RNA–Protein interactions for RNA: YML029W

USA1, Transcript of Scaffold subunit of the Hrd1p ubiquitin ligase, yeastyeast

Gene USA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USA1YML029W ESL1P40456 1118 aa4.21□□□□□ -1.74
USA1YML029W YNL108CP53929 270 aa4.21□□□□□ -1.74
USA1YML029W YDL057WQ07379 328 aa4.21□□□□□ -1.74
USA1YML029W YOL075CQ08234 1294 aa4.21□□□□□ -1.74
USA1YML029W PUS1Q12211 544 aaKnown RBP4.21□□□□□ -1.74
USA1YML029W YET1P35723 206 aa4.2□□□□□ -1.74
USA1YML029W RPL34BP40525 121 aaKnown RBP4.2□□□□□ -1.74
USA1YML029W FYV8P46949 817 aaKnown RBP4.2□□□□□ -1.74
USA1YML029W ATG36P46983 293 aa4.2□□□□□ -1.74
USA1YML029W ESBP6P53918 673 aa4.2□□□□□ -1.74
USA1YML029W TSR1Q07381 788 aaKnown RBP4.2□□□□□ -1.74
USA1YML029W YPL216WQ08964 1102 aa4.2□□□□□ -1.74
USA1YML029W SSD1P24276 1250 aaKnown RBP RIP-Chip data4.2□□□□□ -1.74not detected
USA1YML029W SCJ1P25303 377 aa4.2□□□□□ -1.74
USA1YML029W MUD1P32605 298 aaKnown RBP4.2□□□□□ -1.74
USA1YML029W SPC42P36094 363 aa4.2□□□□□ -1.74
USA1YML029W PXL1P36166 706 aa4.2□□□□□ -1.74
USA1YML029W YBL036CP38197 257 aa4.2□□□□□ -1.74
USA1YML029W YHL026CP38740 315 aa4.2□□□□□ -1.74
USA1YML029W JHD1P40034 492 aa4.2□□□□□ -1.74
USA1YML029W HXT8P40886 569 aa4.2□□□□□ -1.74
USA1YML029W LCB2P40970 561 aa4.2□□□□□ -1.74
USA1YML029W ACF4P47129 309 aa4.2□□□□□ -1.74
USA1YML029W SGM1P47166 707 aa4.2□□□□□ -1.74
USA1YML029W GCV2P49095 1034 aa4.2□□□□□ -1.74
USA1YML029W SCY1P53009 804 aa4.2□□□□□ -1.74
USA1YML029W TIM8P57744 87 aa4.2□□□□□ -1.74
USA1YML029W MUK1Q02866 612 aa4.2□□□□□ -1.74
USA1YML029W VPS72Q03388 795 aa4.2□□□□□ -1.74
USA1YML029W TRS130Q03660 1102 aa4.2□□□□□ -1.74
USA1YML029W YLR297WQ05899 129 aa4.2□□□□□ -1.74
USA1YML029W YLR455WQ06188 304 aa4.2□□□□□ -1.74
USA1YML029W CSR1Q06705 408 aaKnown RBP4.2□□□□□ -1.74
USA1YML029W DNL4Q08387 944 aaPredicted RBP4.2□□□□□ -1.74
USA1YML029W RPS3P05750 240 aaKnown RBP4.19□□□□□ -1.74
USA1YML029W HAP2P06774 265 aa4.19□□□□□ -1.74
USA1YML029W DAL7P21826 554 aa4.19□□□□□ -1.74
USA1YML029W YHR202WP38887 602 aa4.19□□□□□ -1.74
USA1YML029W TVP23P38962 199 aa4.19□□□□□ -1.74
USA1YML029W TOS3P43637 560 aa4.19□□□□□ -1.74
USA1YML029W ASN1P49089 572 aaKnown RBP4.19□□□□□ -1.74
USA1YML029W VPS75P53853 264 aa4.19□□□□□ -1.74
USA1YML029W CTR9P89105 1077 aa4.19□□□□□ -1.74
USA1YML029W YAP7Q08182 245 aa4.19□□□□□ -1.74
USA1YML029W NEW1Q08972 1196 aaKnown RBP4.19□□□□□ -1.74
USA1YML029W SPE3Q12074 293 aaKnown RBP4.19□□□□□ -1.74
USA1YML029W SPT2P06843 333 aaPredicted RBP4.19□□□□□ -1.74
USA1YML029W ATP1P07251 545 aaKnown RBP4.19□□□□□ -1.74
USA1YML029W PHO13P19881 312 aa4.19□□□□□ -1.74
