RNA–Protein interactions for RNA: YPL006W

NCR1, Transcript of Vacuolar membrane protein, yeast

Gene NCR1, Length 3,513 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NCR1	YPL006W	UBX2	Q04228	584 aa		4.29	□□□□□ -1.72
NCR1	YPL006W	YDL057W	Q07379	328 aa		4.29	□□□□□ -1.72
NCR1	YPL006W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.29	□□□□□ -1.72	not detected
NCR1	YPL006W	APL1	P27351	700 aa		4.29	□□□□□ -1.72
NCR1	YPL006W	TRK2	P28584	889 aa		4.29	□□□□□ -1.72
NCR1	YPL006W	SEC8	P32855	1065 aa		4.29	□□□□□ -1.72
NCR1	YPL006W	SWE1	P32944	819 aa		4.29	□□□□□ -1.72
NCR1	YPL006W	YNL320W	P42840	284 aa		4.29	□□□□□ -1.72
NCR1	YPL006W	ARG4	P04076	463 aa	Predicted RBP	4.29	□□□□□ -1.72
NCR1	YPL006W	RET1	P22276	1149 aa	Known RBP	4.29	□□□□□ -1.72
NCR1	YPL006W	MRX1	P40050	688 aa		4.29	□□□□□ -1.72
NCR1	YPL006W	EMP47	P43555	445 aa		4.29	□□□□□ -1.72
NCR1	YPL006W	BNI5	P53890	448 aa	Known RBP	4.29	□□□□□ -1.72
NCR1	YPL006W	FAL1	Q12099	399 aa	Known RBP	4.29	□□□□□ -1.72
NCR1	YPL006W	GSC2	P40989	1895 aa		4.28	□□□□□ -1.72
NCR1	YPL006W	SRM1	P21827	482 aa		4.28	□□□□□ -1.72
NCR1	YPL006W	PRE8	P23639	250 aa		4.28	□□□□□ -1.72
NCR1	YPL006W	PSE1	P32337	1089 aa	Known RBP	4.28	□□□□□ -1.72
NCR1	YPL006W	SAS3	P34218	831 aa		4.28	□□□□□ -1.72
NCR1	YPL006W	MCD4	P36051	919 aa		4.28	□□□□□ -1.72
NCR1	YPL006W	YJR039W	P47107	1121 aa		4.28	□□□□□ -1.72
NCR1	YPL006W	KAP114	P53067	1004 aa		4.28	□□□□□ -1.72
NCR1	YPL006W	FUS2	Q05670	677 aa		4.28	□□□□□ -1.72
NCR1	YPL006W	ECI1	Q05871	280 aa		4.28	□□□□□ -1.72
NCR1	YPL006W	XRS2	P33301	854 aa		4.28	□□□□□ -1.72
NCR1	YPL006W	ISW1	P38144	1129 aa		4.28	□□□□□ -1.72
NCR1	YPL006W	SPP381	P38282	291 aa	Predicted RBP	4.28	□□□□□ -1.72
NCR1	YPL006W	GAA1	P39012	614 aa		4.28	□□□□□ -1.72
NCR1	YPL006W	NUP82	P40368	713 aa		4.28	□□□□□ -1.72
NCR1	YPL006W	SDS3	P40505	327 aa		4.28	□□□□□ -1.72
NCR1	YPL006W	ROG3	P43602	733 aa		4.28	□□□□□ -1.72
NCR1	YPL006W	NBP1	P52919	319 aa	Predicted RBP	4.28	□□□□□ -1.72
NCR1	YPL006W	GUP1	P53154	560 aa		4.28	□□□□□ -1.72
NCR1	YPL006W	PUS6	P53294	404 aa		4.28	□□□□□ -1.72
NCR1	YPL006W	AIM33	Q04516	312 aa		4.28	□□□□□ -1.72
NCR1	YPL006W	IRC3	Q06683	689 aa		4.28	□□□□□ -1.72
NCR1	YPL006W	GAS5	Q08193	484 aa		4.28	□□□□□ -1.72
NCR1	YPL006W	SMC6	Q12749	1114 aa		4.28	□□□□□ -1.72
NCR1	YPL006W	TRP2	P00899	507 aa	Known RBP	4.28	□□□□□ -1.73
NCR1	YPL006W	PRP9	P19736	530 aa	Known RBP	4.28	□□□□□ -1.73
NCR1	YPL006W	PPS1	P38148	807 aa		4.28	□□□□□ -1.73
NCR1	YPL006W	PFF1	P38244	976 aa		4.28	□□□□□ -1.73
NCR1	YPL006W	RCK2	P38623	610 aa		4.28	□□□□□ -1.73
NCR1	YPL006W	ORC6	P38826	435 aa		4.28	□□□□□ -1.73
NCR1	YPL006W	YFL034W	P43564	1073 aa		4.28	□□□□□ -1.73
NCR1	YPL006W	YGR021W	P53212	290 aa		4.28	□□□□□ -1.73
NCR1	YPL006W	BUL2	Q03758	920 aa	Known RBP	4.28	□□□□□ -1.73
NCR1	YPL006W	UTP14	Q04500	899 aa	Known RBP	4.28	□□□□□ -1.73
NCR1	YPL006W	CSM3	Q04659	317 aa		4.28	□□□□□ -1.73
