RNA–Protein interactions for RNA: YOR340C

RPA43, Transcript of RNA polymerase I subunit A43, yeast

Gene RPA43, Length 981 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPA43	YOR340C	RPS4A	P0CX35	261 aa	Known RBP	4.79	□□□□□ -1.64
RPA43	YOR340C	RPS4B	P0CX36	261 aa	Known RBP	4.79	□□□□□ -1.64
RPA43	YOR340C	MSB1	P21339	1137 aa	Known RBP	4.79	□□□□□ -1.64
RPA43	YOR340C	MKK2	P32491	506 aa		4.79	□□□□□ -1.64
RPA43	YOR340C	HXT13	P39924	564 aa		4.79	□□□□□ -1.64
RPA43	YOR340C	VPS53	P47061	822 aa		4.79	□□□□□ -1.64
RPA43	YOR340C	HXT17	P53631	564 aa		4.79	□□□□□ -1.64
RPA43	YOR340C	HXT15	P54854	567 aa		4.79	□□□□□ -1.64
RPA43	YOR340C	GDE1	Q02979	1223 aa		4.79	□□□□□ -1.64
RPA43	YOR340C	RSA3	Q05942	220 aa	Known RBP	4.79	□□□□□ -1.64
RPA43	YOR340C	YLR257W	Q06146	321 aa	Known RBP	4.79	□□□□□ -1.64
RPA43	YOR340C	FPR4	Q06205	392 aa	Predicted RBP	4.79	□□□□□ -1.64
RPA43	YOR340C	YOL098C	Q12496	1037 aa		4.79	□□□□□ -1.64
RPA43	YOR340C	PTC5	Q12511	572 aa		4.79	□□□□□ -1.64
RPA43	YOR340C	HAP1	P0CE41	1502 aa		4.78	□□□□□ -1.64
RPA43	YOR340C	RET1	P22276	1149 aa	Known RBP	4.78	□□□□□ -1.64
RPA43	YOR340C	SYP1	P25623	870 aa	Known RBP	4.78	□□□□□ -1.64
RPA43	YOR340C	AFG2	P32794	780 aa		4.78	□□□□□ -1.64
RPA43	YOR340C	DUT1	P33317	147 aa		4.78	□□□□□ -1.64
RPA43	YOR340C	WHI3	P34761	661 aa	Known RBP	4.78	□□□□□ -1.64
RPA43	YOR340C	ALG3	P38179	458 aa		4.78	□□□□□ -1.64
RPA43	YOR340C	CIT3	P43635	486 aa		4.78	□□□□□ -1.64
RPA43	YOR340C	ALT1	P52893	592 aa		4.78	□□□□□ -1.64
RPA43	YOR340C	RAT1	Q02792	1006 aa	Known RBP	4.78	□□□□□ -1.64
RPA43	YOR340C	HRK1	Q08732	759 aa	Known RBP	4.78	□□□□□ -1.64
RPA43	YOR340C	SSF2	Q12153	453 aa	Predicted RBP	4.78	□□□□□ -1.64
RPA43	YOR340C	SEA4	P38164	1038 aa		4.77	□□□□□ -1.65
RPA43	YOR340C	QNS1	P38795	714 aa	Known RBP	4.77	□□□□□ -1.65
RPA43	YOR340C	NMD3	P38861	518 aa	Known RBP	4.77	□□□□□ -1.65
RPA43	YOR340C	FAA4	P47912	694 aa	Known RBP	4.77	□□□□□ -1.65
RPA43	YOR340C	TPP1	Q03796	238 aa		4.77	□□□□□ -1.65
RPA43	YOR340C	NSI1	Q12457	570 aa		4.77	□□□□□ -1.65
RPA43	YOR340C	TRP2	P00899	507 aa	Known RBP	4.76	□□□□□ -1.65
RPA43	YOR340C	GCD1	P09032	578 aa	Predicted RBP	4.76	□□□□□ -1.65
RPA43	YOR340C	RER2	P35196	286 aa		4.76	□□□□□ -1.65
RPA43	YOR340C	CNN1	P43618	361 aa		4.76	□□□□□ -1.65
RPA43	YOR340C	URN1	Q06525	465 aa	Known RBP	4.76	□□□□□ -1.65
RPA43	YOR340C	YOR059C	Q08448	450 aa	Known RBP	4.76	□□□□□ -1.65
RPA43	YOR340C	PUS7	Q08647	676 aa	Known RBP	4.76	□□□□□ -1.65
RPA43	YOR340C	WRS1	Q12109	432 aa	Known RBP	4.76	□□□□□ -1.65
RPA43	YOR340C	TY1B-NL2	Q99337	1749 aa	Known RBP	4.76	□□□□□ -1.65
RPA43	YOR340C	DBP5	P20449	482 aa	Known RBP	4.75	□□□□□ -1.65
RPA43	YOR340C	LYP1	P32487	611 aa		4.75	□□□□□ -1.65
RPA43	YOR340C	MCM7	P38132	845 aa		4.75	□□□□□ -1.65
RPA43	YOR340C	TYW3	P53177	273 aa		4.75	□□□□□ -1.65
RPA43	YOR340C	SDH1	Q00711	640 aa		4.75	□□□□□ -1.65
RPA43	YOR340C	EEB1	Q02891	456 aa		4.75	□□□□□ -1.65
RPA43	YOR340C	EAR1	Q03212	550 aa		4.75	□□□□□ -1.65
RPA43	YOR340C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.75	□□□□□ -1.65	not detected
RPA43	YOR340C	SPO20	Q04359	397 aa		4.75	□□□□□ -1.65
RPA43	YOR340C	FAL1	Q12099	399 aa	Known RBP	4.75	□□□□□ -1.65
RPA43	YOR340C	NUP192	P47054	1683 aa		4.74	□□□□□ -1.65
RPA43	YOR340C	RGD1	P38339	666 aa		4.74	□□□□□ -1.65
RPA43	YOR340C	IOC3	P43596	787 aa		4.74	□□□□□ -1.65
RPA43	YOR340C	YJL045W	P47052	634 aa		4.74	□□□□□ -1.65
RPA43	YOR340C	HNT2	P49775	206 aa		4.74	□□□□□ -1.65
RPA43	YOR340C	RCM1	P53972	490 aa		4.74	□□□□□ -1.65
RPA43	YOR340C	KIP1	P28742	1111 aa		4.73	□□□□□ -1.65
RPA43	YOR340C	GPB2	P39717	880 aa		4.73	□□□□□ -1.65
RPA43	YOR340C	KRI1	P42846	591 aa	Known RBP	4.73	□□□□□ -1.65
RPA43	YOR340C	YJL049W	P47048	450 aa		4.73	□□□□□ -1.65
RPA43	YOR340C	YGR053C	P53234	283 aa		4.73	□□□□□ -1.65
RPA43	YOR340C	TIF35	Q04067	274 aa	Known RBP	4.73	□□□□□ -1.65
RPA43	YOR340C	YPL260W	Q08977	551 aa		4.73	□□□□□ -1.65
RPA43	YOR340C	YVC1	Q12324	675 aa		4.73	□□□□□ -1.65
RPA43	YOR340C	SPO21	Q12411	609 aa		4.73	□□□□□ -1.65
RPA43	YOR340C	INO1	P11986	533 aa		4.72	□□□□□ -1.65
RPA43	YOR340C	PRI2	P20457	528 aa		4.72	□□□□□ -1.65
RPA43	YOR340C	BAS1	P22035	811 aa		4.72	□□□□□ -1.65
RPA43	YOR340C	MLS1	P30952	554 aa		4.72	□□□□□ -1.65
RPA43	YOR340C	SRP40	P32583	406 aa	Predicted RBP	4.72	□□□□□ -1.65
RPA43	YOR340C	MOT2	P34909	587 aa	Known RBP	4.72	□□□□□ -1.65
RPA43	YOR340C	YHL012W	P38709	493 aa		4.72	□□□□□ -1.65
RPA43	YOR340C	UBP5	P39944	805 aa		4.72	□□□□□ -1.65
RPA43	YOR340C	NSE3	Q05541	303 aa		4.72	□□□□□ -1.65
RPA43	YOR340C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	4.71	□□□□□ -1.66	RIP-Chip
RPA43	YOR340C	YKL091C	P33324	310 aa	Known RBP	4.71	□□□□□ -1.66
RPA43	YOR340C	COQ4	O13525	335 aa		4.7	□□□□□ -1.66
RPA43	YOR340C	YSC84	P32793	468 aa		4.7	□□□□□ -1.66
RPA43	YOR340C	YKL107W	P34251	309 aa		4.7	□□□□□ -1.66
RPA43	YOR340C	BRN1	P38170	754 aa		4.7	□□□□□ -1.66
RPA43	YOR340C	SNF7	P39929	240 aa	Known RBP	4.7	□□□□□ -1.66
RPA43	YOR340C	NIT1	P40447	199 aa		4.7	□□□□□ -1.66
RPA43	YOR340C	MPH1	P40562	993 aa		4.7	□□□□□ -1.66
RPA43	YOR340C	OYE3	P41816	400 aa	Predicted RBP	4.7	□□□□□ -1.66
RPA43	YOR340C	YLR225C	Q05948	407 aa	Known RBP	4.7	□□□□□ -1.66
RPA43	YOR340C	OPI10	Q08202	246 aa		4.7	□□□□□ -1.66
RPA43	YOR340C	TRE1	Q08919	783 aa		4.7	□□□□□ -1.66
RPA43	YOR340C	GNT1	Q12096	491 aa		4.7	□□□□□ -1.66
RPA43	YOR340C	RKM4	Q12504	494 aa		4.7	□□□□□ -1.66
RPA43	YOR340C	ABD1	P32783	436 aa	Predicted RBP	4.69	□□□□□ -1.66
RPA43	YOR340C	NMD2	P38798	1089 aa	Known RBP	4.69	□□□□□ -1.66
RPA43	YOR340C	TNA1	P53322	534 aa		4.69	□□□□□ -1.66
RPA43	YOR340C	ESC2	Q06340	456 aa		4.69	□□□□□ -1.66
RPA43	YOR340C	TDA5	Q06417	326 aa	Known RBP	4.69	□□□□□ -1.66
RPA43	YOR340C	BDF2	Q07442	638 aa		4.69	□□□□□ -1.66
RPA43	YOR340C	CDC53	Q12018	815 aa	Known RBP	4.69	□□□□□ -1.66
RPA43	YOR340C	KRE5	P22023	1365 aa		4.68	□□□□□ -1.66
RPA43	YOR340C	YER152C	P10356	443 aa		4.68	□□□□□ -1.66
RPA43	YOR340C	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.68	□□□□□ -1.66	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 11.9 ms