RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 MRPL50Q8N5N7 158 aaKnown RBP12.7□□□□□ -0.38
CCDC40-204ENST00000397545 ZSCAN31Q96LW9 406 aaPredicted RBP12.7□□□□□ -0.38
CCDC40-204ENST00000397545 AGLP35573 1532 aa12.69□□□□□ -0.38
CCDC40-204ENST00000397545 SDSP20132 328 aa12.69□□□□□ -0.38
CCDC40-204ENST00000397545 NUCB1Q02818 461 aa12.69□□□□□ -0.38
CCDC40-204ENST00000397545 MAPK8IP2Q13387 824 aaPredicted RBP12.69□□□□□ -0.38
CCDC40-204ENST00000397545 LRRC7Q96NW7 1537 aa12.69□□□□□ -0.38
CCDC40-204ENST00000397545 KLHL40Q2TBA0 621 aa12.69□□□□□ -0.38
CCDC40-204ENST00000397545 HCLS1P14317 486 aaPredicted RBP12.69□□□□□ -0.38
CCDC40-204ENST00000397545 CNNM1Q9NRU3 951 aa12.69□□□□□ -0.38
CCDC40-204ENST00000397545 HDAC1Q13547 482 aaPredicted RBP12.68□□□□□ -0.38
CCDC40-204ENST00000397545 CPS1P31327 1500 aa12.68□□□□□ -0.38
CCDC40-204ENST00000397545 CCDC158Q5M9N0 1113 aa12.68□□□□□ -0.38
CCDC40-204ENST00000397545 TTC39AQ5SRH9 613 aa12.68□□□□□ -0.38
CCDC40-204ENST00000397545 CEP57L1Q8IYX8 460 aa12.68□□□□□ -0.38
CCDC40-204ENST00000397545 TCEANC2Q96MN5 208 aa12.68□□□□□ -0.38
CCDC40-204ENST00000397545 NOL10Q9BSC4 688 aaKnown RBP12.68□□□□□ -0.38
CCDC40-204ENST00000397545 SPATA31D1Q6ZQQ2 1576 aa12.68□□□□□ -0.38
CCDC40-204ENST00000397545 FLIIQ13045 1269 aa12.68□□□□□ -0.38
CCDC40-204ENST00000397545 CCDC183Q5T5S1 534 aa12.68□□□□□ -0.38
CCDC40-204ENST00000397545 CFAP45Q9UL16 551 aa12.68□□□□□ -0.38
CCDC40-204ENST00000397545 FAM135BQ49AJ0 1406 aa12.68□□□□□ -0.38
CCDC40-204ENST00000397545 TTC22Q5TAA0 569 aa12.68□□□□□ -0.38
CCDC40-204ENST00000397545 SART3Q15020 963 aaKnown RBP12.67□□□□□ -0.38
CCDC40-204ENST00000397545 ZSCAN23Q3MJ62 389 aa12.67□□□□□ -0.38
CCDC40-204ENST00000397545 AMOTL1Q8IY63 956 aa12.67□□□□□ -0.38
CCDC40-204ENST00000397545 CAGE1Q8TC20 777 aa12.67□□□□□ -0.38
CCDC40-204ENST00000397545 NUP133Q8WUM0 1156 aa12.67□□□□□ -0.38
CCDC40-204ENST00000397545 TMX3Q96JJ7 454 aa12.67□□□□□ -0.38
CCDC40-204ENST00000397545 C16orf45Q96MC5 204 aaPredicted RBP12.67□□□□□ -0.38
CCDC40-204ENST00000397545 TRMT1Q9NXH9 659 aaKnown RBP12.67□□□□□ -0.38
CCDC40-204ENST00000397545 LIMCH1Q9UPQ0 1083 aa12.67□□□□□ -0.38
CCDC40-204ENST00000397545 MED14O60244 1454 aa12.67□□□□□ -0.38
CCDC40-204ENST00000397545 ERICH4A6NGS2 130 aa12.67□□□□□ -0.38
CCDC40-204ENST00000397545 TATP17735 454 aaPredicted RBP12.67□□□□□ -0.38
CCDC40-204ENST00000397545 USP19O94966 1318 aa12.67□□□□□ -0.38
CCDC40-204ENST00000397545 CPSF1Q10570 1443 aaKnown RBP12.67□□□□□ -0.38
CCDC40-204ENST00000397545 ADCY5O95622 1261 aa12.66□□□□□ -0.38
CCDC40-204ENST00000397545 GIMAP6Q6P9H5 292 aa12.66□□□□□ -0.38
CCDC40-204ENST00000397545 MPRIPQ6WCQ1 1025 aa12.66□□□□□ -0.38
CCDC40-204ENST00000397545 RUFY1Q96T51 708 aa12.66□□□□□ -0.38
CCDC40-204ENST00000397545 CEP126Q9P2H0 1117 aa12.66□□□□□ -0.38
CCDC40-204ENST00000397545 XBP1P17861 261 aa12.66□□□□□ -0.38
CCDC40-204ENST00000397545 JMYQ8N9B5 988 aa12.66□□□□□ -0.38
CCDC40-204ENST00000397545 CABP4P57796 275 aa12.66□□□□□ -0.38
CCDC40-204ENST00000397545 OFD1O75665 1012 aa12.65□□□□□ -0.38
CCDC40-204ENST00000397545 CLCN1P35523 988 aa12.65□□□□□ -0.38
CCDC40-204ENST00000397545 PIBF1Q8WXW3 757 aa12.65□□□□□ -0.38
CCDC40-204ENST00000397545 MAP3K19Q56UN5 1328 aa12.65□□□□□ -0.38
CCDC40-204ENST00000397545 PTCD1O75127 700 aaKnown RBP12.65□□□□□ -0.38
