RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	HFD1	Q04458	532 aa		4.26	□□□□□ -1.73
NUP85	YJR042W	TMA46	Q12000	345 aa	Known RBP	4.26	□□□□□ -1.73
NUP85	YJR042W	PGA3	Q12746	312 aa	Known RBP	4.26	□□□□□ -1.73
NUP85	YJR042W	LTE1	P07866	1435 aa		4.26	□□□□□ -1.73
NUP85	YJR042W	QCR6	P00127	147 aa		4.25	□□□□□ -1.73
NUP85	YJR042W	SRD1	P09007	221 aa		4.25	□□□□□ -1.73
NUP85	YJR042W	LYP1	P32487	611 aa		4.25	□□□□□ -1.73
NUP85	YJR042W	PTH2	P34222	208 aa		4.25	□□□□□ -1.73
NUP85	YJR042W	TPA1	P40032	644 aa	Known RBP	4.25	□□□□□ -1.73
NUP85	YJR042W	YGL140C	P53120	1219 aa		4.25	□□□□□ -1.73
NUP85	YJR042W	MSH6	Q03834	1242 aa		4.25	□□□□□ -1.73
NUP85	YJR042W	TAF11	Q04226	346 aa		4.25	□□□□□ -1.73
NUP85	YJR042W	VTI1	Q04338	217 aa		4.25	□□□□□ -1.73
NUP85	YJR042W	TSR2	Q06672	205 aa	Known RBP	4.25	□□□□□ -1.73
NUP85	YJR042W	NBA1	Q08229	501 aa	Known RBP	4.25	□□□□□ -1.73
NUP85	YJR042W	PGC1	Q08959	321 aa		4.25	□□□□□ -1.73
NUP85	YJR042W	GFA1	P14742	717 aa	Known RBP	4.25	□□□□□ -1.73
NUP85	YJR042W	POL4	P25615	582 aa		4.25	□□□□□ -1.73
NUP85	YJR042W	SPC29	P33419	253 aa		4.25	□□□□□ -1.73
NUP85	YJR042W	IRS4	P36115	615 aa	Known RBP	4.25	□□□□□ -1.73
NUP85	YJR042W	RDH54	P38086	958 aa		4.25	□□□□□ -1.73
NUP85	YJR042W	HXT10	P43581	546 aa		4.25	□□□□□ -1.73
NUP85	YJR042W	SAP155	P43612	1002 aa		4.25	□□□□□ -1.73
NUP85	YJR042W	NSE5	Q03718	556 aa		4.25	□□□□□ -1.73
NUP85	YJR042W	ISU2	Q12056	156 aa		4.25	□□□□□ -1.73
NUP85	YJR042W	NCR1	Q12200	1170 aa		4.25	□□□□□ -1.73
NUP85	YJR042W	RAV1	P47104	1357 aa		4.25	□□□□□ -1.73
NUP85	YJR042W	RGP1	P16664	663 aa		4.24	□□□□□ -1.73
NUP85	YJR042W	RAD53	P22216	821 aa		4.24	□□□□□ -1.73
NUP85	YJR042W	TPD3	P31383	635 aa		4.24	□□□□□ -1.73
NUP85	YJR042W	SER1	P33330	395 aa	Known RBP	4.24	□□□□□ -1.73
NUP85	YJR042W	MUD2	P36084	527 aa	Known RBP	4.24	□□□□□ -1.73
NUP85	YJR042W	CCT3	P39077	534 aa	Known RBP	4.24	□□□□□ -1.73
NUP85	YJR042W	CAJ1	P39101	391 aa		4.24	□□□□□ -1.73
NUP85	YJR042W	DSS1	P39112	969 aa		4.24	□□□□□ -1.73
NUP85	YJR042W	TIM11	P81449	96 aa	Predicted RBP	4.24	□□□□□ -1.73
NUP85	YJR042W	LCB5	Q06147	687 aa	Known RBP	4.24	□□□□□ -1.73
NUP85	YJR042W	BNR1	P40450	1375 aa		4.24	□□□□□ -1.73
NUP85	YJR042W	RTC1	Q08281	1341 aa		4.23	□□□□□ -1.73
NUP85	YJR042W	MOD5	P07884	428 aa		4.23	□□□□□ -1.73
NUP85	YJR042W	MSM1	P22438	575 aa		4.23	□□□□□ -1.73
NUP85	YJR042W	SCT1	P32784	759 aa		4.23	□□□□□ -1.73
NUP85	YJR042W	PTC4	P38089	393 aa		4.23	□□□□□ -1.73
NUP85	YJR042W	RRD1	P40454	393 aa	Known RBP	4.23	□□□□□ -1.73
NUP85	YJR042W	SSL2	Q00578	843 aa		4.23	□□□□□ -1.73
NUP85	YJR042W	BUD20	Q08004	166 aa	Predicted RBP	4.23	□□□□□ -1.73
NUP85	YJR042W	NUP188	P52593	1655 aa	Known RBP	4.23	□□□□□ -1.73
NUP85	YJR042W	BI4	P03879	638 aa		4.23	□□□□□ -1.73
NUP85	YJR042W	ILS1	P09436	1072 aa	Known RBP	4.23	□□□□□ -1.73
NUP85	YJR042W	MSD1	P15179	658 aa	Known RBP	4.23	□□□□□ -1.73
NUP85	YJR042W	SFL1	P20134	766 aa		4.23	□□□□□ -1.73
NUP85	YJR042W	IRE1	P32361	1115 aa		4.23	□□□□□ -1.73
NUP85	YJR042W	BSD2	P38356	321 aa		4.23	□□□□□ -1.73
NUP85	YJR042W	GEM1	P39722	662 aa		4.23	□□□□□ -1.73
