RNA–Protein interactions for RNA: ENSMUST00000042717.12

Trim39-201, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,085 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-201ENSMUST00000042717 Bicdl1A0JNT9 577 aa10.86□□□□□ -0.67
Trim39-201ENSMUST00000042717 Tlr7P58681 1050 aa10.86□□□□□ -0.67
Trim39-201ENSMUST00000042717 SkilQ60665 675 aa10.86□□□□□ -0.67
Trim39-201ENSMUST00000042717 Jmjd4Q8BFT6 427 aa10.86□□□□□ -0.67
Trim39-201ENSMUST00000042717 Sugp2Q8CH09 1067 aa10.86□□□□□ -0.67
Trim39-201ENSMUST00000042717 Lmbr1lQ9D1E5 489 aa10.86□□□□□ -0.67
Trim39-201ENSMUST00000042717 Ppp1r42Q8R1Z4 357 aa10.86□□□□□ -0.67
Trim39-201ENSMUST00000042717 Rtn4Q99P72 1162 aaKnown RBP10.86□□□□□ -0.67
Trim39-201ENSMUST00000042717 Nip7Q9CXK8 180 aaKnown RBP10.86□□□□□ -0.67
Trim39-201ENSMUST00000042717 Adam1aQ60813 791 aa10.85□□□□□ -0.67
Trim39-201ENSMUST00000042717 Atl3Q91YH5 541 aa10.85□□□□□ -0.67
Trim39-201ENSMUST00000042717 Fam71e1A1L3C1 212 aa10.85□□□□□ -0.67
Trim39-201ENSMUST00000042717 Gm12185Q5NCB2 835 aa10.85□□□□□ -0.67
Trim39-201ENSMUST00000042717 Jarid2Q62315 1234 aa10.85□□□□□ -0.67
Trim39-201ENSMUST00000042717 Miga2Q8BK03 593 aa10.85□□□□□ -0.67
Trim39-201ENSMUST00000042717 CarsQ9ER72 831 aaKnown RBP10.85□□□□□ -0.67
Trim39-201ENSMUST00000042717 Flt4P35917 1363 aa10.85□□□□□ -0.67
Trim39-201ENSMUST00000042717 Phf23Q8BSN5 401 aa10.84□□□□□ -0.67
Trim39-201ENSMUST00000042717 FanclQ9CR14 375 aa10.84□□□□□ -0.67
Trim39-201ENSMUST00000042717 Tm6sf1P58749 370 aa10.84□□□□□ -0.67
Trim39-201ENSMUST00000042717 Eif4g2Q62448 906 aaKnown RBP10.84□□□□□ -0.67
Trim39-201ENSMUST00000042717 Sart3Q9JLI8 962 aaKnown RBP10.84□□□□□ -0.67
Trim39-201ENSMUST00000042717 Ubr2Q6WKZ8 1755 aa10.84□□□□□ -0.67
Trim39-201ENSMUST00000042717 NmiO35309 314 aa10.83□□□□□ -0.68
Trim39-201ENSMUST00000042717 Strn4P58404 760 aa10.83□□□□□ -0.68
Trim39-201ENSMUST00000042717 Ankle2Q6P1H6 964 aa10.83□□□□□ -0.68
Trim39-201ENSMUST00000042717 Nwd2Q6P5U7 1742 aa10.83□□□□□ -0.68
Trim39-201ENSMUST00000042717 GakQ99KY4 1305 aa10.83□□□□□ -0.68
Trim39-201ENSMUST00000042717 Shank2Q80Z38 1476 aa10.83□□□□□ -0.68
Trim39-201ENSMUST00000042717 Fkbp5Q64378 456 aa10.83□□□□□ -0.68
Trim39-201ENSMUST00000042717 Soga3Q6NZL0 945 aa10.83□□□□□ -0.68
Trim39-201ENSMUST00000042717 Ankib1Q6ZPS6 1085 aa10.83□□□□□ -0.68
