RNA–Protein interactions for RNA: LSR1

LSR1, Transcript of U2 spliceosomal RNA (U2 snRNA), component of the spliceosome, yeastyeast

Gene LSR1, Length 1,175 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LSR1LSR1 MTC3P53077 123 aa9.41□□□□□ -0.9
LSR1LSR1 KIN4Q01919 800 aa9.41□□□□□ -0.9
LSR1LSR1 STE23Q06010 1027 aa9.41□□□□□ -0.9
LSR1LSR1 OXR1Q08952 273 aa9.41□□□□□ -0.9
LSR1LSR1 SCP160P06105 1222 aaKnown RBP RIP-Chip data9.4□□□□□ -0.9not detected
LSR1LSR1 ICL1P28240 557 aaPredicted RBP9.4□□□□□ -0.9
LSR1LSR1 KAP114P53067 1004 aa9.4□□□□□ -0.9
LSR1LSR1 LSB1P53281 241 aa9.4□□□□□ -0.9
LSR1LSR1 TOF1P53840 1238 aa9.4□□□□□ -0.9
LSR1LSR1 ORC4P54791 529 aa9.4□□□□□ -0.9
LSR1LSR1 SEC5P89102 971 aa9.4□□□□□ -0.9
LSR1LSR1 OYE2Q03558 400 aaKnown RBP9.4□□□□□ -0.9
LSR1LSR1 UTP4Q06679 776 aaKnown RBP9.4□□□□□ -0.9
LSR1LSR1 MED1Q12321 566 aa9.4□□□□□ -0.9
LSR1LSR1 TRP2P00899 507 aaKnown RBP9.39□□□□□ -0.91
LSR1LSR1 ADP1P25371 1049 aa9.39□□□□□ -0.91
LSR1LSR1 NIP100P33420 868 aa9.39□□□□□ -0.91
LSR1LSR1 YEL1P34225 687 aa9.39□□□□□ -0.91
LSR1LSR1 SLD2P34252 453 aa9.39□□□□□ -0.91
LSR1LSR1 MCD4P36051 919 aa9.39□□□□□ -0.91
LSR1LSR1 YBL028CP38202 106 aa9.39□□□□□ -0.91
LSR1LSR1 TPS3P38426 1054 aaKnown RBP9.39□□□□□ -0.91
LSR1LSR1 TGL3P40308 642 aa9.39□□□□□ -0.91
LSR1LSR1 YFL034WP43564 1073 aa9.39□□□□□ -0.91
LSR1LSR1 YGR021WP53212 290 aa9.39□□□□□ -0.91
LSR1LSR1 ECI1Q05871 280 aa9.39□□□□□ -0.91
LSR1LSR1 YPL277CQ08989 487 aa9.39□□□□□ -0.91
LSR1LSR1 PYC1P11154 1178 aaKnown RBP9.38□□□□□ -0.91
LSR1LSR1 UGA4P32837 571 aa9.38□□□□□ -0.91
LSR1LSR1 RCK2P38623 610 aa9.38□□□□□ -0.91
LSR1LSR1 TIF4631P39935 952 aaKnown RBP9.38□□□□□ -0.91
LSR1LSR1 PXA1P41909 870 aa9.38□□□□□ -0.91
LSR1LSR1 FIG4P42837 879 aa9.38□□□□□ -0.91
LSR1LSR1 YNL320WP42840 284 aa9.38□□□□□ -0.91
LSR1LSR1 UTP14Q04500 899 aaKnown RBP9.38□□□□□ -0.91
LSR1LSR1 TUB2P02557 457 aaKnown RBP9.37□□□□□ -0.91
LSR1LSR1 PRP22P24384 1145 aaKnown RBP9.37□□□□□ -0.91
LSR1LSR1 PGM2P37012 569 aaKnown RBP9.37□□□□□ -0.91
LSR1LSR1 ULP2P40537 1034 aaPredicted RBP9.37□□□□□ -0.91
LSR1LSR1 EAF6P47128 113 aa9.37□□□□□ -0.91
LSR1LSR1 FMS1P50264 508 aa9.37□□□□□ -0.91
LSR1LSR1 YNL035CP53962 389 aaKnown RBP9.37□□□□□ -0.91
LSR1LSR1 YLR297WQ05899 129 aa9.37□□□□□ -0.91
LSR1LSR1 WHI4Q07655 649 aaKnown RBP9.37□□□□□ -0.91
LSR1LSR1 LAP2Q10740 671 aa9.37□□□□□ -0.91
LSR1LSR1 ARP6Q12509 438 aa9.37□□□□□ -0.91
LSR1LSR1 PHR1P05066 565 aaKnown RBP RIP-Chip data9.36□□□□□ -0.91not detected
LSR1LSR1 ARD1P07347 238 aaPredicted RBP9.36□□□□□ -0.91
LSR1LSR1 NAM7P30771 971 aaKnown RBP9.36□□□□□ -0.91
