RNA–Protein interactions for RNA: YGR193C

PDX1, Transcript of E3-binding protein of the mitochondrial pyruvate dehydrogenase complex, yeast

Gene PDX1, Length 1,233 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PDX1	YGR193C	SAM35	P14693	329 aa		4.26	□□□□□ -1.73
PDX1	YGR193C	SSB2	P40150	613 aa	Known RBP	4.26	□□□□□ -1.73
PDX1	YGR193C	RNH70	P53331	553 aa		4.26	□□□□□ -1.73
PDX1	YGR193C	ECM16	Q04217	1267 aa	Known RBP	4.26	□□□□□ -1.73
PDX1	YGR193C	GSF2	Q04697	403 aa	Known RBP	4.26	□□□□□ -1.73
PDX1	YGR193C	GPI13	Q07830	1017 aa		4.26	□□□□□ -1.73
PDX1	YGR193C	HSP42	Q12329	375 aa		4.26	□□□□□ -1.73
PDX1	YGR193C	FRT1	Q99332	602 aa		4.26	□□□□□ -1.73
PDX1	YGR193C	INO80	P53115	1489 aa		4.25	□□□□□ -1.73
PDX1	YGR193C	PET111	P08468	800 aa		4.25	□□□□□ -1.73
PDX1	YGR193C	TRL1	P09880	827 aa	Known RBP	4.25	□□□□□ -1.73
PDX1	YGR193C	KAR1	P11927	433 aa		4.25	□□□□□ -1.73
PDX1	YGR193C	TSR4	P25040	408 aa		4.25	□□□□□ -1.73
PDX1	YGR193C	NFU1	P32860	256 aa		4.25	□□□□□ -1.73
PDX1	YGR193C	TOD6	P34219	525 aa		4.25	□□□□□ -1.73
PDX1	YGR193C	SEC9	P40357	651 aa		4.25	□□□□□ -1.73
PDX1	YGR193C	SEN54	Q02825	467 aa	Predicted RBP	4.25	□□□□□ -1.73
PDX1	YGR193C	YPL277C	Q08989	487 aa		4.25	□□□□□ -1.73
PDX1	YGR193C	TY1B-A	O13527	1196 aa	Known RBP	4.24	□□□□□ -1.73
PDX1	YGR193C	STM1	P39015	273 aa	Known RBP	4.24	□□□□□ -1.73
PDX1	YGR193C	YAR028W	P39548	234 aa		4.24	□□□□□ -1.73
PDX1	YGR193C	RPL34A	P87262	121 aa	Predicted RBP	4.24	□□□□□ -1.73
PDX1	YGR193C	ENT2	Q05785	613 aa		4.24	□□□□□ -1.73
PDX1	YGR193C	YOL057W	Q08225	711 aa		4.24	□□□□□ -1.73
PDX1	YGR193C	DPB3	P27344	201 aa		4.23	□□□□□ -1.73
PDX1	YGR193C	CDC3	P32457	520 aa	Known RBP	4.23	□□□□□ -1.73
PDX1	YGR193C	YKL077W	P36081	392 aa		4.23	□□□□□ -1.73
PDX1	YGR193C	NPR3	P38742	1146 aa		4.23	□□□□□ -1.73
PDX1	YGR193C	RVS167	P39743	482 aa	Known RBP	4.23	□□□□□ -1.73
PDX1	YGR193C	DNM1	P54861	757 aa		4.23	□□□□□ -1.73
PDX1	YGR193C	PRP3	Q03338	469 aa	Predicted RBP	4.23	□□□□□ -1.73
PDX1	YGR193C	JIP5	Q06214	492 aa	Predicted RBP	4.23	□□□□□ -1.73
PDX1	YGR193C	SSF2	Q12153	453 aa	Predicted RBP	4.23	□□□□□ -1.73
PDX1	YGR193C	CLF1	Q12309	687 aa	Predicted RBP	4.23	□□□□□ -1.73
PDX1	YGR193C	SOD2	P00447	233 aa		4.22	□□□□□ -1.73
PDX1	YGR193C	RET1	P22276	1149 aa	Known RBP	4.22	□□□□□ -1.73
PDX1	YGR193C	RAD51	P25454	400 aa		4.22	□□□□□ -1.73
PDX1	YGR193C	RPN12	P32496	274 aa		4.22	□□□□□ -1.73
PDX1	YGR193C	GRS1	P38088	690 aa	Known RBP	4.22	□□□□□ -1.73
PDX1	YGR193C	MAL31	P38156	614 aa		4.22	□□□□□ -1.73
PDX1	YGR193C	YHL012W	P38709	493 aa		4.22	□□□□□ -1.73
PDX1	YGR193C	MDJ2	P42834	146 aa		4.22	□□□□□ -1.73
PDX1	YGR193C	MTR4	P47047	1073 aa	Known RBP	4.22	□□□□□ -1.73
PDX1	YGR193C	UTP5	Q04177	643 aa	Known RBP	4.22	□□□□□ -1.73
PDX1	YGR193C	SVF1	Q05515	481 aa		4.22	□□□□□ -1.73
PDX1	YGR193C	SNU66	Q12420	587 aa	Predicted RBP	4.22	□□□□□ -1.73
PDX1	YGR193C	RPS13	P05756	151 aa	Known RBP	4.21	□□□□□ -1.74
PDX1	YGR193C	SWI3	P32591	825 aa		4.21	□□□□□ -1.74
