RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W SNO2P53823 222 aa1.53□□□□□ -2.16
CDC39YCR093W TY1B-HO13535 1793 aa1.53□□□□□ -2.16
CDC39YCR093W TY1B-DR5P0C2I2 1755 aa1.53□□□□□ -2.16
CDC39YCR093W TY1B-DR6P0C2I3 1755 aa1.53□□□□□ -2.16
CDC39YCR093W TY1B-LR2P0C2I5 1755 aa1.53□□□□□ -2.16
CDC39YCR093W TY1B-LR3P0C2I6 1755 aaKnown RBP1.53□□□□□ -2.16
CDC39YCR093W TY1B-PR1P0C2I9 1755 aaKnown RBP1.53□□□□□ -2.16
CDC39YCR093W TY1B-PR2P0C2J0 1756 aa1.53□□□□□ -2.16
CDC39YCR093W TY1B-PR3P0C2J1 1755 aaKnown RBP1.53□□□□□ -2.16
CDC39YCR093W TY1B-JR1P47098 1755 aa1.53□□□□□ -2.16
CDC39YCR093W TY1B-ML2Q03434 1755 aaKnown RBP1.53□□□□□ -2.16
CDC39YCR093W TY1B-ER1Q03612 1755 aa1.53□□□□□ -2.16
CDC39YCR093W TY1B-ML1Q04711 1755 aaKnown RBP1.53□□□□□ -2.16
CDC39YCR093W TY1B-GR2Q12269 1755 aa1.53□□□□□ -2.16
CDC39YCR093W TY1B-OLQ12273 1755 aa1.53□□□□□ -2.16
CDC39YCR093W TY1B-PLQ12414 1755 aaKnown RBP1.53□□□□□ -2.16
CDC39YCR093W NPR1P22211 790 aa1.53□□□□□ -2.16
CDC39YCR093W SHR5P41912 237 aa1.53□□□□□ -2.16
CDC39YCR093W ALD6P54115 500 aaKnown RBP1.53□□□□□ -2.16
CDC39YCR093W RSA3Q05942 220 aaKnown RBP1.53□□□□□ -2.16
CDC39YCR093W YRF1-1P0CX20 1796 aa1.53□□□□□ -2.16
CDC39YCR093W YRF1-5P0CX21 1796 aa1.53□□□□□ -2.16
CDC39YCR093W YRF1-8P0CX22 1796 aa1.53□□□□□ -2.16
CDC39YCR093W YCF1P39109 1515 aaKnown RBP1.53□□□□□ -2.16
CDC39YCR093W CDC19P00549 500 aaKnown RBP1.53□□□□□ -2.16
CDC39YCR093W HVG1P0CE11 249 aa1.53□□□□□ -2.16
CDC39YCR093W PRP22P24384 1145 aaKnown RBP1.53□□□□□ -2.16
CDC39YCR093W NPP1P25353 742 aa1.53□□□□□ -2.16
CDC39YCR093W ORC4P54791 529 aa1.53□□□□□ -2.16
CDC39YCR093W TPP1Q03796 238 aa1.53□□□□□ -2.16
CDC39YCR093W YDR306CQ06640 478 aa1.53□□□□□ -2.16
CDC39YCR093W OPI10Q08202 246 aa1.53□□□□□ -2.16
CDC39YCR093W BPT1P14772 1559 aa1.53□□□□□ -2.16
CDC39YCR093W MSH3P25336 1018 aa1.53□□□□□ -2.16
CDC39YCR093W RFC5P38251 354 aa1.53□□□□□ -2.16
CDC39YCR093W QNS1P38795 714 aaKnown RBP1.53□□□□□ -2.16
CDC39YCR093W PPE1P38796 400 aa1.53□□□□□ -2.16
CDC39YCR093W HDA2Q06629 674 aa1.53□□□□□ -2.16
CDC39YCR093W HTS1P07263 546 aaKnown RBP1.53□□□□□ -2.17
CDC39YCR093W INO1P11986 533 aa1.53□□□□□ -2.17
CDC39YCR093W AGP1P25376 633 aa1.53□□□□□ -2.17
CDC39YCR093W DOM34P33309 386 aa1.53□□□□□ -2.17
CDC39YCR093W RIM11P38615 370 aa1.53□□□□□ -2.17
CDC39YCR093W CCC2P38995 1004 aa1.53□□□□□ -2.17
CDC39YCR093W PEA2P40091 420 aa1.53□□□□□ -2.17
CDC39YCR093W YGR053CP53234 283 aa1.53□□□□□ -2.17
CDC39YCR093W NSG2P53898 299 aa1.53□□□□□ -2.17
CDC39YCR093W MED7Q08278 222 aa1.53□□□□□ -2.17
CDC39YCR093W SOG2Q08817 791 aa1.53□□□□□ -2.17
CDC39YCR093W HXK1P04806 485 aaKnown RBP1.52□□□□□ -2.17