Trim39-201ENSMUST00000042717 Slfnl1Q8BHW9 410 aa10.83□□□□□ -0.68
Trim39-201ENSMUST00000042717 Mast2Q60592 1734 aa10.82□□□□□ -0.68
Trim39-201ENSMUST00000042717 Mst1rQ62190 1378 aa10.82□□□□□ -0.68
Trim39-201ENSMUST00000042717 Col4a1P02463 1669 aa10.82□□□□□ -0.68
Trim39-201ENSMUST00000042717 Taok3Q8BYC6 898 aa10.82□□□□□ -0.68
Trim39-201ENSMUST00000042717 Fer1l6E0CZ42 1862 aa10.82□□□□□ -0.68
Trim39-201ENSMUST00000042717 Ppp2r3aB2RXC8 1150 aa10.82□□□□□ -0.68
Trim39-201ENSMUST00000042717 Igflr1Q3U4N7 345 aa10.82□□□□□ -0.68
Trim39-201ENSMUST00000042717 Zbtb1Q91VL9 713 aa10.82□□□□□ -0.68
Trim39-201ENSMUST00000042717 Kif18aQ91WD7 886 aa10.82□□□□□ -0.68
Trim39-201ENSMUST00000042717 Nphp1Q9QY53 687 aa10.82□□□□□ -0.68
Trim39-201ENSMUST00000042717 Nhsl1Q8CAF4 1587 aa10.81□□□□□ -0.68
Trim39-201ENSMUST00000042717 Grm8P47743 908 aa10.81□□□□□ -0.68
Trim39-201ENSMUST00000042717 Cypt2Q6P924 180 aa10.81□□□□□ -0.68
Trim39-201ENSMUST00000042717 Tnrc6cQ3UHC0 1690 aaKnown RBP10.81□□□□□ -0.68
Trim39-201ENSMUST00000042717 Vps33bP59016 617 aa10.81□□□□□ -0.68
Trim39-201ENSMUST00000042717 Tgfb1i1Q62219 461 aa10.81□□□□□ -0.68
Trim39-201ENSMUST00000042717 Cog6Q8R3I3 657 aa10.81□□□□□ -0.68
Trim39-201ENSMUST00000042717 Tceal9Q9DD24 104 aa10.81□□□□□ -0.68
Trim39-201ENSMUST00000042717 Cacna1sQ02789 1880 aa10.81□□□□□ -0.68
Trim39-201ENSMUST00000042717 Ppfibp2O35711 882 aa10.81□□□□□ -0.68
Trim39-201ENSMUST00000042717 Atp8b2P98199 1209 aa10.81□□□□□ -0.68
Trim39-201ENSMUST00000042717 Trim52Q8CDV4 233 aa10.81□□□□□ -0.68
Trim39-201ENSMUST00000042717 MypnQ5DTJ9 1315 aa10.8□□□□□ -0.68
Trim39-201ENSMUST00000042717 Pa2g4P50580 394 aaKnown RBP10.8□□□□□ -0.68
Trim39-201ENSMUST00000042717 Ccdc27Q3V036 639 aa10.8□□□□□ -0.68
Trim39-201ENSMUST00000042717 Ppm1mQ8BU27 406 aa10.8□□□□□ -0.68
Trim39-201ENSMUST00000042717 Stk36Q69ZM6 1316 aa10.8□□□□□ -0.68
Trim39-201ENSMUST00000042717 Ier5O89113 308 aa10.8□□□□□ -0.68
Trim39-201ENSMUST00000042717 Gtf3c5Q8R2T8 520 aa10.8□□□□□ -0.68
Trim39-201ENSMUST00000042717 Tiam2Q6ZPF3 1715 aa10.8□□□□□ -0.68
Trim39-201ENSMUST00000042717 Tjp1P39447 1745 aaKnown RBP10.79□□□□□ -0.68
Trim39-201ENSMUST00000042717 Brd1E9PZ26 1189 aaKnown RBP10.79□□□□□ -0.68
Trim39-201ENSMUST00000042717 Map7O88735 730 aa10.79□□□□□ -0.68