PDX1	YGR193C	VPS24	P36095	224 aa	Known RBP	4.21	□□□□□ -1.74
PDX1	YGR193C	PPX1	P38698	397 aa		4.21	□□□□□ -1.74
PDX1	YGR193C	ERP5	P38819	212 aa		4.21	□□□□□ -1.74
PDX1	YGR193C	NNF2	P53253	936 aa		4.21	□□□□□ -1.74
PDX1	YGR193C	CTF4	Q01454	927 aa		4.21	□□□□□ -1.74
PDX1	YGR193C	MDM1	Q01846	1127 aa		4.21	□□□□□ -1.74
PDX1	YGR193C	NSE3	Q05541	303 aa		4.21	□□□□□ -1.74
PDX1	YGR193C	RSA3	Q05942	220 aa	Known RBP	4.21	□□□□□ -1.74
PDX1	YGR193C	NOC3	Q07896	663 aa	Predicted RBP	4.21	□□□□□ -1.74
PDX1	YGR193C	SPC110	P32380	944 aa		4.2	□□□□□ -1.74
PDX1	YGR193C	UGA4	P32837	571 aa		4.2	□□□□□ -1.74
PDX1	YGR193C	PPG1	P32838	368 aa		4.2	□□□□□ -1.74
PDX1	YGR193C	TFC3	P34111	1160 aa		4.2	□□□□□ -1.74
PDX1	YGR193C	XKS1	P42826	600 aa		4.2	□□□□□ -1.74
PDX1	YGR193C	YJL045W	P47052	634 aa		4.2	□□□□□ -1.74
PDX1	YGR193C	BNI5	P53890	448 aa	Known RBP	4.2	□□□□□ -1.74
PDX1	YGR193C	NOG1	Q02892	647 aa	Known RBP	4.2	□□□□□ -1.74
PDX1	YGR193C	HEL2	Q05580	639 aa	Known RBP	4.2	□□□□□ -1.74
PDX1	YGR193C	NUT2	Q06213	157 aa		4.2	□□□□□ -1.74
PDX1	YGR193C	CEX1	Q12453	761 aa		4.2	□□□□□ -1.74
PDX1	YGR193C	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	not detected
PDX1	YGR193C	YOL098C	Q12496	1037 aa		4.2	□□□□□ -1.74
PDX1	YGR193C	VPS5	Q92331	675 aa		4.2	□□□□□ -1.74
PDX1	YGR193C	MSH3	P25336	1018 aa		4.19	□□□□□ -1.74
PDX1	YGR193C	SAS3	P34218	831 aa		4.19	□□□□□ -1.74
PDX1	YGR193C	BFA1	P47113	574 aa		4.19	□□□□□ -1.74
PDX1	YGR193C	GPI8	P49018	411 aa		4.19	□□□□□ -1.74
PDX1	YGR193C	VPS4	P52917	437 aa		4.19	□□□□□ -1.74
PDX1	YGR193C	SNO2	P53823	222 aa		4.19	□□□□□ -1.74
PDX1	YGR193C	RIA1	P53893	1110 aa		4.19	□□□□□ -1.74
PDX1	YGR193C	CLU1	Q03690	1277 aa	Known RBP	4.19	□□□□□ -1.74
PDX1	YGR193C	VMS1	Q04311	632 aa	Known RBP	4.19	□□□□□ -1.74
PDX1	YGR193C	CTS1	P29029	562 aa		4.18	□□□□□ -1.74
PDX1	YGR193C	BRF1	P29056	596 aa		4.18	□□□□□ -1.74
PDX1	YGR193C	AIM26	P32858	118 aa		4.18	□□□□□ -1.74
PDX1	YGR193C	MDL2	P33311	773 aa		4.18	□□□□□ -1.74
PDX1	YGR193C	CBF5	P33322	483 aa	Known RBP RIP-Chip data	4.18	□□□□□ -1.74	not detected
PDX1	YGR193C	PIM1	P36775	1133 aa		4.18	□□□□□ -1.74
PDX1	YGR193C	SHU2	P38957	223 aa		4.18	□□□□□ -1.74
PDX1	YGR193C	PES4	P39684	611 aa		4.18	□□□□□ -1.74
PDX1	YGR193C	SRP1	Q02821	542 aa	Known RBP	4.18	□□□□□ -1.74
PDX1	YGR193C	OYE2	Q03558	400 aa	Known RBP	4.18	□□□□□ -1.74
PDX1	YGR193C	POB3	Q04636	552 aa	Known RBP	4.18	□□□□□ -1.74
PDX1	YGR193C	YCS4	Q06156	1176 aa		4.18	□□□□□ -1.74
PDX1	YGR193C	APC5	Q08683	685 aa		4.18	□□□□□ -1.74
PDX1	YGR193C	SGT2	Q12118	346 aa	Known RBP	4.18	□□□□□ -1.74
PDX1	YGR193C	SAC3	P46674	1301 aa		4.18	□□□□□ -1.74
PDX1	YGR193C	CYB2	P00175	591 aa		4.17	□□□□□ -1.74
PDX1	YGR193C	MSM1	P22438	575 aa		4.17	□□□□□ -1.74
PDX1	YGR193C	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.17	□□□□□ -1.74	not detected
PDX1	YGR193C	GRX4	P32642	244 aa		4.17	□□□□□ -1.74
PDX1	YGR193C	STE5	P32917	917 aa		4.17	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 54.6 ms