RNA–Protein interactions for RNA: YOR171C

LCB4, Transcript of Sphingoid long-chain base kinase, yeast

Gene LCB4, Length 1,875 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCB4	YOR171C	MCA1	Q08601	432 aa		3.88	□□□□□ -1.79
LCB4	YOR171C	HRK1	Q08732	759 aa	Known RBP	3.88	□□□□□ -1.79
LCB4	YOR171C	DBP2	P24783	546 aa	Known RBP	3.87	□□□□□ -1.79
LCB4	YOR171C	TAT1	P38085	619 aa		3.87	□□□□□ -1.79
LCB4	YOR171C	YFL054C	P43549	646 aa		3.87	□□□□□ -1.79
LCB4	YOR171C	IES1	P43579	692 aa		3.87	□□□□□ -1.79
LCB4	YOR171C	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	3.87	□□□□□ -1.79	not detected
LCB4	YOR171C	GRX4	P32642	244 aa		3.86	□□□□□ -1.79
LCB4	YOR171C	WHI3	P34761	661 aa	Known RBP	3.86	□□□□□ -1.79
LCB4	YOR171C	PNT1	P38969	423 aa		3.86	□□□□□ -1.79
LCB4	YOR171C	CCT8	P47079	568 aa	Known RBP	3.86	□□□□□ -1.79
LCB4	YOR171C	PSK2	Q08217	1101 aa		3.86	□□□□□ -1.79
LCB4	YOR171C	FLC1	Q08967	793 aa		3.86	□□□□□ -1.79
LCB4	YOR171C	BLI1	P35727	113 aa		3.86	□□□□□ -1.79
LCB4	YOR171C	ALG12	P53730	551 aa		3.86	□□□□□ -1.79
LCB4	YOR171C	ESF2	P53743	316 aa	Known RBP	3.86	□□□□□ -1.79
LCB4	YOR171C	ENT2	Q05785	613 aa		3.86	□□□□□ -1.79
LCB4	YOR171C	SPP382	Q06411	708 aa	Predicted RBP	3.86	□□□□□ -1.79
LCB4	YOR171C	YVC1	Q12324	675 aa		3.86	□□□□□ -1.79
LCB4	YOR171C	ERP4	Q12450	207 aa		3.86	□□□□□ -1.79
LCB4	YOR171C	YOR131C	Q12486	218 aa		3.86	□□□□□ -1.79
LCB4	YOR171C	RPL11A	P0C0W9	174 aa	Known RBP	3.85	□□□□□ -1.79
LCB4	YOR171C	SNF5	P18480	905 aa		3.85	□□□□□ -1.79
LCB4	YOR171C	YSC84	P32793	468 aa		3.85	□□□□□ -1.79
LCB4	YOR171C	SAF1	P38352	637 aa		3.85	□□□□□ -1.79
LCB4	YOR171C	RSP5	P39940	809 aa	Known RBP	3.85	□□□□□ -1.79
LCB4	YOR171C	RPN3	P40016	523 aa	Known RBP	3.85	□□□□□ -1.79
LCB4	YOR171C	MXR1	P40029	184 aa		3.85	□□□□□ -1.79
LCB4	YOR171C	MMM1	P41800	426 aa		3.85	□□□□□ -1.79
LCB4	YOR171C	YGR125W	P53273	1036 aa		3.85	□□□□□ -1.79
LCB4	YOR171C	UTP8	P53276	713 aa	Known RBP	3.85	□□□□□ -1.79
LCB4	YOR171C	YPL034W	Q03083	165 aa		3.85	□□□□□ -1.79
LCB4	YOR171C	SPO75	Q07798	868 aa		3.85	□□□□□ -1.79
LCB4	YOR171C	OSH2	Q12451	1283 aa		3.85	□□□□□ -1.79
LCB4	YOR171C	NKP1	Q12493	238 aa		3.85	□□□□□ -1.79
LCB4	YOR171C	RPL11B	Q3E757	174 aa	Predicted RBP	3.85	□□□□□ -1.79
LCB4	YOR171C	CIT1	P00890	479 aa		3.84	□□□□□ -1.79
LCB4	YOR171C	OPI1	P21957	404 aa		3.84	□□□□□ -1.79
LCB4	YOR171C	PWP2	P25635	923 aa	Known RBP	3.84	□□□□□ -1.79
LCB4	YOR171C	HBS1	P32769	611 aa	Known RBP	3.84	□□□□□ -1.79
LCB4	YOR171C	NFU1	P32860	256 aa		3.84	□□□□□ -1.79
LCB4	YOR171C	TIM23	P32897	222 aa		3.84	□□□□□ -1.79
LCB4	YOR171C	SNF7	P39929	240 aa	Known RBP	3.84	□□□□□ -1.79
LCB4	YOR171C	ERP6	P53198	216 aa		3.84	□□□□□ -1.79
LCB4	YOR171C	RCL1	Q08096	367 aa	Predicted RBP	3.84	□□□□□ -1.79
LCB4	YOR171C	SAM35	P14693	329 aa		3.84	□□□□□ -1.8
LCB4	YOR171C	HSP60	P19882	572 aa	Known RBP	3.84	□□□□□ -1.8
LCB4	YOR171C	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	3.84	□□□□□ -1.8	not detected
