RNA–Protein interactions for RNA: YIL040W

APQ12, Transcript of Protein required for nuclear envelope morphology, yeast

Gene APQ12, Length 417 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
APQ12	YIL040W	HDA1	P53973	706 aa		2.72	□□□□□ -1.97
APQ12	YIL040W	FAL1	Q12099	399 aa	Known RBP	2.72	□□□□□ -1.97
APQ12	YIL040W	ERG11	P10614	530 aa		2.71	□□□□□ -1.98
APQ12	YIL040W	MNR2	P35724	969 aa		2.71	□□□□□ -1.98
APQ12	YIL040W	XBP1	P40489	647 aa		2.71	□□□□□ -1.98
APQ12	YIL040W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	2.71	□□□□□ -1.98	not detected
APQ12	YIL040W	CCM1	P48237	864 aa	Predicted RBP	2.71	□□□□□ -1.98
APQ12	YIL040W	TPO2	P53283	614 aa		2.71	□□□□□ -1.98
APQ12	YIL040W	YAP1802	P53309	568 aa		2.71	□□□□□ -1.98
APQ12	YIL040W	VPS16	Q03308	798 aa		2.71	□□□□□ -1.98
APQ12	YIL040W	ASM4	Q05166	528 aa		2.71	□□□□□ -1.98
APQ12	YIL040W	YLR149C	Q99296	730 aa		2.71	□□□□□ -1.98
APQ12	YIL040W	AGP1	P25376	633 aa		2.7	□□□□□ -1.98
APQ12	YIL040W	AFR1	P33304	620 aa		2.7	□□□□□ -1.98
APQ12	YIL040W	GLG1	P36143	616 aa		2.7	□□□□□ -1.98
APQ12	YIL040W	REV7	P38927	245 aa		2.7	□□□□□ -1.98
APQ12	YIL040W	SAK1	P38990	1142 aa		2.7	□□□□□ -1.98
APQ12	YIL040W	FAA4	P47912	694 aa	Known RBP	2.7	□□□□□ -1.98
APQ12	YIL040W	CTR1	P49573	406 aa		2.7	□□□□□ -1.98
APQ12	YIL040W	UBC11	P52492	156 aa		2.7	□□□□□ -1.98
APQ12	YIL040W	GDE1	Q02979	1223 aa		2.7	□□□□□ -1.98
APQ12	YIL040W	OYE2	Q03558	400 aa	Known RBP	2.7	□□□□□ -1.98
APQ12	YIL040W	MUS81	Q04149	632 aa	Predicted RBP	2.7	□□□□□ -1.98
APQ12	YIL040W	OSW1	Q08692	278 aa		2.7	□□□□□ -1.98
APQ12	YIL040W	YLR415C	O13578	112 aa		2.69	□□□□□ -1.98
APQ12	YIL040W	SPC29	P33419	253 aa		2.69	□□□□□ -1.98
APQ12	YIL040W	VBA5	P36172	582 aa		2.69	□□□□□ -1.98
APQ12	YIL040W	ERT1	P38140	529 aa		2.69	□□□□□ -1.98
APQ12	YIL040W	BDH2	P39713	417 aa		2.69	□□□□□ -1.98
APQ12	YIL040W	PAC2	P39937	518 aa		2.69	□□□□□ -1.98
APQ12	YIL040W	LTP1	P40347	161 aa		2.69	□□□□□ -1.98
APQ12	YIL040W	UBC9	P50623	157 aa	Predicted RBP	2.69	□□□□□ -1.98
APQ12	YIL040W	DUS1	P53759	423 aa	Known RBP	2.69	□□□□□ -1.98
APQ12	YIL040W	TDA9	Q04545	1251 aa		2.69	□□□□□ -1.98
APQ12	YIL040W	SLK19	Q08581	821 aa	Known RBP	2.69	□□□□□ -1.98
APQ12	YIL040W	TGL5	Q12043	749 aa		2.69	□□□□□ -1.98
APQ12	YIL040W	NUP1	P20676	1076 aa		2.68	□□□□□ -1.98
APQ12	YIL040W	RSP5	P39940	809 aa	Known RBP	2.68	□□□□□ -1.98
APQ12	YIL040W	ARG2	P40360	574 aa		2.68	□□□□□ -1.98
APQ12	YIL040W	HOS4	P40480	1083 aa		2.68	□□□□□ -1.98
APQ12	YIL040W	HAL9	Q12180	1030 aa		2.68	□□□□□ -1.98
APQ12	YIL040W	CYS3	P31373	394 aa	Known RBP	2.67	□□□□□ -1.98
APQ12	YIL040W	HIR1	P32479	840 aa		2.67	□□□□□ -1.98
APQ12	YIL040W	PFA3	P42836	336 aa		2.67	□□□□□ -1.98
APQ12	YIL040W	SSY5	P47002	699 aa		2.67	□□□□□ -1.98
APQ12	YIL040W	RRP15	Q06511	250 aa	Predicted RBP	2.67	□□□□□ -1.98
APQ12	YIL040W	CCR4	P31384	837 aa	Known RBP	2.66	□□□□□ -1.98
APQ12	YIL040W	REC104	P33323	182 aa		2.66	□□□□□ -1.98
APQ12	YIL040W	TOK1	P40310	691 aa		2.66	□□□□□ -1.98
