RNA–Protein interactions for RNA: YDL112W

TRM3, Transcript of 2'-O-ribose methyltransferase, yeast

Gene TRM3, Length 4,311 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRM3	YDL112W	DSD1	P53095	428 aa		2.24	□□□□□ -2.05
TRM3	YDL112W	MNL2	Q12205	849 aa		2.24	□□□□□ -2.05
TRM3	YDL112W	GRX6	Q12438	231 aa		2.24	□□□□□ -2.05
TRM3	YDL112W	SRP40	P32583	406 aa	Predicted RBP	2.24	□□□□□ -2.05
TRM3	YDL112W	PGM2	P37012	569 aa	Known RBP	2.24	□□□□□ -2.05
TRM3	YDL112W	NTA1	P40354	457 aa		2.24	□□□□□ -2.05
TRM3	YDL112W	YIL165C	P40446	119 aa		2.24	□□□□□ -2.05
TRM3	YDL112W	SPO74	P45819	413 aa		2.24	□□□□□ -2.05
TRM3	YDL112W	ELA1	P53861	379 aa	Predicted RBP	2.24	□□□□□ -2.05
TRM3	YDL112W	YCS4	Q06156	1176 aa		2.24	□□□□□ -2.05
TRM3	YDL112W	ETP1	P38748	585 aa	Known RBP	2.24	□□□□□ -2.05
TRM3	YDL112W	PRK1	P40494	810 aa		2.24	□□□□□ -2.05
TRM3	YDL112W	YBP2	P53169	641 aa		2.24	□□□□□ -2.05
TRM3	YDL112W	CDC55	Q00362	526 aa		2.24	□□□□□ -2.05
TRM3	YDL112W	PHO4	P07270	312 aa	Known RBP	2.23	□□□□□ -2.05
TRM3	YDL112W	PPG1	P32838	368 aa		2.23	□□□□□ -2.05
TRM3	YDL112W	YKL091C	P33324	310 aa	Known RBP	2.23	□□□□□ -2.05
TRM3	YDL112W	PPX1	P38698	397 aa		2.23	□□□□□ -2.05
TRM3	YDL112W	FAA4	P47912	694 aa	Known RBP	2.23	□□□□□ -2.05
TRM3	YDL112W	ULP1	Q02724	621 aa		2.23	□□□□□ -2.05
TRM3	YDL112W	RMT2	Q03305	412 aa		2.23	□□□□□ -2.05
TRM3	YDL112W	TY1A-DR2	Q03964	440 aa	Known RBP	2.23	□□□□□ -2.05
TRM3	YDL112W	CDC53	Q12018	815 aa	Known RBP	2.23	□□□□□ -2.05
TRM3	YDL112W	LEU1	P07264	779 aa	Known RBP	2.23	□□□□□ -2.05
TRM3	YDL112W	RAD27	P26793	382 aa		2.23	□□□□□ -2.05
TRM3	YDL112W	YLR225C	Q05948	407 aa	Known RBP	2.23	□□□□□ -2.05
TRM3	YDL112W	PEX28	P38848	579 aa		2.23	□□□□□ -2.05
TRM3	YDL112W	GPB2	P39717	880 aa		2.23	□□□□□ -2.05
TRM3	YDL112W	SSP2	Q08646	371 aa		2.23	□□□□□ -2.05
TRM3	YDL112W	KCC4	P25389	1037 aa		2.23	□□□□□ -2.05
TRM3	YDL112W	KTR2	P33550	425 aa		2.23	□□□□□ -2.05
TRM3	YDL112W	RRM3	P38766	723 aa		2.23	□□□□□ -2.05
TRM3	YDL112W	GIP2	P40036	548 aa		2.23	□□□□□ -2.05
TRM3	YDL112W	DUS1	P53759	423 aa	Known RBP	2.23	□□□□□ -2.05
TRM3	YDL112W	KAR2	P16474	682 aa	Known RBP	2.22	□□□□□ -2.05
TRM3	YDL112W	RET1	P22276	1149 aa	Known RBP	2.22	□□□□□ -2.05
TRM3	YDL112W	AOS1	Q06624	347 aa		2.22	□□□□□ -2.05
TRM3	YDL112W	RIX7	Q07844	837 aa	Known RBP	2.22	□□□□□ -2.05
TRM3	YDL112W	MSH3	P25336	1018 aa		2.22	□□□□□ -2.05
TRM3	YDL112W	ABD1	P32783	436 aa	Predicted RBP	2.22	□□□□□ -2.05
TRM3	YDL112W	TIM54	P47045	478 aa		2.22	□□□□□ -2.05
TRM3	YDL112W	ESC2	Q06340	456 aa		2.22	□□□□□ -2.05
TRM3	YDL112W	TDA5	Q06417	326 aa	Known RBP	2.22	□□□□□ -2.05
TRM3	YDL112W	DUR1,2	P32528	1835 aa	Known RBP	2.22	□□□□□ -2.05
TRM3	YDL112W	LPD1	P09624	499 aa	Known RBP	2.22	□□□□□ -2.05
TRM3	YDL112W	PAN5	P38787	379 aa		2.22	□□□□□ -2.05
TRM3	YDL112W	YJR124C	P47159	448 aa		2.22	□□□□□ -2.05
TRM3	YDL112W	UBP16	Q02863	499 aa		2.22	□□□□□ -2.05
TRM3	YDL112W	UBX2	Q04228	584 aa		2.22	□□□□□ -2.05
