RNA–Protein interactions for RNA: YMR128W

ECM16, Transcript of Essential DEAH-box ATP-dependent RNA helicase specific to U3 snoRNP, yeast

Gene ECM16, Length 3,804 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ECM16	YMR128W	YFL034W	P43564	1073 aa		4.1	□□□□□ -1.75
ECM16	YMR128W	GDE1	Q02979	1223 aa		4.1	□□□□□ -1.75
ECM16	YMR128W	SAS4	Q04003	481 aa		4.1	□□□□□ -1.75
ECM16	YMR128W	OSW1	Q08692	278 aa		4.1	□□□□□ -1.75
ECM16	YMR128W	SEC39	Q12745	709 aa		4.1	□□□□□ -1.75
ECM16	YMR128W	RAS1	P01119	309 aa		4.09	□□□□□ -1.75
ECM16	YMR128W	NAM7	P30771	971 aa	Known RBP	4.09	□□□□□ -1.75
ECM16	YMR128W	LOS1	P33418	1100 aa	Predicted RBP	4.09	□□□□□ -1.75
ECM16	YMR128W	VID27	P40157	782 aa		4.09	□□□□□ -1.75
ECM16	YMR128W	CIT3	P43635	486 aa		4.09	□□□□□ -1.75
ECM16	YMR128W	TFB2	Q02939	513 aa		4.09	□□□□□ -1.75
ECM16	YMR128W	YDR341C	Q05506	607 aa	Known RBP	4.09	□□□□□ -1.75
ECM16	YMR128W	RLP24	Q07915	199 aa	Known RBP	4.09	□□□□□ -1.75
ECM16	YMR128W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	4.09	□□□□□ -1.75	RIP-Chip
ECM16	YMR128W	SEC14	P24280	304 aa	Known RBP	4.09	□□□□□ -1.75
ECM16	YMR128W	LCB1	P25045	558 aa	Known RBP	4.09	□□□□□ -1.75
ECM16	YMR128W	RDH54	P38086	958 aa		4.09	□□□□□ -1.75
ECM16	YMR128W	AMN1	P38285	549 aa	Predicted RBP	4.09	□□□□□ -1.75
ECM16	YMR128W	SMX2	P40204	77 aa	Known RBP	4.09	□□□□□ -1.75
ECM16	YMR128W	NTA1	P40354	457 aa		4.09	□□□□□ -1.75
ECM16	YMR128W	SEC26	P41810	973 aa	Known RBP	4.09	□□□□□ -1.75
ECM16	YMR128W	ENP2	P48234	707 aa	Known RBP	4.09	□□□□□ -1.75
ECM16	YMR128W	MAL11	P53048	616 aa		4.09	□□□□□ -1.75
ECM16	YMR128W	BTN2	P53286	410 aa		4.09	□□□□□ -1.75
ECM16	YMR128W	IRC4	Q03036	179 aa		4.09	□□□□□ -1.75
ECM16	YMR128W	MRD1	Q06106	887 aa	Known RBP	4.09	□□□□□ -1.75
ECM16	YMR128W	PRP4	P20053	465 aa	Known RBP	4.09	□□□□□ -1.76
ECM16	YMR128W	UBP9	P39967	754 aa		4.09	□□□□□ -1.76
ECM16	YMR128W	RIM8	P53179	542 aa		4.09	□□□□□ -1.76
ECM16	YMR128W	UBX2	Q04228	584 aa		4.09	□□□□□ -1.76
ECM16	YMR128W	SMD2	Q06217	110 aa	Known RBP	4.09	□□□□□ -1.76
ECM16	YMR128W	UTP4	Q06679	776 aa	Known RBP	4.09	□□□□□ -1.76
ECM16	YMR128W	BDF2	Q07442	638 aa		4.09	□□□□□ -1.76
ECM16	YMR128W	ACM1	Q08981	209 aa		4.09	□□□□□ -1.76
ECM16	YMR128W	GRX1	P25373	110 aa	Known RBP	4.08	□□□□□ -1.76
ECM16	YMR128W	TRK2	P28584	889 aa		4.08	□□□□□ -1.76
ECM16	YMR128W	YME2	P32843	850 aa		4.08	□□□□□ -1.76
ECM16	YMR128W	NFU1	P32860	256 aa		4.08	□□□□□ -1.76
ECM16	YMR128W	SPP381	P38282	291 aa	Predicted RBP	4.08	□□□□□ -1.76
ECM16	YMR128W	TOS3	P43637	560 aa		4.08	□□□□□ -1.76
ECM16	YMR128W	SKP1	P52286	194 aa		4.08	□□□□□ -1.76
ECM16	YMR128W	NCE103	P53615	221 aa		4.08	□□□□□ -1.76
ECM16	YMR128W	FIG2	P25653	1609 aa		4.08	□□□□□ -1.76
ECM16	YMR128W	ARG82	P07250	355 aa		4.08	□□□□□ -1.76
ECM16	YMR128W	YMR085W	P0CF18	432 aa		4.08	□□□□□ -1.76
ECM16	YMR128W	YEL076C-A	P0CX16	216 aa		4.08	□□□□□ -1.76
ECM16	YMR128W	YLR464W	P0CX17	216 aa		4.08	□□□□□ -1.76
ECM16	YMR128W	KAR3	P17119	729 aa		4.08	□□□□□ -1.76
ECM16	YMR128W	BAS1	P22035	811 aa		4.08	□□□□□ -1.76
ECM16	YMR128W	YEL076C	P39971	216 aa		4.08	□□□□□ -1.76
ECM16	YMR128W	ICP55	P40051	511 aa		4.08	□□□□□ -1.76
ECM16	YMR128W	UTP7	P40055	554 aa	Known RBP	4.08	□□□□□ -1.76
ECM16	YMR128W	URB2	P47108	1174 aa		4.08	□□□□□ -1.76
