RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W CBF2P32504 956 aa8.63□□□□□ -1.03
UFD1YGR048W ATO2P32907 282 aa8.63□□□□□ -1.03
UFD1YGR048W BUD2P33314 1104 aa8.63□□□□□ -1.03
UFD1YGR048W AIM21P40563 679 aa8.63□□□□□ -1.03
UFD1YGR048W MAD1P40957 749 aa8.63□□□□□ -1.03
UFD1YGR048W UFD2P54860 961 aa8.63□□□□□ -1.03
UFD1YGR048W MGR3Q04472 501 aa8.63□□□□□ -1.03
UFD1YGR048W ERB1Q04660 807 aaKnown RBP8.63□□□□□ -1.03
UFD1YGR048W MRD1Q06106 887 aaKnown RBP8.63□□□□□ -1.03
UFD1YGR048W UTP10P42945 1769 aaKnown RBP8.63□□□□□ -1.03
UFD1YGR048W APC1P53886 1748 aa8.63□□□□□ -1.03
UFD1YGR048W PIF1P07271 859 aa8.62□□□□□ -1.03
UFD1YGR048W HSP78P33416 811 aa8.62□□□□□ -1.03
UFD1YGR048W KES1P35844 434 aaKnown RBP8.62□□□□□ -1.03
UFD1YGR048W BUB1P41695 1021 aaKnown RBP RIP-Chip data8.62□□□□□ -1.03not detected
UFD1YGR048W SEC27P41811 889 aaKnown RBP8.62□□□□□ -1.03
UFD1YGR048W COP1P53622 1201 aaKnown RBP8.62□□□□□ -1.03
UFD1YGR048W FAR11P53917 953 aa8.62□□□□□ -1.03
UFD1YGR048W VPS16Q03308 798 aa8.62□□□□□ -1.03
UFD1YGR048W RMD1Q03441 430 aa8.62□□□□□ -1.03
UFD1YGR048W MSH6Q03834 1242 aa8.62□□□□□ -1.03
UFD1YGR048W SXM1Q04175 944 aaKnown RBP8.62□□□□□ -1.03
UFD1YGR048W YMR111CQ04461 462 aaPredicted RBP8.62□□□□□ -1.03
UFD1YGR048W GPR1Q12361 961 aa8.62□□□□□ -1.03
UFD1YGR048W BRR1Q99177 341 aaPredicted RBP8.62□□□□□ -1.03
UFD1YGR048W CDC4P07834 779 aa8.61□□□□□ -1.03
UFD1YGR048W LPD1P09624 499 aaKnown RBP8.61□□□□□ -1.03
UFD1YGR048W SRB4P32569 687 aa8.61□□□□□ -1.03
UFD1YGR048W YKL091CP33324 310 aaKnown RBP8.61□□□□□ -1.03
UFD1YGR048W STE13P33894 931 aa8.61□□□□□ -1.03
UFD1YGR048W TEL2P53038 688 aa8.61□□□□□ -1.03
UFD1YGR048W ESF2P53743 316 aaKnown RBP8.61□□□□□ -1.03
UFD1YGR048W SQS1P53866 767 aaKnown RBP8.61□□□□□ -1.03
UFD1YGR048W GIR2Q03768 265 aaPredicted RBP8.61□□□□□ -1.03
UFD1YGR048W CWC15Q03772 175 aaKnown RBP8.61□□□□□ -1.03
UFD1YGR048W NOP12Q08208 459 aaKnown RBP8.61□□□□□ -1.03
UFD1YGR048W LEU2P04173 364 aaPredicted RBP8.6□□□□□ -1.03
UFD1YGR048W RPL22AP05749 121 aaKnown RBP8.6□□□□□ -1.03
UFD1YGR048W ITR2P30606 609 aa8.6□□□□□ -1.03
UFD1YGR048W RAD24P32641 659 aa8.6□□□□□ -1.03
UFD1YGR048W LAS1P36146 502 aaPredicted RBP8.6□□□□□ -1.03
UFD1YGR048W FES1P38260 290 aa8.6□□□□□ -1.03
UFD1YGR048W YLF2P38746 405 aa8.6□□□□□ -1.03
UFD1YGR048W TDA3P38758 523 aa8.6□□□□□ -1.03
UFD1YGR048W SPC72P39723 622 aa8.6□□□□□ -1.03
UFD1YGR048W HOP2P53187 214 aa8.6□□□□□ -1.03
UFD1YGR048W MDR1P53258 950 aa8.6□□□□□ -1.03
UFD1YGR048W SDA1P53313 767 aaKnown RBP8.6□□□□□ -1.03
UFD1YGR048W ERG5P54781 538 aa8.6□□□□□ -1.03
UFD1YGR048W CIK1Q01649 594 aa8.6□□□□□ -1.03
UFD1YGR048W NGL3Q03210 505 aa8.6□□□□□ -1.03
UFD1YGR048W RSM24Q03976 319 aa8.6□□□□□ -1.03
UFD1YGR048W PPM1Q04081 328 aa8.6□□□□□ -1.03
UFD1YGR048W HCR1Q05775 265 aaKnown RBP8.6□□□□□ -1.03
UFD1YGR048W ATG17Q06410 417 aa8.6□□□□□ -1.03
UFD1YGR048W TSR2Q06672 205 aaKnown RBP8.6□□□□□ -1.03
UFD1YGR048W BRE1Q07457 700 aaKnown RBP8.6□□□□□ -1.03
UFD1YGR048W OSW1Q08692 278 aa8.6□□□□□ -1.03
UFD1YGR048W HMI1Q12039 706 aa8.6□□□□□ -1.03
UFD1YGR048W VIK1Q12045 647 aa8.6□□□□□ -1.03
UFD1YGR048W ENO2P00925 437 aaKnown RBP8.59□□□□□ -1.03
UFD1YGR048W HCA4P20448 770 aaKnown RBP8.59□□□□□ -1.03
UFD1YGR048W PAP1P29468 568 aaKnown RBP8.59□□□□□ -1.03
UFD1YGR048W SIN4P32259 974 aa8.59□□□□□ -1.03
UFD1YGR048W HIR2P32480 875 aa8.59□□□□□ -1.03
UFD1YGR048W KDX1P36005 433 aa8.59□□□□□ -1.03
UFD1YGR048W OAF3P36023 863 aa8.59□□□□□ -1.03
UFD1YGR048W ADE17P38009 592 aaKnown RBP8.59□□□□□ -1.03
UFD1YGR048W TBS1P38114 1094 aa8.59□□□□□ -1.03
UFD1YGR048W ECM21P38167 1117 aaKnown RBP8.59□□□□□ -1.03
UFD1YGR048W SSZ1P38788 538 aaKnown RBP8.59□□□□□ -1.03
UFD1YGR048W SAK1P38990 1142 aa8.59□□□□□ -1.03
UFD1YGR048W POL31P46957 487 aa8.59□□□□□ -1.03
UFD1YGR048W IMD4P50094 524 aaKnown RBP8.59□□□□□ -1.03
UFD1YGR048W UTP22P53254 1237 aaPredicted RBP8.59□□□□□ -1.03
UFD1YGR048W LSC1P53598 329 aaKnown RBP8.59□□□□□ -1.03
UFD1YGR048W HFD1Q04458 532 aa8.59□□□□□ -1.03
UFD1YGR048W MET32Q12041 191 aa8.59□□□□□ -1.03
UFD1YGR048W APC2Q12440 853 aa8.59□□□□□ -1.03
UFD1YGR048W ARG4P04076 463 aaPredicted RBP8.58□□□□□ -1.04
UFD1YGR048W MTF2P10849 440 aa8.58□□□□□ -1.04
UFD1YGR048W PGI1P12709 554 aaKnown RBP8.58□□□□□ -1.04
UFD1YGR048W SNA3P14359 133 aa8.58□□□□□ -1.04
UFD1YGR048W CKI1P20485 582 aa8.58□□□□□ -1.04
UFD1YGR048W VPS1P21576 704 aaKnown RBP8.58□□□□□ -1.04
UFD1YGR048W SEC65P29478 273 aa8.58□□□□□ -1.04
UFD1YGR048W MCM4P30665 933 aaKnown RBP8.58□□□□□ -1.04
UFD1YGR048W MVD1P32377 396 aaKnown RBP8.58□□□□□ -1.04
UFD1YGR048W AKL1P38080 1108 aaKnown RBP8.58□□□□□ -1.04
UFD1YGR048W CIC1P38779 376 aaKnown RBP8.58□□□□□ -1.04
UFD1YGR048W RSC30P38781 883 aa8.58□□□□□ -1.04
UFD1YGR048W UBP6P43593 499 aaKnown RBP8.58□□□□□ -1.04
UFD1YGR048W BRO1P48582 844 aa8.58□□□□□ -1.04
UFD1YGR048W MSN5P52918 1224 aa8.58□□□□□ -1.04
UFD1YGR048W ESBP6P53918 673 aa8.58□□□□□ -1.04
UFD1YGR048W GFD1Q04839 188 aaKnown RBP8.58□□□□□ -1.04
UFD1YGR048W HTZ1Q12692 134 aaKnown RBP8.58□□□□□ -1.04
UFD1YGR048W REP1P03871 373 aa8.57□□□□□ -1.04
UFD1YGR048W REC107P21651 314 aa8.57□□□□□ -1.04
UFD1YGR048W YCR051WP25631 222 aa8.57□□□□□ -1.04
Retrieved 100 of 5,963 RNA–protein pairs in 32.8 ms