RNA–Protein interactions for RNA: YDL229W

SSB1, Transcript of Cytoplasmic ATPase that is a ribosome-associated molecular chaperone, yeast

Gene SSB1, Length 1,842 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSB1	YDL229W	BNA6	P43619	295 aa		4.64	□□□□□ -1.67
SSB1	YDL229W	NUP85	P46673	744 aa		4.64	□□□□□ -1.67
SSB1	YDL229W	TRF5	P48561	642 aa	Known RBP	4.64	□□□□□ -1.67
SSB1	YDL229W	RBL2	P48606	106 aa	Known RBP	4.64	□□□□□ -1.67
SSB1	YDL229W	BSC5	P53755	489 aa		4.64	□□□□□ -1.67
SSB1	YDL229W	RAT1	Q02792	1006 aa	Known RBP	4.64	□□□□□ -1.67
SSB1	YDL229W	YKU80	Q04437	629 aa		4.64	□□□□□ -1.67
SSB1	YDL229W	KAR5	Q04746	504 aa		4.64	□□□□□ -1.67
SSB1	YDL229W	VIP1	Q06685	1146 aa	Known RBP	4.64	□□□□□ -1.67
SSB1	YDL229W	ALR1	Q08269	859 aa		4.64	□□□□□ -1.67
SSB1	YDL229W	DRS2	P39524	1355 aa		4.64	□□□□□ -1.67
SSB1	YDL229W	TOM70	P07213	617 aa	Known RBP	4.63	□□□□□ -1.67
SSB1	YDL229W	CDC16	P09798	840 aa		4.63	□□□□□ -1.67
SSB1	YDL229W	ATE1	P16639	503 aa		4.63	□□□□□ -1.67
SSB1	YDL229W	TUP1	P16649	713 aa		4.63	□□□□□ -1.67
SSB1	YDL229W	ISY1	P21374	235 aa	Predicted RBP	4.63	□□□□□ -1.67
SSB1	YDL229W	MCM3	P24279	971 aa	Known RBP	4.63	□□□□□ -1.67
SSB1	YDL229W	YKL063C	P35725	167 aa		4.63	□□□□□ -1.67
SSB1	YDL229W	ATP3	P38077	311 aa	Known RBP	4.63	□□□□□ -1.67
SSB1	YDL229W	ALG14	P38242	237 aa		4.63	□□□□□ -1.67
SSB1	YDL229W	DYS1	P38791	387 aa		4.63	□□□□□ -1.67
SSB1	YDL229W	MVP1	P40959	511 aa	Known RBP	4.63	□□□□□ -1.67
SSB1	YDL229W	SBE2	P42223	864 aa	Known RBP	4.63	□□□□□ -1.67
SSB1	YDL229W	MDV1	P47025	714 aa		4.63	□□□□□ -1.67
SSB1	YDL229W	NIS1	P53939	407 aa		4.63	□□□□□ -1.67
SSB1	YDL229W	HAP5	Q02516	242 aa		4.63	□□□□□ -1.67
SSB1	YDL229W	SEN54	Q02825	467 aa	Predicted RBP	4.63	□□□□□ -1.67
SSB1	YDL229W	DPL1	Q05567	589 aa		4.63	□□□□□ -1.67
SSB1	YDL229W	SOG2	Q08817	791 aa		4.63	□□□□□ -1.67
SSB1	YDL229W	MAK21	Q12176	1025 aa	Known RBP	4.63	□□□□□ -1.67
SSB1	YDL229W	GPR1	Q12361	961 aa		4.63	□□□□□ -1.67
SSB1	YDL229W	PGK1	P00560	416 aa	Known RBP	4.62	□□□□□ -1.67
SSB1	YDL229W	ARD1	P07347	238 aa	Predicted RBP	4.62	□□□□□ -1.67
SSB1	YDL229W	ALG1	P16661	449 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	GLK1	P17709	500 aa	Known RBP	4.62	□□□□□ -1.67
SSB1	YDL229W	SUI2	P20459	304 aa	Known RBP	4.62	□□□□□ -1.67
SSB1	YDL229W	MEF1	P25039	761 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	MRC1	P25588	1096 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	MSH2	P25847	964 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	DPB3	P27344	201 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	HSE1	P38753	452 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	HAL5	P38970	855 aa	Known RBP	4.62	□□□□□ -1.67
SSB1	YDL229W	MTW1	P39731	289 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	ALB1	P47019	175 aa	Predicted RBP	4.62	□□□□□ -1.67
SSB1	YDL229W	LYS4	P49367	693 aa	Predicted RBP	4.62	□□□□□ -1.67
SSB1	YDL229W	NUP84	P52891	726 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	ATG1	P53104	897 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	COG2	P53271	262 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	TFB3	Q03290	321 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	PDS5	Q04264	1277 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	DYN3	Q04949	312 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	YOR289W	Q12012	251 aa	Predicted RBP	4.62	□□□□□ -1.67
SSB1	YDL229W	SMC6	Q12749	1114 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	NUP170	P38181	1502 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	NUP157	P40064	1391 aa	Known RBP	4.62	□□□□□ -1.67
SSB1	YDL229W	RAV1	P47104	1357 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	RED1	P14291	827 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	MEI4	P29467	408 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	ITR2	P30606	609 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	AFR1	P33304	620 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	MIF2	P35201	549 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	YKR018C	P36114	725 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	MNN2	P38069	597 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	YRO2	P38079	344 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	ALG3	P38179	458 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	FZO1	P38297	855 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	RGD1	P38339	666 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	YHI9	P38765	294 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	YAP1801	P38856	637 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	YER137C	P40083	148 aa	Known RBP	4.62	□□□□□ -1.67
SSB1	YDL229W	AGX1	P43567	385 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	RET2	P43621	546 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	YJL055W	P47044	245 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	NNF1	P47149	201 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	HST1	P53685	503 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	YNL108C	P53929	270 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	CST9	Q06032	482 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	CRN1	Q06440	651 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	NCR1	Q12200	1170 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	PHM7	Q12252	991 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	YBL113C	Q7M4S9	792 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	YRF1-1	P0CX20	1796 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	YRF1-5	P0CX21	1796 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	YRF1-8	P0CX22	1796 aa		4.62	□□□□□ -1.67
SSB1	YDL229W	ROM2	P51862	1356 aa	Known RBP	4.61	□□□□□ -1.67
SSB1	YDL229W	HSP60	P19882	572 aa	Known RBP	4.61	□□□□□ -1.67
SSB1	YDL229W	CLB4	P24871	460 aa		4.61	□□□□□ -1.67
SSB1	YDL229W	NPL6	P32832	435 aa		4.61	□□□□□ -1.67
SSB1	YDL229W	SSO1	P32867	290 aa		4.61	□□□□□ -1.67
SSB1	YDL229W	SEC28	P40509	296 aa	Known RBP	4.61	□□□□□ -1.67
SSB1	YDL229W	ALA1	P40825	983 aa	Known RBP	4.61	□□□□□ -1.67
SSB1	YDL229W	GCN20	P43535	752 aa	Known RBP	4.61	□□□□□ -1.67
SSB1	YDL229W	CTK3	P46963	296 aa	Predicted RBP	4.61	□□□□□ -1.67
SSB1	YDL229W	IMD4	P50094	524 aa	Known RBP	4.61	□□□□□ -1.67
SSB1	YDL229W	FMS1	P50264	508 aa		4.61	□□□□□ -1.67
SSB1	YDL229W	TIM50	Q02776	476 aa		4.61	□□□□□ -1.67
SSB1	YDL229W	SYO1	Q07395	620 aa		4.61	□□□□□ -1.67
SSB1	YDL229W	RVB2	Q12464	471 aa	Known RBP	4.61	□□□□□ -1.67
SSB1	YDL229W	YMR084W	A2P2R3	262 aa		4.6	□□□□□ -1.67
SSB1	YDL229W	PPG1	P32838	368 aa		4.6	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 11.2 ms