NCR1	YPL006W	YPR078C	Q06813	372 aa		4.28	□□□□□ -1.73
NCR1	YPL006W	PMR1	P13586	950 aa		4.27	□□□□□ -1.73
NCR1	YPL006W	PDB1	P32473	366 aa	Known RBP	4.27	□□□□□ -1.73
NCR1	YPL006W	SMC1	P32908	1225 aa		4.27	□□□□□ -1.73
NCR1	YPL006W	KTR2	P33550	425 aa		4.27	□□□□□ -1.73
NCR1	YPL006W	OAF3	P36023	863 aa		4.27	□□□□□ -1.73
NCR1	YPL006W	YGR273C	P53329	174 aa		4.27	□□□□□ -1.73
NCR1	YPL006W	VIP1	Q06685	1146 aa	Known RBP	4.27	□□□□□ -1.73
NCR1	YPL006W	APL5	Q08951	932 aa	Known RBP	4.27	□□□□□ -1.73
NCR1	YPL006W	RIO1	Q12196	484 aa	Known RBP	4.27	□□□□□ -1.73
NCR1	YPL006W	FLO11	P08640	1367 aa		4.27	□□□□□ -1.73
NCR1	YPL006W	CDC10	P25342	322 aa	Known RBP	4.27	□□□□□ -1.73
NCR1	YPL006W	RAM2	P29703	316 aa		4.27	□□□□□ -1.73
NCR1	YPL006W	SMY1	P32364	656 aa	Known RBP	4.27	□□□□□ -1.73
NCR1	YPL006W	BCH2	P36122	765 aa		4.27	□□□□□ -1.73
NCR1	YPL006W	TPS3	P38426	1054 aa	Known RBP	4.27	□□□□□ -1.73
NCR1	YPL006W	NMD5	P46970	1048 aa		4.27	□□□□□ -1.73
NCR1	YPL006W	TOF1	P53840	1238 aa		4.27	□□□□□ -1.73
NCR1	YPL006W	ERO1	Q03103	563 aa		4.27	□□□□□ -1.73
NCR1	YPL006W	USA1	Q03714	838 aa		4.27	□□□□□ -1.73
NCR1	YPL006W	NAM7	P30771	971 aa	Known RBP	4.26	□□□□□ -1.73
NCR1	YPL006W	JNM1	P36224	373 aa		4.26	□□□□□ -1.73
NCR1	YPL006W	GSM1	P42950	618 aa		4.26	□□□□□ -1.73
NCR1	YPL006W	BRE2	P43132	505 aa		4.26	□□□□□ -1.73
NCR1	YPL006W	MSN5	P52918	1224 aa		4.26	□□□□□ -1.73
NCR1	YPL006W	VPS72	Q03388	795 aa		4.26	□□□□□ -1.73
NCR1	YPL006W	SUE1	Q06524	206 aa		4.26	□□□□□ -1.73
NCR1	YPL006W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	4.26	□□□□□ -1.73	RIP-Chip
NCR1	YPL006W	ARG1	P22768	420 aa		4.26	□□□□□ -1.73
NCR1	YPL006W	GSY1	P23337	708 aa		4.26	□□□□□ -1.73
NCR1	YPL006W	SRO9	P25567	434 aa	Known RBP	4.26	□□□□□ -1.73
NCR1	YPL006W	YCR051W	P25631	222 aa		4.26	□□□□□ -1.73
NCR1	YPL006W	RPS7A	P26786	190 aa	Known RBP	4.26	□□□□□ -1.73
NCR1	YPL006W	OLA1	P38219	394 aa	Known RBP	4.26	□□□□□ -1.73
NCR1	YPL006W	PIH1	P38768	344 aa		4.26	□□□□□ -1.73
NCR1	YPL006W	CCT2	P39076	527 aa	Known RBP	4.26	□□□□□ -1.73
NCR1	YPL006W	PES4	P39684	611 aa		4.26	□□□□□ -1.73
NCR1	YPL006W	SMX2	P40204	77 aa	Known RBP	4.26	□□□□□ -1.73
NCR1	YPL006W	RIM8	P53179	542 aa		4.26	□□□□□ -1.73
NCR1	YPL006W	NCS2	P53923	493 aa	Predicted RBP	4.26	□□□□□ -1.73
NCR1	YPL006W	TAF9	Q05027	157 aa		4.26	□□□□□ -1.73
NCR1	YPL006W	PIG1	Q06216	648 aa		4.26	□□□□□ -1.73
NCR1	YPL006W	ZRT2	Q12436	422 aa		4.26	□□□□□ -1.73
NCR1	YPL006W	RIM101	P33400	625 aa		4.26	□□□□□ -1.73
NCR1	YPL006W	SIC1	P38634	284 aa		4.26	□□□□□ -1.73
NCR1	YPL006W	SIP3	P38717	1229 aa		4.26	□□□□□ -1.73
NCR1	YPL006W	PAN5	P38787	379 aa		4.26	□□□□□ -1.73
NCR1	YPL006W	RIX1	P38883	763 aa	Predicted RBP	4.26	□□□□□ -1.73
NCR1	YPL006W	FIG4	P42837	879 aa		4.26	□□□□□ -1.73
NCR1	YPL006W	RPC17	P47076	161 aa		4.26	□□□□□ -1.73
NCR1	YPL006W	HPC2	Q01448	625 aa		4.26	□□□□□ -1.73

Retrieved 100 of 5,963 RNA–protein pairs in 92.2 ms