RNA–Protein interactions for RNA: ENSMUST00000042717.12

Trim39-201, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,085 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-201ENSMUST00000042717 NischQ80TM9 1593 aa18.01■□□□□ 0.47
Trim39-201ENSMUST00000042717 Gm35339A0A140LHH9 1649 aa17.77■□□□□ 0.44
Trim39-201ENSMUST00000042717 Abcc9P70170 1546 aa17.4■□□□□ 0.38
Trim39-201ENSMUST00000042717 Abcc8B2RUS7 1588 aa17.2■□□□□ 0.34
Trim39-201ENSMUST00000042717 Rhox8Q6VSS7 320 aa16.47■□□□□ 0.23
Trim39-201ENSMUST00000042717 ScribQ80U72 1612 aa16.29■□□□□ 0.2
Trim39-201ENSMUST00000042717 Kdm5dQ62240 1548 aa15.92■□□□□ 0.14
Trim39-201ENSMUST00000042717 NacadQ5SWP3 1504 aa15.84■□□□□ 0.13
Trim39-201ENSMUST00000042717 Dcaf1Q80TR8 1506 aa15.83■□□□□ 0.12
Trim39-201ENSMUST00000042717 Rb1cc1Q9ESK9 1588 aa15.75■□□□□ 0.11
Trim39-201ENSMUST00000042717 Baz1aO88379 1555 aa15.51■□□□□ 0.07
Trim39-201ENSMUST00000042717 Sycp2Q9CUU3 1500 aa15.5■□□□□ 0.07
Trim39-201ENSMUST00000042717 Zcchc6Q5BLK4 1491 aaKnown RBP15.41■□□□□ 0.06
Trim39-201ENSMUST00000042717 Rtl1Q7M732 1744 aa15.35■□□□□ 0.05
Trim39-201ENSMUST00000042717 Ccdc180J3QNE4 1664 aa15.33■□□□□ 0.04
Trim39-201ENSMUST00000042717 Ccdc136Q3TVA9 1136 aa15.32■□□□□ 0.04
Trim39-201ENSMUST00000042717 BicraF8VPZ9 1578 aa15.22■□□□□ 0.03
Trim39-201ENSMUST00000042717 Crybg2B7ZCC2 1516 aa15.22■□□□□ 0.03
Trim39-201ENSMUST00000042717 Smarca2Q6DIC0 1577 aa15.09■□□□□ 0.01
Trim39-201ENSMUST00000042717 Cecr2E9Q2Z1 1453 aa14.98□□□□□ -0.01
Trim39-201ENSMUST00000042717 Trim41Q5NCC3 630 aa14.9□□□□□ -0.02
Trim39-201ENSMUST00000042717 Brd4Q9ESU6 1400 aaKnown RBP14.78□□□□□ -0.04
Trim39-201ENSMUST00000042717 Esf1Q3V1V3 845 aaKnown RBP14.74□□□□□ -0.05
Trim39-201ENSMUST00000042717 Smarca4Q3TKT4 1613 aaKnown RBP14.74□□□□□ -0.05
Trim39-201ENSMUST00000042717 Synj1Q8CHC4 1574 aa14.71□□□□□ -0.05
Trim39-201ENSMUST00000042717 Cngb1E1AZ71 1325 aa14.71□□□□□ -0.06
Trim39-201ENSMUST00000042717 Pds5bQ4VA53 1446 aaKnown RBP14.69□□□□□ -0.06
Trim39-201ENSMUST00000042717 CftrP26361 1476 aa14.66□□□□□ -0.06
Trim39-201ENSMUST00000042717 Atad2bE9Q166 1460 aaKnown RBP14.65□□□□□ -0.06
Trim39-201ENSMUST00000042717 Iqgap2Q3UQ44 1575 aa14.61□□□□□ -0.07
Trim39-201ENSMUST00000042717 Cttnbp2B9EJA2 1648 aa14.56□□□□□ -0.08
Trim39-201ENSMUST00000042717 Ercc6F8VPZ5 1481 aa14.46□□□□□ -0.09