Trim39-201ENSMUST00000042717 Pde4dQ01063 747 aa10.79□□□□□ -0.68
Trim39-201ENSMUST00000042717 Hs1bp3Q3TC93 395 aa10.79□□□□□ -0.68
Trim39-201ENSMUST00000042717 HellsQ60848 821 aa10.79□□□□□ -0.68
Trim39-201ENSMUST00000042717 BcanQ61361 883 aa10.79□□□□□ -0.68
Trim39-201ENSMUST00000042717 Zbtb40Q6PCS8 1258 aa10.79□□□□□ -0.68
Trim39-201ENSMUST00000042717 Myd88P22366 296 aa10.79□□□□□ -0.68
Trim39-201ENSMUST00000042717 GpkowQ56A08 488 aa10.79□□□□□ -0.68
Trim39-201ENSMUST00000042717 Wwc1Q5SXA9 1104 aa10.79□□□□□ -0.68
Trim39-201ENSMUST00000042717 Morc2aQ69ZX6 1030 aa10.79□□□□□ -0.68
Trim39-201ENSMUST00000042717 Eif3aP23116 1344 aaKnown RBP10.78□□□□□ -0.68
Trim39-201ENSMUST00000042717 Ddx58Q6Q899 926 aa10.78□□□□□ -0.68
Trim39-201ENSMUST00000042717 Mylk2Q8VCR8 613 aa10.78□□□□□ -0.68
Trim39-201ENSMUST00000042717 CanxP35564 591 aaKnown RBP10.78□□□□□ -0.68
Trim39-201ENSMUST00000042717 Ttc19Q8CC21 365 aa10.78□□□□□ -0.68
Trim39-201ENSMUST00000042717 Gigyf1Q99MR1 1044 aaKnown RBP10.78□□□□□ -0.68
Trim39-201ENSMUST00000042717 Ak7Q9D2H2 614 aa10.78□□□□□ -0.68
Trim39-201ENSMUST00000042717 Rapgef4Q9EQZ6 1011 aa10.78□□□□□ -0.68
Trim39-201ENSMUST00000042717 Ltbp1Q8CG19 1712 aa10.78□□□□□ -0.68
Trim39-201ENSMUST00000042717 Mmp8O70138 465 aa10.78□□□□□ -0.68
Trim39-201ENSMUST00000042717 LifrP42703 1092 aa10.78□□□□□ -0.68
Trim39-201ENSMUST00000042717 Lrit1Q8K099 624 aa10.78□□□□□ -0.68
Trim39-201ENSMUST00000042717 BcorQ8CGN4 1759 aa10.78□□□□□ -0.68
Trim39-201ENSMUST00000042717 Atg4a-psA0A0G2JFS9 396 aa10.77□□□□□ -0.68
Trim39-201ENSMUST00000042717 Ccdc183A2AJB1 534 aa10.77□□□□□ -0.68
Trim39-201ENSMUST00000042717 Smarcc1P97496 1104 aa10.77□□□□□ -0.68
Trim39-201ENSMUST00000042717 Atg4aQ8C9S8 396 aa10.77□□□□□ -0.68
Trim39-201ENSMUST00000042717 Stard3nlQ9DCI3 235 aa10.77□□□□□ -0.68
Trim39-201ENSMUST00000042717 Kat6bQ8BRB7 1872 aa10.77□□□□□ -0.69
Trim39-201ENSMUST00000042717 Ltb4r2Q9JJL9 360 aa10.77□□□□□ -0.69
Trim39-201ENSMUST00000042717 Cetn4Q8K4K1 168 aa10.76□□□□□ -0.69
Trim39-201ENSMUST00000042717 Nlrp3Q8R4B8 1033 aa10.76□□□□□ -0.69
Trim39-201ENSMUST00000042717 KnstrnQ9D9Z1 312 aaKnown RBP10.76□□□□□ -0.69
Trim39-201ENSMUST00000042717 Cwc25Q9DBF7 416 aa10.76□□□□□ -0.69
Trim39-201ENSMUST00000042717 Erbb4Q61527 1308 aa10.76□□□□□ -0.69
Retrieved 100 of 22,080 RNA–protein pairs in 35.1 ms