RNA–Protein interactions for RNA: YML112W

CTK3, Transcript of Gamma subunit of C-terminal domain kinase I, yeast

Gene CTK3, Length 891 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CTK3	YML112W	YML122C	Q03207	126 aa		4.08	□□□□□ -1.76
CTK3	YML112W	LAS17	Q12446	633 aa		4.08	□□□□□ -1.76
CTK3	YML112W	OSH2	Q12451	1283 aa		4.08	□□□□□ -1.76
CTK3	YML112W	HBN1	Q96VH4	193 aa		4.08	□□□□□ -1.76
CTK3	YML112W	FBP1	P09201	348 aa		4.07	□□□□□ -1.76
CTK3	YML112W	HRR25	P29295	494 aa	Known RBP	4.07	□□□□□ -1.76
CTK3	YML112W	YIL108W	P40483	696 aa	Known RBP	4.07	□□□□□ -1.76
CTK3	YML112W	CEP3	P40969	608 aa		4.07	□□□□□ -1.76
CTK3	YML112W	CTF4	Q01454	927 aa		4.07	□□□□□ -1.76
CTK3	YML112W	KIN4	Q01919	800 aa		4.07	□□□□□ -1.76
CTK3	YML112W	HSP60	P19882	572 aa	Known RBP	4.06	□□□□□ -1.76
CTK3	YML112W	PET10	P36139	283 aa		4.06	□□□□□ -1.76
CTK3	YML112W	HDA1	P53973	706 aa		4.06	□□□□□ -1.76
CTK3	YML112W	MSD1	P15179	658 aa	Known RBP	4.05	□□□□□ -1.76
CTK3	YML112W	TYE7	P33122	291 aa	Predicted RBP	4.05	□□□□□ -1.76
CTK3	YML112W	TIM54	P47045	478 aa		4.05	□□□□□ -1.76
CTK3	YML112W	YGR125W	P53273	1036 aa		4.05	□□□□□ -1.76
CTK3	YML112W	YKR011C	Q02209	353 aa		4.05	□□□□□ -1.76
CTK3	YML112W	CIT1	P00890	479 aa		4.04	□□□□□ -1.76
CTK3	YML112W	TOP3	P13099	656 aa		4.04	□□□□□ -1.76
CTK3	YML112W	CHS7	P38843	316 aa		4.04	□□□□□ -1.76
CTK3	YML112W	SDP1	P40479	209 aa		4.04	□□□□□ -1.76
CTK3	YML112W	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	4.04	□□□□□ -1.76	not detected
CTK3	YML112W	SLU7	Q02775	382 aa	Known RBP	4.04	□□□□□ -1.76
CTK3	YML112W	URA1	P28272	314 aa	Predicted RBP	4.03	□□□□□ -1.76
CTK3	YML112W	EFT1	P32324	842 aa	Known RBP	4.03	□□□□□ -1.76
CTK3	YML112W	HUL4	P40985	892 aa		4.03	□□□□□ -1.76
CTK3	YML112W	YJL049W	P47048	450 aa		4.03	□□□□□ -1.76
CTK3	YML112W	PEX19	Q07418	342 aa		4.03	□□□□□ -1.76
CTK3	YML112W	FLC1	Q08967	793 aa		4.03	□□□□□ -1.76
CTK3	YML112W	ENV7	Q12003	364 aa		4.03	□□□□□ -1.76
CTK3	YML112W	RPS9A	O13516	197 aa	Known RBP	4.02	□□□□□ -1.77
CTK3	YML112W	TRP4	P07285	380 aa	Predicted RBP	4.02	□□□□□ -1.77
CTK3	YML112W	MPH2	P0CD99	609 aa		4.02	□□□□□ -1.77
CTK3	YML112W	SEC21	P32074	935 aa	Known RBP	4.02	□□□□□ -1.77
CTK3	YML112W	KTR4	P38131	464 aa		4.02	□□□□□ -1.77
CTK3	YML112W	CTF8	P38877	133 aa		4.02	□□□□□ -1.77
CTK3	YML112W	UBP6	P43593	499 aa	Known RBP	4.02	□□□□□ -1.77
CTK3	YML112W	BUL1	P48524	976 aa		4.02	□□□□□ -1.77
CTK3	YML112W	HUL5	P53119	910 aa		4.02	□□□□□ -1.77
CTK3	YML112W	YDL124W	Q07551	312 aa	Known RBP	4.02	□□□□□ -1.77
CTK3	YML112W	ERG4	P25340	473 aa		4.01	□□□□□ -1.77
CTK3	YML112W	CYS3	P31373	394 aa	Known RBP	4.01	□□□□□ -1.77
CTK3	YML112W	SUL1	P38359	859 aa		4.01	□□□□□ -1.77
CTK3	YML112W	YHR020W	P38708	688 aa	Known RBP	4.01	□□□□□ -1.77
CTK3	YML112W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.01	□□□□□ -1.77	not detected
CTK3	YML112W	NIT3	P49954	291 aa		4.01	□□□□□ -1.77
CTK3	YML112W	TAF8	Q03750	510 aa		4.01	□□□□□ -1.77
