RNA–Protein interactions for RNA: YML029W

USA1, Transcript of Scaffold subunit of the Hrd1p ubiquitin ligase, yeast

Gene USA1, Length 2,517 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
USA1	YML029W	KDX1	P36005	433 aa		4.25	□□□□□ -1.73
USA1	YML029W	AZR1	P50080	613 aa		4.25	□□□□□ -1.73
USA1	YML029W	GUP1	P53154	560 aa		4.25	□□□□□ -1.73
USA1	YML029W	RTT102	P53330	157 aa		4.25	□□□□□ -1.73
USA1	YML029W	BRE5	P53741	515 aa	Known RBP	4.25	□□□□□ -1.73
USA1	YML029W	GFD1	Q04839	188 aa	Known RBP	4.25	□□□□□ -1.73
USA1	YML029W	IES4	Q08561	116 aa		4.25	□□□□□ -1.73
USA1	YML029W	SGT2	Q12118	346 aa	Known RBP	4.25	□□□□□ -1.73
USA1	YML029W	VMA1	P17255	1071 aa	Known RBP	4.24	□□□□□ -1.73
USA1	YML029W	PTC3	P34221	468 aa	Known RBP	4.24	□□□□□ -1.73
USA1	YML029W	ADE17	P38009	592 aa	Known RBP	4.24	□□□□□ -1.73
USA1	YML029W	FLR1	P38124	548 aa		4.24	□□□□□ -1.73
USA1	YML029W	BUD16	P39988	312 aa		4.24	□□□□□ -1.73
USA1	YML029W	CCM1	P48237	864 aa	Predicted RBP	4.24	□□□□□ -1.73
USA1	YML029W	HCR1	Q05775	265 aa	Known RBP	4.24	□□□□□ -1.73
USA1	YML029W	GPI13	Q07830	1017 aa		4.24	□□□□□ -1.73
USA1	YML029W	AFT2	Q08957	416 aa		4.24	□□□□□ -1.73
USA1	YML029W	WHI2	P12611	486 aa		4.24	□□□□□ -1.73
USA1	YML029W	APL1	P27351	700 aa		4.24	□□□□□ -1.73
USA1	YML029W	HEM3	P28789	327 aa		4.24	□□□□□ -1.73
USA1	YML029W	NAM7	P30771	971 aa	Known RBP	4.24	□□□□□ -1.73
USA1	YML029W	MIC60	P36112	540 aa		4.24	□□□□□ -1.73
USA1	YML029W	MRPL7	P36519	292 aa		4.24	□□□□□ -1.73
USA1	YML029W	PIH1	P38768	344 aa		4.24	□□□□□ -1.73
USA1	YML029W	CTR1	P49573	406 aa		4.24	□□□□□ -1.73
USA1	YML029W	DIP5	P53388	608 aa		4.24	□□□□□ -1.73
USA1	YML029W	PCD1	Q12524	340 aa		4.24	□□□□□ -1.73
USA1	YML029W	YDR524C-B	Q3E6R4	66 aa		4.24	□□□□□ -1.73
USA1	YML029W	PUP1	P25043	261 aa		4.23	□□□□□ -1.73
USA1	YML029W	RPT1	P33299	467 aa	Known RBP	4.23	□□□□□ -1.73
USA1	YML029W	FTR1	P40088	404 aa		4.23	□□□□□ -1.73
USA1	YML029W	MMF1	P40185	145 aa	Known RBP	4.23	□□□□□ -1.73
USA1	YML029W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.23	□□□□□ -1.73	not detected
USA1	YML029W	DAS1	P47005	663 aa		4.23	□□□□□ -1.73
USA1	YML029W	SMC3	P47037	1230 aa		4.23	□□□□□ -1.73
USA1	YML029W	WAR1	Q03631	944 aa		4.23	□□□□□ -1.73
USA1	YML029W	GIS3	Q12418	502 aa		4.23	□□□□□ -1.73
USA1	YML029W	SSB1	P11484	613 aa	Known RBP	4.23	□□□□□ -1.73
USA1	YML029W	OM45	P16547	393 aa		4.23	□□□□□ -1.73
USA1	YML029W	CDC48	P25694	835 aa	Known RBP	4.23	□□□□□ -1.73
USA1	YML029W	POT1	P27796	417 aa	Known RBP RIP-Chip data	4.23	□□□□□ -1.73	not detected
USA1	YML029W	PSY4	P38193	441 aa		4.23	□□□□□ -1.73
USA1	YML029W	MMS4	P38257	691 aa		4.23	□□□□□ -1.73
USA1	YML029W	OCA5	P38738	679 aa		4.23	□□□□□ -1.73
USA1	YML029W	SSB2	P40150	613 aa	Known RBP	4.23	□□□□□ -1.73
USA1	YML029W	SDS3	P40505	327 aa		4.23	□□□□□ -1.73
USA1	YML029W	RSC8	P43609	557 aa	Known RBP	4.23	□□□□□ -1.73
USA1	YML029W	YGR237C	P50089	785 aa		4.23	□□□□□ -1.73
USA1	YML029W	FOL2	P51601	243 aa	Known RBP	4.23	□□□□□ -1.73
USA1	YML029W	SCS3	P53012	380 aa		4.23	□□□□□ -1.73