ECM16	YMR128W	HUL5	P53119	910 aa		4.08	□□□□□ -1.76
ECM16	YMR128W	SDA1	P53313	767 aa	Known RBP	4.08	□□□□□ -1.76
ECM16	YMR128W	YNR040W	P53736	256 aa		4.08	□□□□□ -1.76
ECM16	YMR128W	NCS2	P53923	493 aa	Predicted RBP	4.08	□□□□□ -1.76
ECM16	YMR128W	CUS1	Q02554	436 aa	Predicted RBP	4.08	□□□□□ -1.76
ECM16	YMR128W	YDL057W	Q07379	328 aa		4.08	□□□□□ -1.76
ECM16	YMR128W	ASF1	P32447	279 aa		4.08	□□□□□ -1.76
ECM16	YMR128W	VPS35	P34110	944 aa		4.08	□□□□□ -1.76
ECM16	YMR128W	THI6	P41835	540 aa		4.08	□□□□□ -1.76
ECM16	YMR128W	RPT4	P53549	437 aa	Known RBP	4.08	□□□□□ -1.76
ECM16	YMR128W	LCB5	Q06147	687 aa	Known RBP	4.08	□□□□□ -1.76
ECM16	YMR128W	CIT1	P00890	479 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	FLP1	P03870	423 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	OM45	P16547	393 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	APL1	P27351	700 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	GCD6	P32501	712 aa	Known RBP	4.07	□□□□□ -1.76
ECM16	YMR128W	SWI3	P32591	825 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	PEX2	P32800	271 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	MDL2	P33311	773 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	JNM1	P36224	373 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	RIM11	P38615	370 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	MSC7	P38694	644 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	ASE1	P50275	885 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	SLK19	Q08581	821 aa	Known RBP	4.07	□□□□□ -1.76
ECM16	YMR128W	DAS2	Q12084	232 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	TIP41	Q12199	356 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	MRP10	O75012	95 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	DPH5	P32469	300 aa	Predicted RBP	4.07	□□□□□ -1.76
ECM16	YMR128W	SMC1	P32908	1225 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	PBP2	P38151	413 aa	Known RBP RIP-Chip data	4.07	□□□□□ -1.76	not detected
ECM16	YMR128W	FZO1	P38297	855 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	YBP1	P38315	674 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	TDA3	P38758	523 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	HXT8	P40886	569 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	MAD1	P40957	749 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	VTC2	P43585	828 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	PFD1	P46988	109 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	TMA22	P47089	198 aa	Predicted RBP	4.07	□□□□□ -1.76
ECM16	YMR128W	GRX3	Q03835	250 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	REC8	Q12188	680 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	Q0182	Q9ZZW1	134 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	HKR1	P41809	1802 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	RAD3	P06839	778 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	CLN3	P13365	580 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	PPS1	P38148	807 aa		4.07	□□□□□ -1.76
ECM16	YMR128W	OLA1	P38219	394 aa	Known RBP	4.07	□□□□□ -1.76
ECM16	YMR128W	JJJ2	P46997	583 aa		4.07	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 9.7 ms