RNA–Protein interactions for RNA: ENST00000454612.6

DDR1-240, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene DDR1, Length 3,942 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-240ENST00000454612 ESPNB1AK53 854 aa13.48□□□□□ -0.25
DDR1-240ENST00000454612 ATP5J2-PTCD1G3V325 749 aa13.48□□□□□ -0.25
DDR1-240ENST00000454612 STRN4Q9NRL3 753 aa13.48□□□□□ -0.25
DDR1-240ENST00000454612 PRR36Q9H6K5 1346 aa13.48□□□□□ -0.25
DDR1-240ENST00000454612 TAF7LQ5H9L4 462 aa13.48□□□□□ -0.25
DDR1-240ENST00000454612 PRPF40BQ6NWY9 871 aaKnown RBP13.48□□□□□ -0.25
DDR1-240ENST00000454612 CCDC83Q8IWF9 413 aa13.48□□□□□ -0.25
DDR1-240ENST00000454612 ANTXR1Q9H6X2 564 aa13.48□□□□□ -0.25
DDR1-240ENST00000454612 FAM135BQ49AJ0 1406 aa13.47□□□□□ -0.25
DDR1-240ENST00000454612 JAKMIP1Q96N16 626 aaKnown RBP13.47□□□□□ -0.25
DDR1-240ENST00000454612 NEXNQ0ZGT2 675 aa13.47□□□□□ -0.25
DDR1-240ENST00000454612 SPC24Q8NBT2 197 aa13.47□□□□□ -0.25
DDR1-240ENST00000454612 SIRT1Q96EB6 747 aa13.47□□□□□ -0.25
DDR1-240ENST00000454612 GPATCH3Q96I76 525 aa13.47□□□□□ -0.25
DDR1-240ENST00000454612 NRXN3Q9Y4C0 1643 aa13.47□□□□□ -0.25
DDR1-240ENST00000454612 GAS2L3Q86XJ1 694 aa13.47□□□□□ -0.25
DDR1-240ENST00000454612 CASTP20810 708 aaKnown RBP13.46□□□□□ -0.25
DDR1-240ENST00000454612 CHMP4CQ96CF2 233 aa13.46□□□□□ -0.25
DDR1-240ENST00000454612 NECAB1Q8N987 351 aa13.46□□□□□ -0.25
DDR1-240ENST00000454612 PHF8Q9UPP1 1060 aa13.46□□□□□ -0.25
DDR1-240ENST00000454612 DDX11Q96FC9 970 aa13.46□□□□□ -0.26
DDR1-240ENST00000454612 TOMM22Q9NS69 142 aa13.46□□□□□ -0.26
DDR1-240ENST00000454612 PIK3R4Q99570 1358 aa13.46□□□□□ -0.26
DDR1-240ENST00000454612 TMX3Q96JJ7 454 aa13.45□□□□□ -0.26
DDR1-240ENST00000454612 LRRC7Q96NW7 1537 aa13.45□□□□□ -0.26
DDR1-240ENST00000454612 NBPF7P0C2Y1 421 aaPredicted RBP13.45□□□□□ -0.26
DDR1-240ENST00000454612 ZKSCAN1P17029 563 aaPredicted RBP13.45□□□□□ -0.26
DDR1-240ENST00000454612 ZRSR1Q15695 479 aaKnown RBP13.45□□□□□ -0.26
DDR1-240ENST00000454612 CAMK4Q16566 473 aa13.45□□□□□ -0.26
DDR1-240ENST00000454612 ZNF830Q96NB3 372 aaPredicted RBP13.45□□□□□ -0.26
DDR1-240ENST00000454612 BBXQ8WY36 941 aaPredicted RBP13.45□□□□□ -0.26
DDR1-240ENST00000454612 DLC1Q96QB1 1528 aa13.45□□□□□ -0.26
DDR1-240ENST00000454612 CNTROBQ8N137 903 aa13.45□□□□□ -0.26
DDR1-240ENST00000454612 USP26Q9BXU7 913 aa13.45□□□□□ -0.26
DDR1-240ENST00000454612 LRRC2Q9BYS8 371 aa13.44□□□□□ -0.26
DDR1-240ENST00000454612 MAP3K2Q9Y2U5 619 aa13.44□□□□□ -0.26
DDR1-240ENST00000454612 MED14O60244 1454 aa13.44□□□□□ -0.26
DDR1-240ENST00000454612 ZNF142P52746 1687 aaPredicted RBP13.44□□□□□ -0.26
DDR1-240ENST00000454612 CHL1O00533 1208 aa13.44□□□□□ -0.26
DDR1-240ENST00000454612 PLEKHO1Q53GL0 409 aaPredicted RBP13.44□□□□□ -0.26
DDR1-240ENST00000454612 ARHGAP45Q92619 1136 aa13.44□□□□□ -0.26
DDR1-240ENST00000454612 PALD1Q9ULE6 856 aa13.44□□□□□ -0.26
DDR1-240ENST00000454612 H3BQV1 296 aa13.44□□□□□ -0.26
DDR1-240ENST00000454612 IFFO2Q5TF58 517 aa13.44□□□□□ -0.26
DDR1-240ENST00000454612 UNC5CLQ8IV45 518 aa13.44□□□□□ -0.26
DDR1-240ENST00000454612 ORAI2Q96SN7 254 aa13.44□□□□□ -0.26
DDR1-240ENST00000454612 TFIP11Q9UBB9 837 aaKnown RBP13.44□□□□□ -0.26
DDR1-240ENST00000454612 CLCN1P35523 988 aa13.43□□□□□ -0.26
DDR1-240ENST00000454612 RAB11FIP4Q86YS3 637 aa13.43□□□□□ -0.26