USA1YML029W MSH3P25336 1018 aa4.19□□□□□ -1.74
USA1YML029W TRK2P28584 889 aa4.19□□□□□ -1.74
USA1YML029W SYN8P31377 255 aa4.19□□□□□ -1.74
USA1YML029W SEC21P32074 935 aaKnown RBP4.19□□□□□ -1.74
USA1YML029W HMT1P38074 348 aa4.19□□□□□ -1.74
USA1YML029W YMC2P38087 329 aa4.19□□□□□ -1.74
USA1YML029W RGD1P38339 666 aa4.19□□□□□ -1.74
USA1YML029W UBX7P38349 436 aa4.19□□□□□ -1.74
USA1YML029W MIP6P38760 659 aaKnown RBP4.19□□□□□ -1.74
USA1YML029W SMC2P38989 1170 aaKnown RBP4.19□□□□□ -1.74
USA1YML029W YER186CP40101 306 aa4.19□□□□□ -1.74
USA1YML029W RRP15Q06511 250 aaPredicted RBP4.19□□□□□ -1.74
USA1YML029W FAL1Q12099 399 aaKnown RBP4.19□□□□□ -1.74
USA1YML029W YDR461C-AQ2V2P7 80 aa4.19□□□□□ -1.74
USA1YML029W RPS9AO13516 197 aaKnown RBP4.18□□□□□ -1.74
USA1YML029W SNF1P06782 633 aaKnown RBP4.18□□□□□ -1.74
USA1YML029W CHS2P14180 963 aa4.18□□□□□ -1.74
USA1YML029W CYC8P14922 966 aa4.18□□□□□ -1.74
USA1YML029W KGD2P19262 463 aaPredicted RBP4.18□□□□□ -1.74
USA1YML029W KIP1P28742 1111 aa4.18□□□□□ -1.74
USA1YML029W RAD54P32863 898 aa4.18□□□□□ -1.74
USA1YML029W APN2P38207 520 aa4.18□□□□□ -1.74
USA1YML029W SAF1P38352 637 aa4.18□□□□□ -1.74
USA1YML029W SPT8P38915 602 aa4.18□□□□□ -1.74
USA1YML029W UBP5P39944 805 aa4.18□□□□□ -1.74
USA1YML029W YEL023CP39992 682 aa4.18□□□□□ -1.74
USA1YML029W RPS0BP46654 252 aaKnown RBP4.18□□□□□ -1.74
USA1YML029W MAG2Q06436 670 aaKnown RBP4.18□□□□□ -1.74
USA1YML029W OPY2Q06810 360 aa4.18□□□□□ -1.74
USA1YML029W MRN1Q08925 612 aaKnown RBP RIP-Chip data4.18□□□□□ -1.74not detected
USA1YML029W NCR1Q12200 1170 aa4.18□□□□□ -1.74
USA1YML029W TOM1Q03280 3268 aa4.18□□□□□ -1.74
USA1YML029W RPS6AP0CX37 236 aaKnown RBP4.18□□□□□ -1.74
USA1YML029W RPS6BP0CX38 236 aaPredicted RBP4.18□□□□□ -1.74
USA1YML029W ASP3-2P0CX77 362 aa4.18□□□□□ -1.74
USA1YML029W ASP3-3P0CX78 362 aa4.18□□□□□ -1.74
USA1YML029W ASP3-4P0CX79 362 aa4.18□□□□□ -1.74
USA1YML029W ASP3-1P0CZ17 362 aa4.18□□□□□ -1.74
USA1YML029W SEC65P29478 273 aa4.18□□□□□ -1.74
USA1YML029W MET4P32389 672 aa4.18□□□□□ -1.74
USA1YML029W PIN4P34217 668 aaKnown RBP RIP-Chip data4.18□□□□□ -1.74not detected
USA1YML029W YEL1P34225 687 aa4.18□□□□□ -1.74
USA1YML029W RPC25P35718 212 aa4.18□□□□□ -1.74
USA1YML029W DRE2P36152 348 aa4.18□□□□□ -1.74
USA1YML029W SHM1P37292 490 aaPredicted RBP4.18□□□□□ -1.74
USA1YML029W VID24P38263 362 aa4.18□□□□□ -1.74
USA1YML029W OPT1P40897 799 aa4.18□□□□□ -1.74
USA1YML029W AVT1P47082 602 aa4.18□□□□□ -1.74
USA1YML029W STR2P47164 639 aa4.18□□□□□ -1.74
USA1YML029W ALG11P53954 548 aaKnown RBP4.18□□□□□ -1.74
USA1YML029W TIF35Q04067 274 aaKnown RBP4.18□□□□□ -1.74
Retrieved 100 of 5,963 RNA–protein pairs in 69.8 ms