RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	HLJ1	P48353	224 aa		6.18	□□□□□ -1.42
CAF16	YFL028C	CAT8	P39113	1433 aa		6.17	□□□□□ -1.42
CAF16	YFL028C	DOP1	Q03921	1698 aa		6.17	□□□□□ -1.42
CAF16	YFL028C	MEF1	P25039	761 aa		6.17	□□□□□ -1.42
CAF16	YFL028C	NNK1	P36003	928 aa		6.17	□□□□□ -1.42
CAF16	YFL028C	PET10	P36139	283 aa		6.17	□□□□□ -1.42
CAF16	YFL028C	YRO2	P38079	344 aa		6.17	□□□□□ -1.42
CAF16	YFL028C	ATG13	Q06628	738 aa		6.17	□□□□□ -1.42
CAF16	YFL028C	SMY2	P32909	740 aa	Known RBP	6.16	□□□□□ -1.42
CAF16	YFL028C	GPT2	P36148	743 aa		6.16	□□□□□ -1.42
CAF16	YFL028C	YJL045W	P47052	634 aa		6.16	□□□□□ -1.42
CAF16	YFL028C	RTS3	P53289	263 aa		6.16	□□□□□ -1.42
CAF16	YFL028C	HRK1	Q08732	759 aa	Known RBP	6.16	□□□□□ -1.42
CAF16	YFL028C	TRM3	Q07527	1436 aa		6.16	□□□□□ -1.42
CAF16	YFL028C	ARO1	P08566	1588 aa	Known RBP	6.15	□□□□□ -1.42
CAF16	YFL028C	BUD3	P25558	1636 aa		6.15	□□□□□ -1.42
CAF16	YFL028C	ADE8	P04161	214 aa		6.15	□□□□□ -1.42
CAF16	YFL028C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	6.15	□□□□□ -1.42	not detected
CAF16	YFL028C	RAD53	P22216	821 aa		6.15	□□□□□ -1.42
CAF16	YFL028C	SCT1	P32784	759 aa		6.15	□□□□□ -1.42
CAF16	YFL028C	SIT1	P39980	628 aa		6.15	□□□□□ -1.42
CAF16	YFL028C	SRP1	Q02821	542 aa	Known RBP	6.15	□□□□□ -1.42
CAF16	YFL028C	DNF2	Q12675	1612 aa		6.14	□□□□□ -1.43
CAF16	YFL028C	ERT1	P38140	529 aa		6.14	□□□□□ -1.43
CAF16	YFL028C	SAH1	P39954	449 aa	Known RBP	6.14	□□□□□ -1.43
CAF16	YFL028C	ALG2	P43636	503 aa		6.14	□□□□□ -1.43
CAF16	YFL028C	ATG36	P46983	293 aa		6.14	□□□□□ -1.43
CAF16	YFL028C	NCE103	P53615	221 aa		6.14	□□□□□ -1.43
CAF16	YFL028C	YNL193W	P53870	558 aa		6.14	□□□□□ -1.43
CAF16	YFL028C	TPP1	Q03796	238 aa		6.14	□□□□□ -1.43
CAF16	YFL028C	HPF1	Q05164	967 aa		6.14	□□□□□ -1.43
CAF16	YFL028C	YDL176W	Q12027	708 aa		6.14	□□□□□ -1.43
CAF16	YFL028C	MDM12	Q92328	271 aa		6.14	□□□□□ -1.43
CAF16	YFL028C	GSY1	P23337	708 aa		6.13	□□□□□ -1.43
CAF16	YFL028C	VBA3	P25594	458 aa		6.13	□□□□□ -1.43
CAF16	YFL028C	PRO1	P32264	428 aa		6.13	□□□□□ -1.43
CAF16	YFL028C	CDC12	P32468	407 aa	Known RBP	6.13	□□□□□ -1.43
CAF16	YFL028C	YFL054C	P43549	646 aa		6.13	□□□□□ -1.43
CAF16	YFL028C	LCD1	Q04377	747 aa		6.13	□□□□□ -1.43
CAF16	YFL028C	GAS5	Q08193	484 aa		6.13	□□□□□ -1.43
CAF16	YFL028C	ACM1	Q08981	209 aa		6.13	□□□□□ -1.43
CAF16	YFL028C	TY1A-NL1	Q12391	440 aa	Known RBP	6.13	□□□□□ -1.43
CAF16	YFL028C	DPH6	Q12429	685 aa		6.13	□□□□□ -1.43
CAF16	YFL028C	CHC1	P22137	1653 aa	Known RBP	6.12	□□□□□ -1.43
CAF16	YFL028C	GBP2	P25555	427 aa	Known RBP RIP-Chip data	6.12	□□□□□ -1.43	not detected
CAF16	YFL028C	UGA2	P38067	497 aa		6.12	□□□□□ -1.43
CAF16	YFL028C	BOI2	P39969	1040 aa		6.12	□□□□□ -1.43
CAF16	YFL028C	RPN3	P40016	523 aa	Known RBP	6.12	□□□□□ -1.43
CAF16	YFL028C	TOK1	P40310	691 aa		6.12	□□□□□ -1.43
CAF16	YFL028C	NUP145	P49687	1317 aa		6.12	□□□□□ -1.43
CAF16	YFL028C	YGR237C	P50089	785 aa		6.12	□□□□□ -1.43
CAF16	YFL028C	YNR014W	P53719	212 aa		6.12	□□□□□ -1.43
CAF16	YFL028C	HOS3	Q02959	697 aa	Known RBP	6.12	□□□□□ -1.43
CAF16	YFL028C	HRQ1	Q05549	1077 aa		6.12	□□□□□ -1.43
CAF16	YFL028C	PUS7	Q08647	676 aa	Known RBP	6.12	□□□□□ -1.43
CAF16	YFL028C	SLA2	P33338	968 aa		6.11	□□□□□ -1.43
CAF16	YFL028C	YGR035C	P53222	116 aa		6.11	□□□□□ -1.43
CAF16	YFL028C	SDA1	P53313	767 aa	Known RBP	6.11	□□□□□ -1.43
CAF16	YFL028C	SEC7	P11075	2009 aa	Known RBP	6.1	□□□□□ -1.43
CAF16	YFL028C	RPS4A	P0CX35	261 aa	Known RBP	6.1	□□□□□ -1.43
CAF16	YFL028C	RPS4B	P0CX36	261 aa	Known RBP	6.1	□□□□□ -1.43
CAF16	YFL028C	NPP1	P25353	742 aa		6.1	□□□□□ -1.43
CAF16	YFL028C	YSC84	P32793	468 aa		6.1	□□□□□ -1.43
CAF16	YFL028C	AFR1	P33304	620 aa		6.1	□□□□□ -1.43
CAF16	YFL028C	REC104	P33323	182 aa		6.1	□□□□□ -1.43
CAF16	YFL028C	PMT3	P47190	753 aa		6.1	□□□□□ -1.43
CAF16	YFL028C	TNA1	P53322	534 aa		6.1	□□□□□ -1.43
CAF16	YFL028C	BUL2	Q03758	920 aa	Known RBP	6.1	□□□□□ -1.43
CAF16	YFL028C	THI73	Q07904	523 aa		6.1	□□□□□ -1.43
CAF16	YFL028C	YSP2	Q06681	1438 aa		6.09	□□□□□ -1.43
CAF16	YFL028C	CDC9	P04819	755 aa		6.09	□□□□□ -1.43
CAF16	YFL028C	YKL151C	P36059	337 aa		6.09	□□□□□ -1.43
CAF16	YFL028C	GRX7	P38068	203 aa		6.09	□□□□□ -1.43
CAF16	YFL028C	SEC26	P41810	973 aa	Known RBP	6.09	□□□□□ -1.43
CAF16	YFL028C	SBE2	P42223	864 aa	Known RBP	6.09	□□□□□ -1.43
CAF16	YFL028C	ALT1	P52893	592 aa		6.09	□□□□□ -1.43
CAF16	YFL028C	FOL1	P53848	824 aa		6.09	□□□□□ -1.43
CAF16	YFL028C	MTC5	Q03897	1148 aa		6.09	□□□□□ -1.43
CAF16	YFL028C	RAD18	P10862	487 aa		6.08	□□□□□ -1.44
CAF16	YFL028C	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	6.08	□□□□□ -1.44	not detected
CAF16	YFL028C	SPC29	P33419	253 aa		6.08	□□□□□ -1.44
CAF16	YFL028C	GYP8	P43570	497 aa		6.08	□□□□□ -1.44
CAF16	YFL028C	ALO1	P54783	526 aa	Known RBP	6.08	□□□□□ -1.44
CAF16	YFL028C	UME1	Q03010	460 aa		6.08	□□□□□ -1.44
CAF16	YFL028C	EAR1	Q03212	550 aa		6.08	□□□□□ -1.44
CAF16	YFL028C	YLR001C	Q07895	862 aa		6.08	□□□□□ -1.44
CAF16	YFL028C	YOL057W	Q08225	711 aa		6.08	□□□□□ -1.44
CAF16	YFL028C	COQ4	O13525	335 aa		6.07	□□□□□ -1.44
CAF16	YFL028C	MDJ1	P35191	511 aa		6.07	□□□□□ -1.44
CAF16	YFL028C	CCM1	P48237	864 aa	Predicted RBP	6.07	□□□□□ -1.44
CAF16	YFL028C	TMA17	Q12513	150 aa		6.07	□□□□□ -1.44
CAF16	YFL028C	BI4	P03879	638 aa		6.06	□□□□□ -1.44
CAF16	YFL028C	THS1	P04801	734 aa	Known RBP	6.06	□□□□□ -1.44
CAF16	YFL028C	SRD1	P09007	221 aa		6.06	□□□□□ -1.44
CAF16	YFL028C	SNF5	P18480	905 aa		6.06	□□□□□ -1.44
CAF16	YFL028C	RSC6	P25632	483 aa		6.06	□□□□□ -1.44
CAF16	YFL028C	SFA1	P32771	386 aa		6.06	□□□□□ -1.44
CAF16	YFL028C	RCL1	Q08096	367 aa	Predicted RBP	6.06	□□□□□ -1.44
CAF16	YFL028C	FAP7	Q12055	197 aa	Predicted RBP	6.06	□□□□□ -1.44
CAF16	YFL028C	AI1	P03875	834 aa		6.05	□□□□□ -1.44

Retrieved 100 of 5,963 RNA–protein pairs in 151.9 ms