DDR1-240ENST00000454612 DNAAF4Q8WXU2 420 aa13.43□□□□□ -0.26
DDR1-240ENST00000454612 PRAMEF22A3QJZ6 481 aa13.43□□□□□ -0.26
DDR1-240ENST00000454612 DIP2AQ14689 1571 aa13.42□□□□□ -0.26
DDR1-240ENST00000454612 PRIM1P49642 420 aaKnown RBP13.42□□□□□ -0.26
DDR1-240ENST00000454612 FAM173BQ6P4H8 233 aa13.42□□□□□ -0.26
DDR1-240ENST00000454612 SYAP1Q96A49 352 aaPredicted RBP13.42□□□□□ -0.26
DDR1-240ENST00000454612 TECPR2O15040 1411 aa13.42□□□□□ -0.26
DDR1-240ENST00000454612 KIAA2012Q0VF49 1180 aa13.42□□□□□ -0.26
DDR1-240ENST00000454612 BICD2Q8TD16 824 aa13.42□□□□□ -0.26
DDR1-240ENST00000454612 TPM2P07951 284 aa13.42□□□□□ -0.26
DDR1-240ENST00000454612 FAM184AQ8NB25 1140 aa13.42□□□□□ -0.26
DDR1-240ENST00000454612 IL17REQ8NFR9 667 aa13.42□□□□□ -0.26
DDR1-240ENST00000454612 MYD88Q99836 296 aa13.42□□□□□ -0.26
DDR1-240ENST00000454612 ZNF335Q9H4Z2 1342 aaPredicted RBP13.41□□□□□ -0.26
DDR1-240ENST00000454612 RHPN1Q8TCX5 695 aa13.41□□□□□ -0.26
DDR1-240ENST00000454612 EVA1CP58658 441 aa13.41□□□□□ -0.26
DDR1-240ENST00000454612 GUCY1B3Q02153 619 aa13.41□□□□□ -0.26
DDR1-240ENST00000454612 VIRMAQ69YN4 1812 aaKnown RBP13.41□□□□□ -0.26
DDR1-240ENST00000454612 PTCH1Q13635 1447 aa13.41□□□□□ -0.26
DDR1-240ENST00000454612 APPP05067 770 aa13.41□□□□□ -0.26
DDR1-240ENST00000454612 TNNT3P45378 269 aaPredicted RBP13.41□□□□□ -0.26
DDR1-240ENST00000454612 EDC3Q96F86 508 aaKnown RBP13.41□□□□□ -0.26
DDR1-240ENST00000454612 TMEM94Q12767 1356 aa13.4□□□□□ -0.26
DDR1-240ENST00000454612 TULP1O00294 542 aaPredicted RBP13.4□□□□□ -0.26
DDR1-240ENST00000454612 DDX58O95786 925 aaKnown RBP13.4□□□□□ -0.26
DDR1-240ENST00000454612 RAB3GAP1Q15042 981 aa13.4□□□□□ -0.26
DDR1-240ENST00000454612 WASHC4Q2M389 1173 aa13.4□□□□□ -0.26
DDR1-240ENST00000454612 NBPF6Q5VWK0 638 aa13.4□□□□□ -0.26
DDR1-240ENST00000454612 RUFY2Q8WXA3 655 aa13.4□□□□□ -0.26
DDR1-240ENST00000454612 NBPF4Q96M43 638 aa13.4□□□□□ -0.26
DDR1-240ENST00000454612 C19orf44Q9H6X5 657 aa13.4□□□□□ -0.26
DDR1-240ENST00000454612 CPS1P31327 1500 aa13.4□□□□□ -0.26
DDR1-240ENST00000454612 RBM25P49756 843 aaKnown RBP13.4□□□□□ -0.26
DDR1-240ENST00000454612 ESYT1Q9BSJ8 1104 aa13.4□□□□□ -0.26
DDR1-240ENST00000454612 PDCL3Q9H2J4 239 aa13.4□□□□□ -0.26
DDR1-240ENST00000454612 SNRKQ9NRH2 765 aa13.4□□□□□ -0.26
DDR1-240ENST00000454612 ZNF853P0CG23 659 aa13.39□□□□□ -0.27
DDR1-240ENST00000454612 ZNF771Q7L3S4 317 aaPredicted RBP13.39□□□□□ -0.27
DDR1-240ENST00000454612 ZNF592Q92610 1267 aa13.39□□□□□ -0.27
DDR1-240ENST00000454612 FMNL2Q96PY5 1086 aa13.39□□□□□ -0.27
DDR1-240ENST00000454612 CIZ1Q9ULV3 898 aaPredicted RBP13.39□□□□□ -0.27
DDR1-240ENST00000454612 NPHP1O15259 732 aa13.39□□□□□ -0.27
DDR1-240ENST00000454612 PTMSP20962 102 aa13.39□□□□□ -0.27
DDR1-240ENST00000454612 HOXC9P31274 260 aa13.39□□□□□ -0.27
DDR1-240ENST00000454612 GNL2Q13823 731 aaKnown RBP13.39□□□□□ -0.27
DDR1-240ENST00000454612 ZSCAN23Q3MJ62 389 aa13.39□□□□□ -0.27
DDR1-240ENST00000454612 CPSF1Q10570 1443 aaKnown RBP13.38□□□□□ -0.27
DDR1-240ENST00000454612 FKBP4Q02790 459 aaKnown RBP eCLIP13.38□□□□□ -0.27
DDR1-240ENST00000454612 LMTK3Q96Q04 1460 aa13.38□□□□□ -0.27
DDR1-240ENST00000454612 SETD1AO15047 1707 aaKnown RBP13.38□□□□□ -0.27
DDR1-240ENST00000454612 LARP1BQ659C4 914 aaKnown RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 213.9 ms