NUP85	YJR042W	UBP6	P43593	499 aa	Known RBP	4.23	□□□□□ -1.73
NUP85	YJR042W	SUM1	P46676	1062 aa		4.23	□□□□□ -1.73
NUP85	YJR042W	PCL10	P53124	433 aa		4.23	□□□□□ -1.73
NUP85	YJR042W	KXD1	P53158	218 aa		4.23	□□□□□ -1.73
NUP85	YJR042W	NMA111	P53920	997 aa		4.23	□□□□□ -1.73
NUP85	YJR042W	TIM10	P87108	93 aa		4.23	□□□□□ -1.73
NUP85	YJR042W	TIF35	Q04067	274 aa	Known RBP	4.23	□□□□□ -1.73
NUP85	YJR042W	TFC6	Q06339	672 aa		4.23	□□□□□ -1.73
NUP85	YJR042W	YDL124W	Q07551	312 aa	Known RBP	4.23	□□□□□ -1.73
NUP85	YJR042W	DPH6	Q12429	685 aa		4.23	□□□□□ -1.73
NUP85	YJR042W	MCM1	P11746	286 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	AAC3	P18238	307 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	AEP2	P22136	580 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	PET309	P32522	965 aa	Predicted RBP	4.22	□□□□□ -1.73
NUP85	YJR042W	SMY2	P32909	740 aa	Known RBP	4.22	□□□□□ -1.73
NUP85	YJR042W	YBR284W	P38150	797 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	PCM1	P38628	557 aa	Known RBP	4.22	□□□□□ -1.73
NUP85	YJR042W	RIM4	P38741	713 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	RRF1	P38771	230 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	LRP1	P38801	184 aa	Known RBP	4.22	□□□□□ -1.73
NUP85	YJR042W	SIP5	P40210	489 aa	Known RBP	4.22	□□□□□ -1.73
NUP85	YJR042W	ROG3	P43602	733 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	RET2	P43621	546 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	SIW14	P53965	281 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	ISU1	Q03020	165 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	ECM38	Q05902	660 aa	Predicted RBP	4.22	□□□□□ -1.73
NUP85	YJR042W	RSC58	Q07979	502 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	DOP1	Q03921	1698 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	INO1	P11986	533 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	IDI1	P15496	288 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	RAD16	P31244	790 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	AFR1	P33304	620 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	SCD5	P34758	872 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	YKL133C	P36066	463 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	ERT1	P38140	529 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	TMA108	P40462	946 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	GPD2	P41911	440 aa	Known RBP	4.22	□□□□□ -1.73
NUP85	YJR042W	YNL035C	P53962	389 aa	Known RBP	4.22	□□□□□ -1.73
NUP85	YJR042W	ROD1	Q02805	837 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	HOT1	Q03213	719 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	YKU80	Q04437	629 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	YDR338C	Q05497	695 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	EMG1	Q06287	252 aa	Known RBP	4.22	□□□□□ -1.73
NUP85	YJR042W	HSP42	Q12329	375 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	VMR1	P38735	1592 aa		4.22	□□□□□ -1.73
NUP85	YJR042W	MLP1	Q02455	1875 aa	Known RBP	4.21	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 44.2 ms