RNA–Protein interactions for RNA: YHR099W

TRA1, Transcript of Subunit of SAGA and NuA4 histone acetyltransferase complexes, yeast

Gene TRA1, Length 11,235 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRA1	YHR099W	CDC31	P06704	161 aa	Known RBP	2.6	□□□□□ -1.99
TRA1	YHR099W	PEP12	P32854	288 aa		2.6	□□□□□ -1.99
TRA1	YHR099W	CST6	P40535	587 aa		2.6	□□□□□ -1.99
TRA1	YHR099W	GYP7	P48365	746 aa		2.6	□□□□□ -1.99
TRA1	YHR099W	MCM6	P53091	1017 aa	Known RBP	2.6	□□□□□ -1.99
TRA1	YHR099W	YGR122W	P53272	402 aa		2.6	□□□□□ -1.99
TRA1	YHR099W	GFD1	Q04839	188 aa	Known RBP	2.6	□□□□□ -1.99
TRA1	YHR099W	SRN2	Q99176	213 aa		2.6	□□□□□ -1.99
TRA1	YHR099W	NHA1	Q99271	985 aa		2.6	□□□□□ -1.99
TRA1	YHR099W	RAD9	P14737	1309 aa		2.6	□□□□□ -1.99
TRA1	YHR099W	CDC16	P09798	840 aa		2.6	□□□□□ -1.99
TRA1	YHR099W	PHO87	P25360	923 aa		2.6	□□□□□ -1.99
TRA1	YHR099W	YRO2	P38079	344 aa		2.6	□□□□□ -1.99
TRA1	YHR099W	PCM1	P38628	557 aa	Known RBP	2.6	□□□□□ -1.99
TRA1	YHR099W	NOP16	P40007	231 aa	Known RBP	2.6	□□□□□ -1.99
TRA1	YHR099W	GSM1	P42950	618 aa		2.6	□□□□□ -1.99
TRA1	YHR099W	MDR1	P53258	950 aa		2.6	□□□□□ -1.99
TRA1	YHR099W	COP1	P53622	1201 aa	Known RBP	2.6	□□□□□ -1.99
TRA1	YHR099W	KTR5	P53966	522 aa	Predicted RBP	2.6	□□□□□ -1.99
TRA1	YHR099W	SPC19	Q03954	165 aa		2.6	□□□□□ -1.99
TRA1	YHR099W	YCG1	Q06680	1035 aa		2.6	□□□□□ -1.99
TRA1	YHR099W	RBK1	P25332	333 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	GLC8	P41818	229 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	MNN11	P46985	422 aa	Known RBP	2.59	□□□□□ -1.99
TRA1	YHR099W	SPP382	Q06411	708 aa	Predicted RBP	2.59	□□□□□ -1.99
TRA1	YHR099W	ATG13	Q06628	738 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	MCD1	Q12158	566 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	RPO31	P04051	1460 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	MCM7	P38132	845 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	YHR122W	P38829	231 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	EMP65	P40085	556 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	SHE4	P51534	789 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	ADE12	P80210	433 aa	Known RBP	2.59	□□□□□ -1.99
TRA1	YHR099W	PKH1	Q03407	766 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	IQG1	Q12280	1495 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	PIF1	P07271	859 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	MPH2	P0CD99	609 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	HCS1	P34243	683 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	RTC3	P38804	111 aa	Predicted RBP	2.59	□□□□□ -1.99
TRA1	YHR099W	RVS167	P39743	482 aa	Known RBP	2.59	□□□□□ -1.99
TRA1	YHR099W	TIM11	P81449	96 aa	Predicted RBP	2.59	□□□□□ -1.99
TRA1	YHR099W	STU1	P38198	1513 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	PSK1	P31374	1356 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	RGP1	P16664	663 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	MSP1	P28737	362 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	FES1	P38260	290 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	BDH2	P39713	417 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	2.59	□□□□□ -1.99	not detected