CCDC40-204ENST00000397545 KCNA6P17658 529 aa12.65□□□□□ -0.38
CCDC40-204ENST00000397545 CFAP100Q494V2 611 aa12.65□□□□□ -0.38
CCDC40-204ENST00000397545 FILIP1LQ4L180 1135 aa12.65□□□□□ -0.38
CCDC40-204ENST00000397545 CCDC82Q8N4S0 544 aa12.65□□□□□ -0.38
CCDC40-204ENST00000397545 NECAB1Q8N987 351 aa12.65□□□□□ -0.38
CCDC40-204ENST00000397545 BRMS1Q9HCU9 246 aa12.65□□□□□ -0.38
CCDC40-204ENST00000397545 STX6O43752 255 aa12.65□□□□□ -0.39
CCDC40-204ENST00000397545 CCDC57Q2TAC2 916 aa12.65□□□□□ -0.39
CCDC40-204ENST00000397545 PPP1R42Q7Z4L9 355 aa12.65□□□□□ -0.39
CCDC40-204ENST00000397545 ZGPATQ8N5A5 531 aaKnown RBP12.65□□□□□ -0.39
CCDC40-204ENST00000397545 JARID2Q92833 1246 aaPredicted RBP12.65□□□□□ -0.39
CCDC40-204ENST00000397545 ADGRB2O60241 1585 aa12.64□□□□□ -0.39
CCDC40-204ENST00000397545 ZBTB7BO15156 539 aaPredicted RBP12.64□□□□□ -0.39
CCDC40-204ENST00000397545 IDH1O75874 414 aaKnown RBP12.64□□□□□ -0.39
CCDC40-204ENST00000397545 CCT2P78371 535 aaKnown RBP12.64□□□□□ -0.39
CCDC40-204ENST00000397545 PRDM11Q9NQV5 511 aa12.64□□□□□ -0.39
CCDC40-204ENST00000397545 DLC1Q96QB1 1528 aa12.64□□□□□ -0.39
CCDC40-204ENST00000397545 PRIM1P49642 420 aaKnown RBP12.64□□□□□ -0.39
CCDC40-204ENST00000397545 SMC5Q8IY18 1101 aa12.64□□□□□ -0.39
CCDC40-204ENST00000397545 CCDC66A2RUB6 948 aa12.64□□□□□ -0.39
CCDC40-204ENST00000397545 SETQ01105 290 aaPredicted RBP12.64□□□□□ -0.39
CCDC40-204ENST00000397545 KLHL34Q8N239 644 aa12.64□□□□□ -0.39
CCDC40-204ENST00000397545 GJB2P29033 226 aa12.63□□□□□ -0.39
CCDC40-204ENST00000397545 KRT32Q14532 448 aa12.63□□□□□ -0.39
CCDC40-204ENST00000397545 DNAAF4Q8WXU2 420 aa12.63□□□□□ -0.39
CCDC40-204ENST00000397545 PI4KAP2A4QPH2 592 aa12.63□□□□□ -0.39
CCDC40-204ENST00000397545 SPDYE4A6NLX3 237 aa12.63□□□□□ -0.39
CCDC40-204ENST00000397545 BIN1O00499 593 aa12.63□□□□□ -0.39
CCDC40-204ENST00000397545 PTPN14Q15678 1187 aa12.63□□□□□ -0.39
CCDC40-204ENST00000397545 PI4KAP1Q8N8J0 262 aa12.63□□□□□ -0.39
CCDC40-204ENST00000397545 SIRT1Q96EB6 747 aa12.63□□□□□ -0.39
CCDC40-204ENST00000397545 SCAND2PQ9GZW5 306 aaPredicted RBP12.63□□□□□ -0.39
CCDC40-204ENST00000397545 ACBD3Q9H3P7 528 aa12.63□□□□□ -0.39
CCDC40-204ENST00000397545 MTHFSDQ2M296 383 aaKnown RBP12.63□□□□□ -0.39
CCDC40-204ENST00000397545 PDCL3Q9H2J4 239 aa12.63□□□□□ -0.39
CCDC40-204ENST00000397545 TTC12Q9H892 705 aaPredicted RBP12.63□□□□□ -0.39
CCDC40-204ENST00000397545 PLEKHG3A1L390 1219 aa12.62□□□□□ -0.39
CCDC40-204ENST00000397545 MAP2P11137 1827 aaKnown RBP12.62□□□□□ -0.39
CCDC40-204ENST00000397545 AXDND1Q5T1B0 1012 aaPredicted RBP12.62□□□□□ -0.39
CCDC40-204ENST00000397545 AATKQ6ZMQ8 1374 aa12.62□□□□□ -0.39
CCDC40-204ENST00000397545 PPFIBP1Q86W92 1011 aa12.62□□□□□ -0.39
CCDC40-204ENST00000397545 TRIM22Q8IYM9 498 aa12.62□□□□□ -0.39
CCDC40-204ENST00000397545 ZHX1Q9UKY1 873 aaPredicted RBP12.62□□□□□ -0.39
CCDC40-204ENST00000397545 ADAMTS13Q76LX8 1427 aa12.62□□□□□ -0.39
CCDC40-204ENST00000397545 UBAP1LF5GYI3 381 aa12.62□□□□□ -0.39
CCDC40-204ENST00000397545 DTNBO60941 627 aa12.62□□□□□ -0.39
CCDC40-204ENST00000397545 UBXN4Q92575 508 aa12.62□□□□□ -0.39
CCDC40-204ENST00000397545 RRAGDQ9NQL2 400 aaPredicted RBP12.62□□□□□ -0.39
CCDC40-204ENST00000397545 TNNT1P13805 278 aa12.62□□□□□ -0.39
CCDC40-204ENST00000397545 PDE1AP54750 535 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms