RNA–Protein interactions for RNA: ENST00000454612.6

DDR1-240, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene DDR1, Length 3,942 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-240ENST00000454612 NISCHQ9Y2I1 1504 aa22.32■■□□□ 1.16
DDR1-240ENST00000454612 DCAF8L2P0C7V8 631 aa19.96■□□□□ 0.79
DDR1-240ENST00000454612 SHROOM4Q9ULL8 1493 aa19.72■□□□□ 0.75
DDR1-240ENST00000454612 SUPT5HO00267 1087 aaKnown RBP19.6■□□□□ 0.73
DDR1-240ENST00000454612 CCDC180Q9P1Z9 1646 aa19.37■□□□□ 0.69
DDR1-240ENST00000454612 ABCC9O60706 1549 aa18.88■□□□□ 0.61
DDR1-240ENST00000454612 EHMT2Q96KQ7 1210 aa18.85■□□□□ 0.61
DDR1-240ENST00000454612 ZCCHC6Q5VYS8 1495 aaKnown RBP18.67■□□□□ 0.58
DDR1-240ENST00000454612 PCGF6Q9BYE7 350 aa18.43■□□□□ 0.54
DDR1-240ENST00000454612 FAM9AQ8IZU1 332 aaPredicted RBP18.42■□□□□ 0.54
DDR1-240ENST00000454612 DCAF1Q9Y4B6 1507 aa18.26■□□□□ 0.51
DDR1-240ENST00000454612 LOC105371045A0A1W2PR82 267 aa18.21■□□□□ 0.51
DDR1-240ENST00000454612 NACADO15069 1562 aa18.19■□□□□ 0.5
DDR1-240ENST00000454612 RB1CC1Q8TDY2 1594 aa18.15■□□□□ 0.5
DDR1-240ENST00000454612 CHIC1Q5VXU3 224 aa18.14■□□□□ 0.49
DDR1-240ENST00000454612 TTBK1Q5TCY1 1321 aaPredicted RBP18.12■□□□□ 0.49
DDR1-240ENST00000454612 SCRIBQ14160 1630 aa18.11■□□□□ 0.49
DDR1-240ENST00000454612 MYO15BQ96JP2 1530 aa18.06■□□□□ 0.48
DDR1-240ENST00000454612 PPARGC1BQ86YN6 1023 aaKnown RBP18.04■□□□□ 0.48
DDR1-240ENST00000454612 PABPN1Q86U42 306 aaKnown RBP eCLIP17.91■□□□□ 0.46
DDR1-240ENST00000454612 TRIM41Q8WV44 630 aa17.87■□□□□ 0.45
DDR1-240ENST00000454612 RANGAP1P46060 587 aaPredicted RBP17.73■□□□□ 0.43
DDR1-240ENST00000454612 HRCP23327 699 aa17.71■□□□□ 0.43
DDR1-240ENST00000454612 PELP1Q8IZL8 1130 aaKnown RBP17.65■□□□□ 0.42
DDR1-240ENST00000454612 UNC13AQ9UPW8 1703 aa17.57■□□□□ 0.4
DDR1-240ENST00000454612 CECR2Q9BXF3 1484 aa17.45■□□□□ 0.38
DDR1-240ENST00000454612 RSF1Q96T23 1441 aaPredicted RBP17.44■□□□□ 0.38
DDR1-240ENST00000454612 BICRAQ9NZM4 1560 aa17.43■□□□□ 0.38
DDR1-240ENST00000454612 TRIM26Q12899 539 aaPredicted RBP17.43■□□□□ 0.38
DDR1-240ENST00000454612 CCER1Q8TC90 406 aaPredicted RBP17.37■□□□□ 0.37
DDR1-240ENST00000454612 UBTFP17480 764 aaKnown RBP17.36■□□□□ 0.37
DDR1-240ENST00000454612 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.3■□□□□ 0.36
DDR1-240ENST00000454612 MROH2BQ7Z745 1585 aa17.29■□□□□ 0.36
DDR1-240ENST00000454612 BAZ1AQ9NRL2 1556 aaPredicted RBP17.29■□□□□ 0.36
DDR1-240ENST00000454612 MYT1Q01538 1121 aa17.21■□□□□ 0.35
DDR1-240ENST00000454612 SMARCA4P51532 1647 aa17.18■□□□□ 0.34
DDR1-240ENST00000454612 WIZO95785 1651 aa17.14■□□□□ 0.33
DDR1-240ENST00000454612 YTHDC1Q96MU7 727 aaKnown RBP17.12■□□□□ 0.33
DDR1-240ENST00000454612 APLP2Q06481 763 aa17.1■□□□□ 0.33
DDR1-240ENST00000454612 HNRNPUL2Q1KMD3 747 aaKnown RBP17.08■□□□□ 0.33
DDR1-240ENST00000454612 EIF4G1Q04637 1599 aaKnown RBP17.06■□□□□ 0.32
DDR1-240ENST00000454612 ZEB1P37275 1124 aaPredicted RBP17.02■□□□□ 0.32
DDR1-240ENST00000454612 BAZ1BQ9UIG0 1483 aaKnown RBP17.01■□□□□ 0.31
DDR1-240ENST00000454612 ATP1B4Q9UN42 357 aaPredicted RBP17■□□□□ 0.31
DDR1-240ENST00000454612 ATAD2BQ9ULI0 1458 aa16.99■□□□□ 0.31
DDR1-240ENST00000454612 SMARCA2P51531 1590 aa16.97■□□□□ 0.31
DDR1-240ENST00000454612 ITGAEP38570 1179 aa16.96■□□□□ 0.31
DDR1-240ENST00000454612 TOP2AP11388 1531 aaKnown RBP16.91■□□□□ 0.3
DDR1-240ENST00000454612 CC2D2AQ9P2K1 1620 aa16.87■□□□□ 0.29
DDR1-240ENST00000454612 SCAF1Q9H7N4 1312 aaKnown RBP16.84■□□□□ 0.29
DDR1-240ENST00000454612 CCDC88BA6NC98 1476 aa16.82■□□□□ 0.28
DDR1-240ENST00000454612 NCAPD3P42695 1498 aa16.8■□□□□ 0.28
DDR1-240ENST00000454612 PEG3Q9GZU2 1588 aa16.79■□□□□ 0.28
DDR1-240ENST00000454612 DIEXFQ68CQ4 756 aaKnown RBP16.73■□□□□ 0.27
DDR1-240ENST00000454612 HMGXB3Q12766 1538 aa16.72■□□□□ 0.27
DDR1-240ENST00000454612 ABCC8Q09428 1581 aa16.7■□□□□ 0.26
DDR1-240ENST00000454612 DNAJC5BQ9UF47 199 aa16.69■□□□□ 0.26
DDR1-240ENST00000454612 CENPBP07199 599 aaPredicted RBP16.67■□□□□ 0.26
DDR1-240ENST00000454612 CSRNP3Q8WYN3 585 aa16.66■□□□□ 0.26
DDR1-240ENST00000454612 SOGA1O94964 1423 aa16.59■□□□□ 0.25
DDR1-240ENST00000454612 GTF3C3Q9Y5Q9 886 aa16.55■□□□□ 0.24
DDR1-240ENST00000454612 P3H3Q8IVL6 736 aa16.54■□□□□ 0.24
DDR1-240ENST00000454612 RUSC2Q8N2Y8 1516 aa16.52■□□□□ 0.24
DDR1-240ENST00000454612 CADPSQ9ULU8 1353 aa16.5■□□□□ 0.23
DDR1-240ENST00000454612 NEUROD1Q13562 356 aa16.48■□□□□ 0.23