Trim39-201ENSMUST00000042717 Golga3P55937 1487 aa14.46□□□□□ -0.09
Trim39-201ENSMUST00000042717 HrcG5E8J6 738 aa14.46□□□□□ -0.09
Trim39-201ENSMUST00000042717 Frmpd1A2AKB4 1549 aa14.4□□□□□ -0.1
Trim39-201ENSMUST00000042717 Chic1Q8CBW7 227 aa14.38□□□□□ -0.11
Trim39-201ENSMUST00000042717 Wdr62Q3U3T8 1523 aa14.37□□□□□ -0.11
Trim39-201ENSMUST00000042717 Rsf1E9PWW9 1441 aaKnown RBP14.31□□□□□ -0.12
Trim39-201ENSMUST00000042717 Thoc2B1AZI6 1594 aaKnown RBP14.31□□□□□ -0.12
Trim39-201ENSMUST00000042717 Dnajc5bQ9CQ94 199 aa14.3□□□□□ -0.12
Trim39-201ENSMUST00000042717 Ccdc88bQ4QRL3 1481 aa14.3□□□□□ -0.12
Trim39-201ENSMUST00000042717 Gab3Q8BSM5 595 aa14.3□□□□□ -0.12
Trim39-201ENSMUST00000042717 Top2bQ64511 1612 aa14.27□□□□□ -0.12
Trim39-201ENSMUST00000042717 Cc2d2aQ8CFW7 1633 aa14.25□□□□□ -0.13
Trim39-201ENSMUST00000042717 Ubl4bQ9CQ84 188 aa14.23□□□□□ -0.13
Trim39-201ENSMUST00000042717 Cep164Q5DU05 1446 aa14.22□□□□□ -0.13
Trim39-201ENSMUST00000042717 Phldb1Q6PDH0 1371 aaKnown RBP14.21□□□□□ -0.14
Trim39-201ENSMUST00000042717 Il27Q8K3I6 234 aa14.21□□□□□ -0.14
Trim39-201ENSMUST00000042717 Kif15Q6P9L6 1387 aa14.19□□□□□ -0.14
Trim39-201ENSMUST00000042717 Unc13aQ4KUS2 1712 aa14.17□□□□□ -0.14
Trim39-201ENSMUST00000042717 Fmn1Q05860 1466 aa14.15□□□□□ -0.14
Trim39-201ENSMUST00000042717 Fam135aQ6NS59 1506 aa14.08□□□□□ -0.15
Trim39-201ENSMUST00000042717 Lamc3Q9R0B6 1581 aa14.04□□□□□ -0.16
Trim39-201ENSMUST00000042717 Cux2P70298 1426 aa14.03□□□□□ -0.16
Trim39-201ENSMUST00000042717 Npm1Q61937 292 aaKnown RBP14.01□□□□□ -0.17
Trim39-201ENSMUST00000042717 Ehmt2Q9Z148 1263 aaKnown RBP14□□□□□ -0.17
Trim39-201ENSMUST00000042717 Npm2Q80W85 207 aa14□□□□□ -0.17
Trim39-201ENSMUST00000042717 TnnQ80Z71 1560 aa13.99□□□□□ -0.17
Trim39-201ENSMUST00000042717 Top2aQ01320 1528 aaKnown RBP13.97□□□□□ -0.17
Trim39-201ENSMUST00000042717 Ccdc18Q640L5 1455 aa13.94□□□□□ -0.18
Trim39-201ENSMUST00000042717 Myt1lP97500 1187 aa13.92□□□□□ -0.18
Trim39-201ENSMUST00000042717 Camsap1A2AHC3 1581 aa13.9□□□□□ -0.18
Trim39-201ENSMUST00000042717 Zeb1Q64318 1117 aa13.87□□□□□ -0.19
Trim39-201ENSMUST00000042717 Mrc2Q64449 1479 aa13.87□□□□□ -0.19
Trim39-201ENSMUST00000042717 Rapgef2Q8CHG7 1496 aa13.82□□□□□ -0.2
Trim39-201ENSMUST00000042717 PtprkP35822 1457 aa13.81□□□□□ -0.2
Trim39-201ENSMUST00000042717 LrpprcQ6PB66 1392 aaKnown RBP13.8□□□□□ -0.2