LCB4	YOR171C	BAP2	P38084	609 aa		3.84	□□□□□ -1.8
LCB4	YOR171C	ALR2	P43553	858 aa		3.84	□□□□□ -1.8
LCB4	YOR171C	CIT3	P43635	486 aa		3.84	□□□□□ -1.8
LCB4	YOR171C	GUS1	P46655	708 aa	Known RBP RIP-Chip data	3.84	□□□□□ -1.8	not detected
LCB4	YOR171C	TNA1	P53322	534 aa		3.84	□□□□□ -1.8
LCB4	YOR171C	CEF1	Q03654	590 aa	Predicted RBP	3.84	□□□□□ -1.8
LCB4	YOR171C	POB3	Q04636	552 aa	Known RBP	3.84	□□□□□ -1.8
LCB4	YOR171C	EAF1	Q06337	982 aa		3.84	□□□□□ -1.8
LCB4	YOR171C	YLR122C	Q12312	125 aa		3.84	□□□□□ -1.8
LCB4	YOR171C	ERR1	P0CX10	437 aa		3.83	□□□□□ -1.8
LCB4	YOR171C	ERR2	P0CX11	437 aa		3.83	□□□□□ -1.8
LCB4	YOR171C	PRP9	P19736	530 aa	Known RBP	3.83	□□□□□ -1.8
LCB4	YOR171C	ARE1	P25628	610 aa		3.83	□□□□□ -1.8
LCB4	YOR171C	COQ2	P32378	372 aa		3.83	□□□□□ -1.8
LCB4	YOR171C	SLA2	P33338	968 aa		3.83	□□□□□ -1.8
LCB4	YOR171C	OYE3	P41816	400 aa	Predicted RBP	3.83	□□□□□ -1.8
LCB4	YOR171C	HOS3	Q02959	697 aa	Known RBP	3.83	□□□□□ -1.8
LCB4	YOR171C	SVL3	Q03088	825 aa	Known RBP	3.83	□□□□□ -1.8
LCB4	YOR171C	CAN1	P04817	590 aa		3.82	□□□□□ -1.8
LCB4	YOR171C	TRX2	P22803	104 aa	Known RBP	3.82	□□□□□ -1.8
LCB4	YOR171C	SEC6	P32844	805 aa		3.82	□□□□□ -1.8
LCB4	YOR171C	YHL012W	P38709	493 aa		3.82	□□□□□ -1.8
LCB4	YOR171C	NUP82	P40368	713 aa		3.82	□□□□□ -1.8
LCB4	YOR171C	RTA1	P53047	317 aa		3.82	□□□□□ -1.8
LCB4	YOR171C	TAF8	Q03750	510 aa		3.82	□□□□□ -1.8
LCB4	YOR171C	COQ4	O13525	335 aa		3.81	□□□□□ -1.8
LCB4	YOR171C	RPN12	P32496	274 aa		3.81	□□□□□ -1.8
LCB4	YOR171C	YKL151C	P36059	337 aa		3.81	□□□□□ -1.8
LCB4	YOR171C	BET3	P36149	193 aa		3.81	□□□□□ -1.8
LCB4	YOR171C	GRX7	P38068	203 aa		3.81	□□□□□ -1.8
LCB4	YOR171C	MAL31	P38156	614 aa		3.81	□□□□□ -1.8
LCB4	YOR171C	FUI1	P38196	639 aa		3.81	□□□□□ -1.8
LCB4	YOR171C	YGL081W	P53156	320 aa		3.81	□□□□□ -1.8
LCB4	YOR171C	RCM1	P53972	490 aa		3.81	□□□□□ -1.8
LCB4	YOR171C	YDR306C	Q06640	478 aa		3.81	□□□□□ -1.8
LCB4	YOR171C	ACM1	Q08981	209 aa		3.81	□□□□□ -1.8
LCB4	YOR171C	CHS2	P14180	963 aa		3.81	□□□□□ -1.8
LCB4	YOR171C	MSB1	P21339	1137 aa	Known RBP	3.81	□□□□□ -1.8
LCB4	YOR171C	VPS24	P36095	224 aa	Known RBP	3.81	□□□□□ -1.8
LCB4	YOR171C	UGA2	P38067	497 aa		3.81	□□□□□ -1.8
LCB4	YOR171C	PEX7	P39108	375 aa		3.81	□□□□□ -1.8
LCB4	YOR171C	HRQ1	Q05549	1077 aa		3.81	□□□□□ -1.8
LCB4	YOR171C	DUS3	Q06053	668 aa	Known RBP	3.81	□□□□□ -1.8
LCB4	YOR171C	YOR059C	Q08448	450 aa	Known RBP	3.81	□□□□□ -1.8
LCB4	YOR171C	SNU66	Q12420	587 aa	Predicted RBP	3.81	□□□□□ -1.8
LCB4	YOR171C	TOP3	P13099	656 aa		3.8	□□□□□ -1.8
LCB4	YOR171C	SRO9	P25567	434 aa	Known RBP	3.8	□□□□□ -1.8
LCB4	YOR171C	CDC12	P32468	407 aa	Known RBP	3.8	□□□□□ -1.8
LCB4	YOR171C	ENP1	P38333	483 aa	Known RBP	3.8	□□□□□ -1.8
LCB4	YOR171C	GGA2	P38817	585 aa	Known RBP	3.8	□□□□□ -1.8
LCB4	YOR171C	CCC2	P38995	1004 aa		3.8	□□□□□ -1.8
LCB4	YOR171C	PIK1	P39104	1066 aa		3.8	□□□□□ -1.8

Retrieved 100 of 5,963 RNA–protein pairs in 12.1 ms