APQ12	YIL040W	MEP2	P41948	499 aa		2.66	□□□□□ -1.98
APQ12	YIL040W	LCD1	Q04377	747 aa		2.66	□□□□□ -1.98
APQ12	YIL040W	RSC3	Q06639	885 aa		2.66	□□□□□ -1.98
APQ12	YIL040W	YOR022C	Q12204	715 aa		2.66	□□□□□ -1.98
APQ12	YIL040W	ATG11	Q12527	1178 aa		2.66	□□□□□ -1.98
APQ12	YIL040W	PGK1	P00560	416 aa	Known RBP	2.65	□□□□□ -1.99
APQ12	YIL040W	PYC1	P11154	1178 aa	Known RBP	2.65	□□□□□ -1.99
APQ12	YIL040W	RPA135	P22138	1203 aa	Known RBP	2.65	□□□□□ -1.99
APQ12	YIL040W	SIT1	P39980	628 aa		2.65	□□□□□ -1.99
APQ12	YIL040W	MRK1	P50873	501 aa		2.65	□□□□□ -1.99
APQ12	YIL040W	CWC24	P53769	259 aa		2.65	□□□□□ -1.99
APQ12	YIL040W	YKL033W-A	Q86ZR7	236 aa		2.65	□□□□□ -1.99
APQ12	YIL040W	PRC1	P00729	532 aa		2.64	□□□□□ -1.99
APQ12	YIL040W	FMP30	Q02883	468 aa		2.64	□□□□□ -1.99
APQ12	YIL040W	SHE9	Q04172	456 aa		2.64	□□□□□ -1.99
APQ12	YIL040W	GAD1	Q04792	585 aa		2.64	□□□□□ -1.99
APQ12	YIL040W	SAP190	P36123	1033 aa		2.63	□□□□□ -1.99
APQ12	YIL040W	MUP3	P38734	546 aa		2.63	□□□□□ -1.99
APQ12	YIL040W	SFB3	P38810	929 aa		2.63	□□□□□ -1.99
APQ12	YIL040W	PAN2	P53010	1115 aa	Predicted RBP	2.63	□□□□□ -1.99
APQ12	YIL040W	NOP1	P15646	327 aa	Known RBP	2.62	□□□□□ -1.99
APQ12	YIL040W	MVD1	P32377	396 aa	Known RBP	2.62	□□□□□ -1.99
APQ12	YIL040W	SIC1	P38634	284 aa		2.62	□□□□□ -1.99
APQ12	YIL040W	CCT3	P39077	534 aa	Known RBP	2.62	□□□□□ -1.99
APQ12	YIL040W	NOG2	P53742	486 aa	Known RBP	2.62	□□□□□ -1.99
APQ12	YIL040W	CIR2	Q08822	631 aa		2.62	□□□□□ -1.99
APQ12	YIL040W	SIR3	P06701	978 aa		2.61	□□□□□ -1.99
APQ12	YIL040W	TOP3	P13099	656 aa		2.61	□□□□□ -1.99
APQ12	YIL040W	STE4	P18851	423 aa		2.61	□□□□□ -1.99
APQ12	YIL040W	PRI2	P20457	528 aa		2.61	□□□□□ -1.99
APQ12	YIL040W	MRP8	P35719	219 aa		2.61	□□□□□ -1.99
APQ12	YIL040W	PBY1	P38254	753 aa		2.61	□□□□□ -1.99
APQ12	YIL040W	UBS1	P38290	277 aa		2.61	□□□□□ -1.99
APQ12	YIL040W	YBR259W	P38338	688 aa		2.61	□□□□□ -1.99
APQ12	YIL040W	HRB1	P38922	454 aa	Known RBP RIP-Chip data	2.61	□□□□□ -1.99	not detected
APQ12	YIL040W	BAP3	P41815	604 aa		2.61	□□□□□ -1.99
APQ12	YIL040W	MTR3	P48240	250 aa	Predicted RBP	2.61	□□□□□ -1.99
APQ12	YIL040W	NIT3	P49954	291 aa		2.61	□□□□□ -1.99
APQ12	YIL040W	ATG4	P53867	494 aa		2.61	□□□□□ -1.99
APQ12	YIL040W	BUL2	Q03758	920 aa	Known RBP	2.61	□□□□□ -1.99
APQ12	YIL040W	YPR071W	Q12346	211 aa		2.61	□□□□□ -1.99
APQ12	YIL040W	DAL7	P21826	554 aa		2.6	□□□□□ -1.99
APQ12	YIL040W	ASF1	P32447	279 aa		2.6	□□□□□ -1.99
APQ12	YIL040W	STP1	Q00947	519 aa		2.6	□□□□□ -1.99
APQ12	YIL040W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	2.59	□□□□□ -1.99	not detected
APQ12	YIL040W	PRP9	P19736	530 aa	Known RBP	2.59	□□□□□ -1.99
APQ12	YIL040W	APN1	P22936	367 aa		2.59	□□□□□ -1.99
APQ12	YIL040W	TEX1	P53851	422 aa	Known RBP	2.59	□□□□□ -1.99
APQ12	YIL040W	OPI10	Q08202	246 aa		2.59	□□□□□ -1.99
APQ12	YIL040W	STE12	P13574	688 aa		2.58	□□□□□ -2
APQ12	YIL040W	HEM3	P28789	327 aa		2.58	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 43.8 ms