TRA1	YHR099W	CCT7	P42943	550 aa	Known RBP	2.59	□□□□□ -1.99
TRA1	YHR099W	SPP2	Q02521	185 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	YLR283W	Q05867	314 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	YLR287C	Q05881	355 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	SRB8	P25648	1427 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	SSA3	P09435	649 aa	Known RBP	2.59	□□□□□ -1.99
TRA1	YHR099W	PRP28	P23394	588 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	NDE1	P40215	560 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	NHP10	Q03435	203 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	RCO1	Q04779	684 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	HRQ1	Q05549	1077 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	FMP25	Q08023	583 aa		2.59	□□□□□ -1.99
TRA1	YHR099W	MAS1	P10507	462 aa		2.59	□□□□□ -2
TRA1	YHR099W	GRX1	P25373	110 aa	Known RBP	2.59	□□□□□ -2
TRA1	YHR099W	ARO7	P32178	256 aa		2.59	□□□□□ -2
TRA1	YHR099W	SWI3	P32591	825 aa		2.59	□□□□□ -2
TRA1	YHR099W	UTP25	P40498	721 aa	Known RBP	2.59	□□□□□ -2
TRA1	YHR099W	PSP1	P50896	841 aa	Known RBP	2.59	□□□□□ -2
TRA1	YHR099W	SQS1	P53866	767 aa	Known RBP	2.59	□□□□□ -2
TRA1	YHR099W	HXT15	P54854	567 aa		2.59	□□□□□ -2
TRA1	YHR099W	SHE9	Q04172	456 aa		2.59	□□□□□ -2
TRA1	YHR099W	YKU80	Q04437	629 aa		2.59	□□□□□ -2
TRA1	YHR099W	YLR257W	Q06146	321 aa	Known RBP	2.59	□□□□□ -2
TRA1	YHR099W	CDC45	Q08032	650 aa		2.59	□□□□□ -2
TRA1	YHR099W	MTF2	P10849	440 aa		2.59	□□□□□ -2
TRA1	YHR099W	MET4	P32389	672 aa		2.59	□□□□□ -2
TRA1	YHR099W	AFG2	P32794	780 aa		2.59	□□□□□ -2
TRA1	YHR099W	SER1	P33330	395 aa	Known RBP	2.59	□□□□□ -2
TRA1	YHR099W	FZO1	P38297	855 aa		2.59	□□□□□ -2
TRA1	YHR099W	TY1B-DR4	Q07793	1604 aa		2.59	□□□□□ -2
TRA1	YHR099W	CMK1	P27466	446 aa	Known RBP	2.59	□□□□□ -2
TRA1	YHR099W	NIC96	P34077	839 aa		2.59	□□□□□ -2
TRA1	YHR099W	PIM1	P36775	1133 aa		2.59	□□□□□ -2
TRA1	YHR099W	EXO84	P38261	753 aa		2.59	□□□□□ -2
TRA1	YHR099W	ERP5	P38819	212 aa		2.59	□□□□□ -2
TRA1	YHR099W	AIM9	P40053	627 aa	Known RBP	2.59	□□□□□ -2
TRA1	YHR099W	VTA1	Q06263	330 aa		2.59	□□□□□ -2
TRA1	YHR099W	DOP1	Q03921	1698 aa		2.58	□□□□□ -2
TRA1	YHR099W	OPI1	P21957	404 aa		2.58	□□□□□ -2
TRA1	YHR099W	SEC21	P32074	935 aa	Known RBP	2.58	□□□□□ -2
TRA1	YHR099W	SLX1	P38324	304 aa		2.58	□□□□□ -2
TRA1	YHR099W	YHR020W	P38708	688 aa	Known RBP	2.58	□□□□□ -2
TRA1	YHR099W	KAP123	P40069	1113 aa	Known RBP	2.58	□□□□□ -2
TRA1	YHR099W	UPF3	P48412	387 aa	Known RBP	2.58	□□□□□ -2
TRA1	YHR099W	STB4	P50104	949 aa		2.58	□□□□□ -2
TRA1	YHR099W	MLP1	Q02455	1875 aa	Known RBP	2.58	□□□□□ -2
TRA1	YHR099W	TY3B-I	Q7LHG5	1498 aa	Known RBP	2.58	□□□□□ -2
TRA1	YHR099W	MSB1	P21339	1137 aa	Known RBP	2.58	□□□□□ -2
TRA1	YHR099W	BFA1	P47113	574 aa		2.58	□□□□□ -2
TRA1	YHR099W	CTF18	P49956	741 aa		2.58	□□□□□ -2
TRA1	YHR099W	YKE2	P52553	114 aa		2.58	□□□□□ -2
TRA1	YHR099W	KRE28	Q04431	385 aa		2.58	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 604.3 ms