DDR1-240ENST00000454612 CNGB1Q14028 1251 aaPredicted RBP16.47■□□□□ 0.23
DDR1-240ENST00000454612 CEP162Q5TB80 1403 aa16.46■□□□□ 0.23
DDR1-240ENST00000454612 WRNQ14191 1432 aaPredicted RBP eCLIP16.44■□□□□ 0.22
DDR1-240ENST00000454612 NESP48681 1621 aa16.43■□□□□ 0.22
DDR1-240ENST00000454612 CFTRP13569 1480 aa16.41■□□□□ 0.22
DDR1-240ENST00000454612 FAM50AQ14320 339 aaKnown RBP16.39■□□□□ 0.21
DDR1-240ENST00000454612 TNIKQ9UKE5 1360 aa16.39■□□□□ 0.21
DDR1-240ENST00000454612 ARID3CA6NKF2 412 aa16.37■□□□□ 0.21
DDR1-240ENST00000454612 ZNF316A6NFI3 1004 aaPredicted RBP16.37■□□□□ 0.21
DDR1-240ENST00000454612 ACIN1Q9UKV3 1341 aaKnown RBP16.36■□□□□ 0.21
DDR1-240ENST00000454612 FANCD2Q9BXW9 1451 aa16.34■□□□□ 0.21
DDR1-240ENST00000454612 PDS5BQ9NTI5 1447 aa16.33■□□□□ 0.2
DDR1-240ENST00000454612 ERCC6Q03468 1493 aa16.3■□□□□ 0.2
DDR1-240ENST00000454612 EEA1Q15075 1411 aa16.29■□□□□ 0.2
DDR1-240ENST00000454612 MIER1Q8N108 512 aa16.29■□□□□ 0.2
DDR1-240ENST00000454612 CEP164Q9UPV0 1460 aa16.27■□□□□ 0.2
DDR1-240ENST00000454612 HIRIP3Q9BW71 556 aaPredicted RBP16.27■□□□□ 0.2
DDR1-240ENST00000454612 GOLGA3Q08378 1498 aa16.27■□□□□ 0.19
DDR1-240ENST00000454612 BCANQ96GW7 911 aa16.26■□□□□ 0.19
DDR1-240ENST00000454612 LAMC3Q9Y6N6 1575 aa16.26■□□□□ 0.19
DDR1-240ENST00000454612 SYNJ1O43426 1573 aa16.26■□□□□ 0.19
DDR1-240ENST00000454612 POLR3GLQ9BT43 218 aa16.2■□□□□ 0.18
DDR1-240ENST00000454612 CUX1P39880 1505 aa16.16■□□□□ 0.18
DDR1-240ENST00000454612 CLIP1P30622 1438 aa16.16■□□□□ 0.18
DDR1-240ENST00000454612 RAPGEF2Q9Y4G8 1499 aa16.14■□□□□ 0.17
DDR1-240ENST00000454612 PRDM2Q13029 1718 aa16.14■□□□□ 0.17
DDR1-240ENST00000454612 TOP2BQ02880 1626 aa16.12■□□□□ 0.17
DDR1-240ENST00000454612 FGD5Q6ZNL6 1462 aa16.11■□□□□ 0.17
DDR1-240ENST00000454612 KIF21AQ7Z4S6 1674 aa16.09■□□□□ 0.17
DDR1-240ENST00000454612 TOPBP1Q92547 1522 aa16.08■□□□□ 0.16
DDR1-240ENST00000454612 CUX2O14529 1486 aa16.08■□□□□ 0.16
DDR1-240ENST00000454612 KANK4Q5T7N3 995 aaPredicted RBP16.08■□□□□ 0.16
DDR1-240ENST00000454612 ERICH6Q7L0X2 663 aa16.07■□□□□ 0.16
DDR1-240ENST00000454612 KIF27Q86VH2 1401 aa16.06■□□□□ 0.16
DDR1-240ENST00000454612 DNMBPQ6XZF7 1577 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms