	554 aa		3.63	□□□□□ -1.83
LCB4	YOR171C	GFD2	P25370	566 aa	Known RBP	3.63	□□□□□ -1.83
LCB4	YOR171C	SSH4	P32343	579 aa		3.63	□□□□□ -1.83
LCB4	YOR171C	ECM32	P32644	1121 aa	Known RBP	3.63	□□□□□ -1.83
LCB4	YOR171C	PEX5	P35056	612 aa		3.63	□□□□□ -1.83
LCB4	YOR171C	MCD4	P36051	919 aa		3.63	□□□□□ -1.83
LCB4	YOR171C	RKM3	P38222	552 aa		3.63	□□□□□ -1.83
LCB4	YOR171C	YJR120W	P47157	116 aa		3.63	□□□□□ -1.83
LCB4	YOR171C	NOG2	P53742	486 aa	Known RBP	3.63	□□□□□ -1.83
LCB4	YOR171C	SNO2	P53823	222 aa		3.63	□□□□□ -1.83
LCB4	YOR171C	YNL193W	P53870	558 aa		3.63	□□□□□ -1.83
LCB4	YOR171C	LRS4	Q04087	347 aa	Known RBP	3.63	□□□□□ -1.83
LCB4	YOR171C	REH1	Q06709	432 aa		3.63	□□□□□ -1.83
LCB4	YOR171C	APC5	Q08683	685 aa		3.63	□□□□□ -1.83
LCB4	YOR171C	DBP10	Q12389	995 aa	Known RBP	3.63	□□□□□ -1.83
LCB4	YOR171C	TMA17	Q12513	150 aa		3.63	□□□□□ -1.83

Retrieved 100 of 5,963 RNA–protein pairs in 10.6 ms