TRM3	YDL112W	RSC2	Q06488	889 aa		2.22	□□□□□ -2.05
TRM3	YDL112W	RAD2	P07276	1031 aa		2.21	□□□□□ -2.06
TRM3	YDL112W	DUR3	P33413	735 aa		2.21	□□□□□ -2.06
TRM3	YDL112W	YJR008W	P47085	338 aa		2.21	□□□□□ -2.06
TRM3	YDL112W	FLP1	P03870	423 aa		2.21	□□□□□ -2.06
TRM3	YDL112W	AKL1	P38080	1108 aa	Known RBP	2.21	□□□□□ -2.06
TRM3	YDL112W	SYF1	Q04048	859 aa	Predicted RBP	2.21	□□□□□ -2.06
TRM3	YDL112W	ESF1	Q06344	628 aa	Known RBP	2.21	□□□□□ -2.06
TRM3	YDL112W	HIM1	Q06674	414 aa		2.21	□□□□□ -2.06
TRM3	YDL112W	SMY1	P32364	656 aa	Known RBP	2.21	□□□□□ -2.06
TRM3	YDL112W	REI1	P38344	393 aa	Predicted RBP	2.21	□□□□□ -2.06
TRM3	YDL112W	UTP4	Q06679	776 aa	Known RBP	2.21	□□□□□ -2.06
TRM3	YDL112W	FUS1	P11710	512 aa		2.21	□□□□□ -2.06
TRM3	YDL112W	SAC7	P17121	654 aa		2.21	□□□□□ -2.06
TRM3	YDL112W	PUF4	P25339	888 aa	Known RBP RIP-Chip data	2.21	□□□□□ -2.06	RIP-Chip
TRM3	YDL112W	SQS1	P53866	767 aa	Known RBP	2.21	□□□□□ -2.06
TRM3	YDL112W	YNL050C	P53952	270 aa		2.21	□□□□□ -2.06
TRM3	YDL112W	BDF2	Q07442	638 aa		2.21	□□□□□ -2.06
TRM3	YDL112W	NAM7	P30771	971 aa	Known RBP	2.2	□□□□□ -2.06
TRM3	YDL112W	SLS1	P42900	643 aa		2.2	□□□□□ -2.06
TRM3	YDL112W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	2.2	□□□□□ -2.06	not detected
TRM3	YDL112W	TIM50	Q02776	476 aa		2.2	□□□□□ -2.06
TRM3	YDL112W	ROD1	Q02805	837 aa		2.2	□□□□□ -2.06
TRM3	YDL112W	SAC3	P46674	1301 aa		2.2	□□□□□ -2.06
TRM3	YDL112W	COQ2	P32378	372 aa		2.2	□□□□□ -2.06
TRM3	YDL112W	YKU70	P32807	602 aa		2.2	□□□□□ -2.06
TRM3	YDL112W	TFA2	P36145	328 aa		2.2	□□□□□ -2.06
TRM3	YDL112W	TAT1	P38085	619 aa		2.2	□□□□□ -2.06
TRM3	YDL112W	YIL089W	P40500	205 aa		2.2	□□□□□ -2.06
TRM3	YDL112W	INP51	P40559	946 aa	Known RBP	2.2	□□□□□ -2.06
TRM3	YDL112W	GPM1	P00950	247 aa	Known RBP	2.2	□□□□□ -2.06
TRM3	YDL112W	CYC8	P14922	966 aa		2.2	□□□□□ -2.06
TRM3	YDL112W	SEC23	P15303	768 aa	Known RBP	2.2	□□□□□ -2.06
TRM3	YDL112W	ERS1	P17261	260 aa		2.2	□□□□□ -2.06
TRM3	YDL112W	CLN2	P20438	545 aa		2.2	□□□□□ -2.06
TRM3	YDL112W	VPS35	P34110	944 aa		2.2	□□□□□ -2.06
TRM3	YDL112W	NUT1	P53114	1132 aa		2.2	□□□□□ -2.06
TRM3	YDL112W	TDA6	Q06466	467 aa		2.2	□□□□□ -2.06
TRM3	YDL112W	MCA1	Q08601	432 aa		2.2	□□□□□ -2.06
TRM3	YDL112W	YOR131C	Q12486	218 aa		2.2	□□□□□ -2.06
TRM3	YDL112W	NHA1	Q99271	985 aa		2.2	□□□□□ -2.06
TRM3	YDL112W	PDC5	P16467	563 aa	Known RBP	2.19	□□□□□ -2.06
TRM3	YDL112W	HSP104	P31539	908 aa	Known RBP	2.19	□□□□□ -2.06
TRM3	YDL112W	WHI3	P34761	661 aa	Known RBP	2.19	□□□□□ -2.06
TRM3	YDL112W	MAM1	P40065	302 aa		2.19	□□□□□ -2.06
TRM3	YDL112W	YAF9	P53930	226 aa		2.19	□□□□□ -2.06
TRM3	YDL112W	PMT7	Q06644	662 aa		2.19	□□□□□ -2.06
TRM3	YDL112W	APC11	Q12157	165 aa		2.19	□□□□□ -2.06
TRM3	YDL112W	CCP1	P00431	361 aa		2.19	□□□□□ -2.06
TRM3	YDL112W	GCR1	P07261	785 aa		2.19	□□□□□ -2.06
TRM3	YDL112W	HVG1	P0CE11	249 aa		2.19	□□□□□ -2.06

Retrieved 100 of 5,963 RNA–protein pairs in 46 ms