Trim39-201ENSMUST00000042717 Grin2bQ01097 1482 aa13.78□□□□□ -0.2
Trim39-201ENSMUST00000042717 Dhx29Q6PGC1 1365 aaKnown RBP13.76□□□□□ -0.21
Trim39-201ENSMUST00000042717 Cep162Q6ZQ06 1403 aa13.76□□□□□ -0.21
Trim39-201ENSMUST00000042717 Kif21aQ9QXL2 1672 aa13.73□□□□□ -0.21
Trim39-201ENSMUST00000042717 Shroom4Q1W617 1475 aa13.72□□□□□ -0.21
Trim39-201ENSMUST00000042717 Baz1bQ9Z277 1479 aa13.72□□□□□ -0.21
Trim39-201ENSMUST00000042717 PogzQ8BZH4 1409 aaKnown RBP13.72□□□□□ -0.21
Trim39-201ENSMUST00000042717 NrkQ9R0G8 1455 aa13.71□□□□□ -0.21
Trim39-201ENSMUST00000042717 Duox2A2AQ99 1517 aa13.7□□□□□ -0.22
Trim39-201ENSMUST00000042717 Arhgap35Q91YM2 1499 aa13.64□□□□□ -0.23
Trim39-201ENSMUST00000042717 Efcab5A0JP43 1406 aa13.64□□□□□ -0.23
Trim39-201ENSMUST00000042717 Crocc2F6XLV1 1638 aa13.63□□□□□ -0.23
Trim39-201ENSMUST00000042717 Plb1Q3TTY0 1478 aa13.61□□□□□ -0.23
Trim39-201ENSMUST00000042717 Ap3b1Q9Z1T1 1105 aa13.6□□□□□ -0.23
Trim39-201ENSMUST00000042717 Rad54l2Q99NG0 1466 aa13.59□□□□□ -0.23
Trim39-201ENSMUST00000042717 Samd9lQ69Z37 1561 aa13.59□□□□□ -0.23
Trim39-201ENSMUST00000042717 Urb2E9Q7L1 1524 aaKnown RBP13.58□□□□□ -0.24
Trim39-201ENSMUST00000042717 Mroh2bQ7M6Y6 1581 aa13.56□□□□□ -0.24
Trim39-201ENSMUST00000042717 Clip1Q922J3 1391 aa13.56□□□□□ -0.24
Trim39-201ENSMUST00000042717 Eif4g1Q6NZJ6 1600 aaKnown RBP13.55□□□□□ -0.24
Trim39-201ENSMUST00000042717 Lrriq1Q0P5X1 1673 aa13.52□□□□□ -0.24
Trim39-201ENSMUST00000042717 Map3k1P53349 1493 aa13.49□□□□□ -0.25
Trim39-201ENSMUST00000042717 Plekhg3Q4VAC9 1341 aa13.49□□□□□ -0.25
Trim39-201ENSMUST00000042717 SynmQ70IV5 1561 aa13.48□□□□□ -0.25
Trim39-201ENSMUST00000042717 Setd5Q5XJV7 1441 aa13.48□□□□□ -0.25
Trim39-201ENSMUST00000042717 Carmil1Q6EDY6 1374 aa13.47□□□□□ -0.25
Trim39-201ENSMUST00000042717 UbtfP25976 765 aaKnown RBP13.47□□□□□ -0.25
Trim39-201ENSMUST00000042717 Disp1Q3TDN0 1521 aa13.45□□□□□ -0.26
Trim39-201ENSMUST00000042717 Eea1Q8BL66 1411 aa13.44□□□□□ -0.26
Trim39-201ENSMUST00000042717 Ift140E9PY46 1464 aa13.42□□□□□ -0.26
Trim39-201ENSMUST00000042717 Grin2aP35436 1464 aa13.42□□□□□ -0.26
Trim39-201ENSMUST00000042717 Magi3Q9EQJ9 1476 aa13.41□□□□□ -0.26
Trim39-201ENSMUST00000042717 Pla2r1Q62028 1487 aa13.4□□□□□ -0.26
Retrieved 100 of 22,080 RNA–protein pairs in 1429.6 ms