LSR1LSR1 SPP381P38282 291 aaPredicted RBP9.36□□□□□ -0.91
LSR1LSR1 HXT8P40886 569 aa9.36□□□□□ -0.91
LSR1LSR1 SNU71P53207 620 aaKnown RBP9.36□□□□□ -0.91
LSR1LSR1 DIP5P53388 608 aa9.36□□□□□ -0.91
LSR1LSR1 SYH1Q02875 849 aaKnown RBP9.36□□□□□ -0.91
LSR1LSR1 CSR1Q06705 408 aaKnown RBP9.36□□□□□ -0.91
LSR1LSR1 TSR1Q07381 788 aaKnown RBP9.36□□□□□ -0.91
LSR1LSR1 YPL225WQ08971 146 aaKnown RBP9.36□□□□□ -0.91
LSR1LSR1 RIO1Q12196 484 aaKnown RBP9.36□□□□□ -0.91
LSR1LSR1 ARG4P04076 463 aaPredicted RBP9.35□□□□□ -0.91
LSR1LSR1 PMA1P05030 918 aaKnown RBP9.35□□□□□ -0.91
LSR1LSR1 PCK1P10963 549 aa9.35□□□□□ -0.91
LSR1LSR1 PRP9P19736 530 aaKnown RBP9.35□□□□□ -0.91
LSR1LSR1 PWP2P25635 923 aaKnown RBP9.35□□□□□ -0.91
LSR1LSR1 MRF1P30775 413 aaPredicted RBP9.35□□□□□ -0.91
LSR1LSR1 SEC8P32855 1065 aa9.35□□□□□ -0.91
LSR1LSR1 YKL023WP36103 277 aaKnown RBP9.35□□□□□ -0.91
LSR1LSR1 KEL1P38853 1164 aaKnown RBP9.35□□□□□ -0.91
LSR1LSR1 LCB2P40970 561 aa9.35□□□□□ -0.91
LSR1LSR1 GPD2P41911 440 aaKnown RBP9.35□□□□□ -0.91
LSR1LSR1 YJR039WP47107 1121 aa9.35□□□□□ -0.91
LSR1LSR1 VID30P53076 958 aa9.35□□□□□ -0.91
LSR1LSR1 ARK1P53974 638 aa9.35□□□□□ -0.91
LSR1LSR1 APL5Q08951 932 aaKnown RBP9.35□□□□□ -0.91
LSR1LSR1 CTT1P06115 562 aa9.34□□□□□ -0.91
LSR1LSR1 ESS1P22696 170 aa9.34□□□□□ -0.91
LSR1LSR1 UBP11P36026 717 aa9.34□□□□□ -0.91
LSR1LSR1 STV1P37296 890 aa9.34□□□□□ -0.91
LSR1LSR1 VHR2P40041 505 aa9.34□□□□□ -0.91
LSR1LSR1 TRS85P46944 698 aa9.34□□□□□ -0.91
LSR1LSR1 RPC17P47076 161 aa9.34□□□□□ -0.91
LSR1LSR1 SGM1P47166 707 aa9.34□□□□□ -0.91
LSR1LSR1 ESBP6P53918 673 aa9.34□□□□□ -0.91
LSR1LSR1 GIR2Q03768 265 aaPredicted RBP9.34□□□□□ -0.91
LSR1LSR1 SDH5Q08230 162 aa9.34□□□□□ -0.91
LSR1LSR1 SPO21Q12411 609 aa9.34□□□□□ -0.91
LSR1LSR1 SRD1P09007 221 aa9.33□□□□□ -0.92
LSR1LSR1 SUP45P12385 437 aaKnown RBP9.33□□□□□ -0.92
LSR1LSR1 OLA1P38219 394 aaKnown RBP9.33□□□□□ -0.92
LSR1LSR1 VPS4P52917 437 aa9.33□□□□□ -0.92
LSR1LSR1 RIM8P53179 542 aa9.33□□□□□ -0.92
LSR1LSR1 ALD6P54115 500 aaKnown RBP9.33□□□□□ -0.92
LSR1LSR1 UBP3Q01477 912 aaKnown RBP RIP-Chip data9.33□□□□□ -0.92not detected
LSR1LSR1 EEB1Q02891 456 aa9.33□□□□□ -0.92
LSR1LSR1 YMR018WQ04364 514 aa9.33□□□□□ -0.92
LSR1LSR1 TDA9Q04545 1251 aa9.33□□□□□ -0.92
LSR1LSR1 YLR326WQ06170 240 aaKnown RBP9.33□□□□□ -0.92
LSR1LSR1 CUR1Q06469 252 aa9.33□□□□□ -0.92
LSR1LSR1 ZRT2Q12436 422 aa9.33□□□□□ -0.92
LSR1LSR1 CLN3P13365 580 aa9.32□□□□□ -0.92
LSR1LSR1 KRS1P15180 591 aaKnown RBP9.32□□□□□ -0.92
Retrieved 100 of 5,963 RNA–protein pairs in 49.6 ms