USA1	YML029W	NOP13	P53883	403 aa	Known RBP RIP-Chip data	4.23	□□□□□ -1.73	not detected
USA1	YML029W	YNL146W	P53906	100 aa		4.23	□□□□□ -1.73
USA1	YML029W	VTC3	Q02725	835 aa		4.23	□□□□□ -1.73
USA1	YML029W	ERV41	Q04651	352 aa		4.23	□□□□□ -1.73
USA1	YML029W	PIB1	Q06651	286 aa		4.23	□□□□□ -1.73
USA1	YML029W	NOC3	Q07896	663 aa	Predicted RBP	4.23	□□□□□ -1.73
USA1	YML029W	TLG2	Q08144	397 aa		4.23	□□□□□ -1.73
USA1	YML029W	YKL091C	P33324	310 aa	Known RBP	4.22	□□□□□ -1.73
USA1	YML029W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	4.22	□□□□□ -1.73	not detected
USA1	YML029W	YNL134C	P53912	376 aa	Known RBP	4.22	□□□□□ -1.73
USA1	YML029W	ARK1	P53974	638 aa		4.22	□□□□□ -1.73
USA1	YML029W	RPL34A	P87262	121 aa	Predicted RBP	4.22	□□□□□ -1.73
USA1	YML029W	RPA49	Q01080	415 aa	Predicted RBP	4.22	□□□□□ -1.73
USA1	YML029W	SPP382	Q06411	708 aa	Predicted RBP	4.22	□□□□□ -1.73
USA1	YML029W	APC5	Q08683	685 aa		4.22	□□□□□ -1.73
USA1	YML029W	IDI1	P15496	288 aa		4.22	□□□□□ -1.73
USA1	YML029W	GLN3	P18494	730 aa		4.22	□□□□□ -1.73
USA1	YML029W	MCM2	P29469	868 aa		4.22	□□□□□ -1.73
USA1	YML029W	TRM2	P33753	639 aa		4.22	□□□□□ -1.73
USA1	YML029W	PGM2	P37012	569 aa	Known RBP	4.22	□□□□□ -1.73
USA1	YML029W	PPS1	P38148	807 aa		4.22	□□□□□ -1.73
USA1	YML029W	YHR054C	P38780	354 aa		4.22	□□□□□ -1.73
USA1	YML029W	ULP2	P40537	1034 aa	Predicted RBP	4.22	□□□□□ -1.73
USA1	YML029W	LAM5	P43560	674 aa		4.22	□□□□□ -1.73
USA1	YML029W	ALT2	P52892	507 aa		4.22	□□□□□ -1.73
USA1	YML029W	NBP1	P52919	319 aa	Predicted RBP	4.22	□□□□□ -1.73
USA1	YML029W	MCM6	P53091	1017 aa	Known RBP	4.22	□□□□□ -1.73
USA1	YML029W	TAM41	P53230	385 aa		4.22	□□□□□ -1.73
USA1	YML029W	LSC2	P53312	427 aa		4.22	□□□□□ -1.73
USA1	YML029W	GIR2	Q03768	265 aa	Predicted RBP	4.22	□□□□□ -1.73
USA1	YML029W	DOT1	Q04089	582 aa	Known RBP	4.22	□□□□□ -1.73
USA1	YML029W	CDC37	P06101	506 aa	Known RBP	4.21	□□□□□ -1.74
USA1	YML029W	MSD1	P15179	658 aa	Known RBP	4.21	□□□□□ -1.74
USA1	YML029W	SPO11	P23179	398 aa		4.21	□□□□□ -1.74
USA1	YML029W	CYS3	P31373	394 aa	Known RBP	4.21	□□□□□ -1.74
USA1	YML029W	PSE1	P32337	1089 aa	Known RBP	4.21	□□□□□ -1.74
USA1	YML029W	SAP190	P36123	1033 aa		4.21	□□□□□ -1.74
USA1	YML029W	AIP1	P46680	615 aa	Known RBP	4.21	□□□□□ -1.74
USA1	YML029W	MNP1	P53163	194 aa	Predicted RBP	4.21	□□□□□ -1.74
USA1	YML029W	TOF1	P53840	1238 aa		4.21	□□□□□ -1.74
USA1	YML029W	EBS1	Q03466	884 aa	Known RBP	4.21	□□□□□ -1.74
USA1	YML029W	TMA16	Q08687	178 aa		4.21	□□□□□ -1.74
USA1	YML029W	CIR2	Q08822	631 aa		4.21	□□□□□ -1.74
USA1	YML029W	COX11	P19516	300 aa	Known RBP	4.21	□□□□□ -1.74
USA1	YML029W	MRC1	P25588	1096 aa		4.21	□□□□□ -1.74
USA1	YML029W	PSO2	P30620	661 aa		4.21	□□□□□ -1.74
USA1	YML029W	VPH1	P32563	840 aa	Known RBP	4.21	□□□□□ -1.74
USA1	YML029W	KTR2	P33550	425 aa		4.21	□□□□□ -1.74
USA1	YML029W	SLX1	P38324	304 aa		4.21	□□□□□ -1.74
USA1	YML029W	KAP123	P40069	1113 aa	Known RBP	4.21	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 39.7 ms