RNA–Protein interactions for RNA: YPR088C

SRP54, Transcript of Signal recognition particle (SRP) subunit (homolog of mammalian SRP54), yeastyeast

Gene SRP54, Length 1,626 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SRP54YPR088C PRE10P21242 288 aaKnown RBP RIP-Chip data9.12□□□□□ -0.95not detected
SRP54YPR088C YSC83P32792 385 aa9.12□□□□□ -0.95
SRP54YPR088C TIM23P32897 222 aa9.12□□□□□ -0.95
SRP54YPR088C RPC25P35718 212 aa9.12□□□□□ -0.95
SRP54YPR088C EFM2P38347 419 aa9.12□□□□□ -0.95
SRP54YPR088C ROD1Q02805 837 aa9.12□□□□□ -0.95
SRP54YPR088C YLL058WQ12198 575 aa9.12□□□□□ -0.95
SRP54YPR088C YDR461C-AQ2V2P7 80 aa9.12□□□□□ -0.95
SRP54YPR088C APL1P27351 700 aa9.11□□□□□ -0.95
SRP54YPR088C VPS35P34110 944 aa9.11□□□□□ -0.95
SRP54YPR088C YEL1P34225 687 aa9.11□□□□□ -0.95
SRP54YPR088C RTT107P38850 1070 aa9.11□□□□□ -0.95
SRP54YPR088C RPS7BP48164 190 aaKnown RBP9.11□□□□□ -0.95
SRP54YPR088C CAF130P53280 1122 aaPredicted RBP9.11□□□□□ -0.95
SRP54YPR088C YCG1Q06680 1035 aa9.11□□□□□ -0.95
SRP54YPR088C GPI13Q07830 1017 aa9.11□□□□□ -0.95
SRP54YPR088C NOC3Q07896 663 aaPredicted RBP9.11□□□□□ -0.95
SRP54YPR088C NCR1Q12200 1170 aa9.11□□□□□ -0.95
SRP54YPR088C SRF1Q12516 437 aa9.11□□□□□ -0.95
SRP54YPR088C RME1P32338 300 aaKnown RBP9.1□□□□□ -0.95
SRP54YPR088C COT1P32798 439 aa9.1□□□□□ -0.95
SRP54YPR088C LEO1P38439 464 aa9.1□□□□□ -0.95
SRP54YPR088C HFM1P51979 1187 aa9.1□□□□□ -0.95
SRP54YPR088C SCS3P53012 380 aa9.1□□□□□ -0.95
SRP54YPR088C YLR287CQ05881 355 aa9.1□□□□□ -0.95
SRP54YPR088C PLP2Q12017 286 aa9.1□□□□□ -0.95
SRP54YPR088C ECM29P38737 1868 aa9.1□□□□□ -0.95
SRP54YPR088C DED1P06634 604 aaKnown RBP9.09□□□□□ -0.95
SRP54YPR088C SSB1P11484 613 aaKnown RBP9.09□□□□□ -0.95
SRP54YPR088C NAM7P30771 971 aaKnown RBP9.09□□□□□ -0.95
SRP54YPR088C MFT1P33441 392 aaKnown RBP9.09□□□□□ -0.95
SRP54YPR088C MNR2P35724 969 aa9.09□□□□□ -0.95
SRP54YPR088C VFA1P40080 203 aa9.09□□□□□ -0.95
SRP54YPR088C SSB2P40150 613 aaKnown RBP9.09□□□□□ -0.95
SRP54YPR088C GIR2Q03768 265 aaPredicted RBP9.09□□□□□ -0.95
SRP54YPR088C COQ9Q05779 260 aa9.09□□□□□ -0.95
SRP54YPR088C ESC2Q06340 456 aa9.09□□□□□ -0.95
SRP54YPR088C APL4Q12028 832 aa9.09□□□□□ -0.95
SRP54YPR088C HMI1Q12039 706 aa9.09□□□□□ -0.95
SRP54YPR088C CWC2Q12046 339 aaPredicted RBP9.09□□□□□ -0.95
SRP54YPR088C ATG9Q12142 997 aa9.09□□□□□ -0.95
SRP54YPR088C SCP160P06105 1222 aaKnown RBP RIP-Chip data9.09□□□□□ -0.95 RIP-Chip
SRP54YPR088C POX1P13711 748 aa9.09□□□□□ -0.95
SRP54YPR088C MNN4P36044 1178 aa9.09□□□□□ -0.95
SRP54YPR088C ERC1P38767 581 aa9.09□□□□□ -0.95
SRP54YPR088C AVT1P47082 602 aa9.09□□□□□ -0.95
SRP54YPR088C TAM41P53230 385 aa9.09□□□□□ -0.95
SRP54YPR088C CTR9P89105 1077 aa9.09□□□□□ -0.95