CDC39YCR093W AIR1P40507 360 aaKnown RBP1.52□□□□□ -2.17
CDC39YCR093W YIR007WP40566 764 aa1.52□□□□□ -2.17
CDC39YCR093W SOK2P53438 785 aaPredicted RBP1.52□□□□□ -2.17
CDC39YCR093W UGO1Q03327 502 aa1.52□□□□□ -2.17
CDC39YCR093W EMG1Q06287 252 aaKnown RBP1.52□□□□□ -2.17
CDC39YCR093W REH1Q06709 432 aa1.52□□□□□ -2.17
CDC39YCR093W CLF1Q12309 687 aaPredicted RBP1.52□□□□□ -2.17
CDC39YCR093W TY2B-LR1P0C2J3 1770 aa1.52□□□□□ -2.17
CDC39YCR093W TY2B-FP0CX63 1770 aa1.52□□□□□ -2.17
CDC39YCR093W TY2B-GR2P0CX64 1770 aa1.52□□□□□ -2.17
CDC39YCR093W TY2B-CP25384 1770 aa1.52□□□□□ -2.17
CDC39YCR093W TY2B-DR2Q03494 1770 aa1.52□□□□□ -2.17
CDC39YCR093W TY1B-DR1Q03855 1755 aa1.52□□□□□ -2.17
CDC39YCR093W TY2B-DR3Q07791 1770 aaKnown RBP1.52□□□□□ -2.17
CDC39YCR093W TY2B-OR1Q12113 1770 aa1.52□□□□□ -2.17
CDC39YCR093W TY2B-DR1Q12472 1770 aa1.52□□□□□ -2.17
CDC39YCR093W TY2B-OR2Q12501 1770 aa1.52□□□□□ -2.17
CDC39YCR093W DIF1O13577 133 aa1.52□□□□□ -2.17
CDC39YCR093W ADP1P25371 1049 aa1.52□□□□□ -2.17
CDC39YCR093W RPL8BP29453 256 aaKnown RBP1.52□□□□□ -2.17
CDC39YCR093W MET22P32179 357 aa1.52□□□□□ -2.17
CDC39YCR093W REC104P33323 182 aa1.52□□□□□ -2.17
CDC39YCR093W MXR1P40029 184 aa1.52□□□□□ -2.17
CDC39YCR093W RPN4Q03465 531 aa1.52□□□□□ -2.17
CDC39YCR093W THI72Q08579 599 aa1.52□□□□□ -2.17
CDC39YCR093W MPH2P0CD99 609 aa1.52□□□□□ -2.17
CDC39YCR093W THI4P32318 326 aa1.52□□□□□ -2.17
CDC39YCR093W STO1P34160 861 aaKnown RBP1.52□□□□□ -2.17
CDC39YCR093W DSS1P39112 969 aa1.52□□□□□ -2.17
CDC39YCR093W SPF1P39986 1215 aaKnown RBP1.52□□□□□ -2.17
CDC39YCR093W ELA1P53861 379 aaPredicted RBP1.52□□□□□ -2.17
CDC39YCR093W RCM1P53972 490 aa1.52□□□□□ -2.17
CDC39YCR093W TY1A-DR2Q03964 440 aaKnown RBP1.52□□□□□ -2.17
CDC39YCR093W UGA2P38067 497 aa1.52□□□□□ -2.17
CDC39YCR093W ACO2P39533 789 aa1.52□□□□□ -2.17
CDC39YCR093W HAS1Q03532 505 aaKnown RBP1.52□□□□□ -2.17
CDC39YCR093W YLR257WQ06146 321 aaKnown RBP1.52□□□□□ -2.17
CDC39YCR093W NUP145P49687 1317 aa1.52□□□□□ -2.17
CDC39YCR093W LTE1P07866 1435 aa1.52□□□□□ -2.17
CDC39YCR093W SSB1P11484 613 aaKnown RBP1.52□□□□□ -2.17
CDC39YCR093W GRX1P25373 110 aaKnown RBP1.52□□□□□ -2.17
CDC39YCR093W SRO9P25567 434 aaKnown RBP1.52□□□□□ -2.17
CDC39YCR093W MAC1P35192 417 aa1.52□□□□□ -2.17
CDC39YCR093W YRO2P38079 344 aa1.52□□□□□ -2.17
CDC39YCR093W CCT3P39077 534 aaKnown RBP1.52□□□□□ -2.17
CDC39YCR093W SAH1P39954 449 aaKnown RBP1.52□□□□□ -2.17
CDC39YCR093W SSB2P40150 613 aaKnown RBP1.52□□□□□ -2.17
CDC39YCR093W ALR2P43553 858 aa1.52□□□□□ -2.17
CDC39YCR093W YMR187CQ03236 431 aa1.52□□□□□ -2.17
CDC39YCR093W PRI2P20457 528 aa1.51□□□□□ -2.17
Retrieved 100 of 5,963 RNA–protein pairs in 100.6 ms