CTK3	YML112W	YLR040C	Q07988	224 aa		4.01	□□□□□ -1.77
CTK3	YML112W	YOL073C	Q08232	322 aa		4.01	□□□□□ -1.77
CTK3	YML112W	SWM1	Q12379	170 aa		4.01	□□□□□ -1.77
CTK3	YML112W	YHR078W	P38799	552 aa		4	□□□□□ -1.77
CTK3	YML112W	RSP5	P39940	809 aa	Known RBP	4	□□□□□ -1.77
CTK3	YML112W	PUS2	P53167	370 aa		4	□□□□□ -1.77
CTK3	YML112W	NOG2	P53742	486 aa	Known RBP	4	□□□□□ -1.77
CTK3	YML112W	ERG5	P54781	538 aa		4	□□□□□ -1.77
CTK3	YML112W	TOM70	P07213	617 aa	Known RBP	3.99	□□□□□ -1.77
CTK3	YML112W	TUB3	P09734	445 aa	Known RBP	3.99	□□□□□ -1.77
CTK3	YML112W	DAL7	P21826	554 aa		3.99	□□□□□ -1.77
CTK3	YML112W	CTF13	P35203	478 aa		3.99	□□□□□ -1.77
CTK3	YML112W	YGR283C	P53336	341 aa	Predicted RBP	3.99	□□□□□ -1.77
CTK3	YML112W	CAN1	P04817	590 aa		3.98	□□□□□ -1.77
CTK3	YML112W	BET3	P36149	193 aa		3.98	□□□□□ -1.77
CTK3	YML112W	GGA2	P38817	585 aa	Known RBP	3.98	□□□□□ -1.77
CTK3	YML112W	NNF1	P47149	201 aa		3.98	□□□□□ -1.77
CTK3	YML112W	DAM1	P53267	343 aa		3.98	□□□□□ -1.77
CTK3	YML112W	HAL9	Q12180	1030 aa		3.98	□□□□□ -1.77
CTK3	YML112W	TRM11	Q12463	433 aa		3.98	□□□□□ -1.77
CTK3	YML112W	ALG7	P07286	448 aa		3.97	□□□□□ -1.77
CTK3	YML112W	RAD53	P22216	821 aa		3.97	□□□□□ -1.77
CTK3	YML112W	OAR1	P35731	278 aa		3.97	□□□□□ -1.77
CTK3	YML112W	EMC3	P36039	253 aa		3.97	□□□□□ -1.77
CTK3	YML112W	MOH1	P38191	138 aa		3.97	□□□□□ -1.77
CTK3	YML112W	VHR1	P40522	640 aa		3.97	□□□□□ -1.77
CTK3	YML112W	GYP8	P43570	497 aa		3.97	□□□□□ -1.77
CTK3	YML112W	TAD1	P53065	400 aa		3.97	□□□□□ -1.77
CTK3	YML112W	DUS1	P53759	423 aa	Known RBP	3.97	□□□□□ -1.77
CTK3	YML112W	RNT1	Q02555	471 aa		3.97	□□□□□ -1.77
CTK3	YML112W	BDF2	Q07442	638 aa		3.97	□□□□□ -1.77
CTK3	YML112W	PPM2	Q08282	695 aa		3.97	□□□□□ -1.77
CTK3	YML112W	CDC53	Q12018	815 aa	Known RBP	3.97	□□□□□ -1.77
CTK3	YML112W	YOR022C	Q12204	715 aa		3.97	□□□□□ -1.77
CTK3	YML112W	TRM13	Q12383	476 aa		3.97	□□□□□ -1.77
CTK3	YML112W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	3.96	□□□□□ -1.78	not detected
CTK3	YML112W	STI1	P15705	589 aa	Known RBP RIP-Chip data	3.96	□□□□□ -1.78	not detected
CTK3	YML112W	PRP4	P20053	465 aa	Known RBP	3.96	□□□□□ -1.78
CTK3	YML112W	YCL002C	P25565	263 aa		3.96	□□□□□ -1.78
CTK3	YML112W	RPP1	P38786	293 aa		3.96	□□□□□ -1.78
CTK3	YML112W	PZF1	P39933	429 aa		3.96	□□□□□ -1.78
CTK3	YML112W	ALG2	P43636	503 aa		3.96	□□□□□ -1.78
CTK3	YML112W	RTA1	P53047	317 aa		3.96	□□□□□ -1.78
CTK3	YML112W	LRS4	Q04087	347 aa	Known RBP	3.96	□□□□□ -1.78
CTK3	YML112W	YDR514C	Q04408	483 aa		3.96	□□□□□ -1.78
CTK3	YML112W	NSE3	Q05541	303 aa		3.96	□□□□□ -1.78
CTK3	YML112W	PRC1	P00729	532 aa		3.95	□□□□□ -1.78
CTK3	YML112W	SAP190	P36123	1033 aa		3.95	□□□□□ -1.78
CTK3	YML112W	FKH2	P41813	862 aa		3.95	□□□□□ -1.78
CTK3	YML112W	SSY5	P47002	699 aa		3.95	□□□□□ -1.78
CTK3	YML112W	STB4	P50104	949 aa		3.95	□□□□□ -1.78
CTK3	YML112W	ASI2	P53895	289 aa		3.95	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 14.6 ms