SRP54YPR088C FAL1Q12099 399 aaKnown RBP9.09□□□□□ -0.95
SRP54YPR088C RRP6Q12149 733 aaKnown RBP9.09□□□□□ -0.95
SRP54YPR088C IRE1P32361 1115 aa9.08□□□□□ -0.96
SRP54YPR088C LCB2P40970 561 aa9.08□□□□□ -0.96
SRP54YPR088C STU2P46675 888 aa9.08□□□□□ -0.96
SRP54YPR088C PSP2P50109 593 aaKnown RBP9.08□□□□□ -0.96
SRP54YPR088C RTT102P53330 157 aa9.08□□□□□ -0.96
SRP54YPR088C DUS1P53759 423 aaKnown RBP9.08□□□□□ -0.96
SRP54YPR088C RLP24Q07915 199 aaKnown RBP9.08□□□□□ -0.96
SRP54YPR088C ICL2Q12031 575 aa9.08□□□□□ -0.96
SRP54YPR088C SWI6P09959 803 aa9.07□□□□□ -0.96
SRP54YPR088C KIN82P25341 720 aa9.07□□□□□ -0.96
SRP54YPR088C EFT1P32324 842 aaKnown RBP9.07□□□□□ -0.96
SRP54YPR088C EAF5P39995 279 aa9.07□□□□□ -0.96
SRP54YPR088C FIG4P42837 879 aa9.07□□□□□ -0.96
SRP54YPR088C COS5P47187 383 aa9.07□□□□□ -0.96
SRP54YPR088C IES4Q08561 116 aa9.07□□□□□ -0.96
SRP54YPR088C OSW2Q12202 724 aa9.07□□□□□ -0.96
SRP54YPR088C CHS2P14180 963 aa9.06□□□□□ -0.96
SRP54YPR088C UBC1P21734 215 aaKnown RBP9.06□□□□□ -0.96
SRP54YPR088C KTR2P33550 425 aa9.06□□□□□ -0.96
SRP54YPR088C FLR1P38124 548 aa9.06□□□□□ -0.96
SRP54YPR088C ALF1P53904 254 aa9.06□□□□□ -0.96
SRP54YPR088C UME1Q03010 460 aa9.06□□□□□ -0.96
SRP54YPR088C DON1Q05610 365 aa9.06□□□□□ -0.96
SRP54YPR088C VPS38Q05919 439 aa9.06□□□□□ -0.96
SRP54YPR088C MLH2Q07980 695 aa9.06□□□□□ -0.96
SRP54YPR088C NEW1Q08972 1196 aaKnown RBP9.06□□□□□ -0.96
SRP54YPR088C CDC53Q12018 815 aaKnown RBP9.06□□□□□ -0.96
SRP54YPR088C MAS2P11914 482 aa9.05□□□□□ -0.96
SRP54YPR088C SSD1P24276 1250 aaKnown RBP RIP-Chip data9.05□□□□□ -0.96not detected
SRP54YPR088C PCH2P38126 564 aa9.05□□□□□ -0.96
SRP54YPR088C YAP5P40574 245 aa9.05□□□□□ -0.96
SRP54YPR088C OSW7P43611 510 aa9.05□□□□□ -0.96
SRP54YPR088C NCS6P53088 359 aa9.05□□□□□ -0.96
SRP54YPR088C TIM8P57744 87 aa9.05□□□□□ -0.96
SRP54YPR088C YML020WQ03722 664 aa9.05□□□□□ -0.96
SRP54YPR088C SPO12P17123 173 aa9.05□□□□□ -0.96
SRP54YPR088C RRP43P25359 394 aaPredicted RBP9.05□□□□□ -0.96
SRP54YPR088C GPT2P36148 743 aa9.05□□□□□ -0.96
SRP54YPR088C KSP1P38691 1029 aaKnown RBP9.05□□□□□ -0.96
SRP54YPR088C JSN1P47135 1091 aaKnown RBP RIP-Chip data9.05□□□□□ -0.96not detected
SRP54YPR088C YNL146WP53906 100 aa9.05□□□□□ -0.96
SRP54YPR088C ERG5P54781 538 aa9.05□□□□□ -0.96
SRP54YPR088C VTC3Q02725 835 aa9.05□□□□□ -0.96
SRP54YPR088C YLR297WQ05899 129 aa9.05□□□□□ -0.96
SRP54YPR088C HIF1Q12373 385 aa9.05□□□□□ -0.96
SRP54YPR088C PPR1P07272 904 aaPredicted RBP9.04□□□□□ -0.96
SRP54YPR088C DBP1P24784 617 aaKnown RBP9.04□□□□□ -0.96
SRP54YPR088C DPH2P32461 534 aa9.04□□□□□ -0.96
SRP54YPR088C MUD1P32605 298 aaKnown RBP9.04□□□□□ -0.96
SRP54YPR088C SMY2P32909 740 aaKnown RBP9.04□□□□□ -0.96
Retrieved 100 of 5,963 RNA–protein pairs in 35.7 ms